Wall clock time and date at job start Sat Apr 11 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86803 * 119.99857 * 2 1 4 4 H 1.48499 * 109.46995 * 239.72758 * 3 2 1 5 5 H 1.48508 * 109.46870 * 359.72506 * 3 2 1 6 6 H 1.48491 * 109.47153 * 119.72726 * 3 2 1 7 7 C 1.39952 * 120.00349 * 179.72877 * 2 1 3 8 8 H 1.08000 * 119.99914 * 207.11140 * 7 2 1 9 9 C 1.41388 * 119.99848 * 27.10862 * 7 2 1 10 10 C 1.40720 * 120.24471 * 204.85386 * 9 7 2 11 11 C 1.37614 * 119.74342 * 179.67460 * 10 9 7 12 12 C 1.38632 * 120.25054 * 0.62763 * 11 10 9 13 13 C 1.50699 * 119.75003 * 179.69369 * 12 11 10 14 14 N 1.46505 * 109.46947 * 269.97833 * 13 12 11 15 15 C 1.34774 * 119.99848 * 180.02562 * 14 13 12 16 16 O 1.21575 * 120.00406 * 0.02562 * 15 14 13 17 17 C 1.47708 * 119.99950 * 179.97438 * 15 14 13 18 18 C 1.41644 * 126.49669 * 179.70983 * 17 15 14 19 19 C 1.34708 * 105.33473 * 179.84892 * 18 17 15 20 20 N 1.35496 * 107.70904 * 0.38376 * 19 18 17 21 21 N 1.28424 * 109.72851 * 359.78157 * 20 19 18 22 22 C 1.47005 * 123.90294 * 179.81793 * 20 19 18 23 23 C 1.53148 * 108.88045 * 17.66427 * 22 20 19 24 24 C 1.53156 * 109.59338 * 308.86147 * 23 22 20 25 25 C 1.50799 * 127.53815 * 180.02562 * 19 18 17 26 26 H 1.08998 * 109.75320 * 76.15646 * 25 19 18 27 27 O 1.42899 * 109.71491 * 315.53537 * 25 19 18 28 28 C 1.38632 * 120.50180 * 359.67281 * 12 11 10 29 29 C 1.37623 * 120.24951 * 359.97438 * 28 12 11 30 30 H 0.96999 * 119.99562 * 184.18844 * 1 2 3 31 31 H 1.07996 * 120.12252 * 0.02562 * 10 9 7 32 32 H 1.08004 * 119.87699 * 180.31979 * 11 10 9 33 33 H 1.08999 * 109.47139 * 29.97605 * 13 12 11 34 34 H 1.09000 * 109.47291 * 149.98135 * 13 12 11 35 35 H 0.97001 * 119.99976 * 359.97438 * 14 13 12 36 36 H 1.07998 * 127.33470 * 0.02562 * 18 17 15 37 37 H 1.09002 * 109.56655 * 137.47835 * 22 20 19 38 38 H 1.08993 * 109.56786 * 257.71858 * 22 20 19 39 39 H 1.08993 * 109.45176 * 68.90375 * 23 22 20 40 40 H 1.09003 * 109.44616 * 188.85161 * 23 22 20 41 41 H 1.09001 * 109.54107 * 189.47159 * 24 23 22 42 42 H 1.08996 * 109.54181 * 309.64284 * 24 23 22 43 43 H 0.96693 * 114.00567 * 61.25474 * 27 25 19 44 44 H 1.08005 * 119.87815 * 180.02562 * 28 12 11 45 45 H 1.07997 * 120.12749 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.1009 1.6936 -1.2092 5 1 1.2771 2.7465 -0.0067 6 1 3.0909 1.6994 1.2157 7 6 2.0081 -1.2120 0.0057 8 1 2.9991 -1.2613 0.4322 9 6 1.4176 -2.3718 -0.5467 10 6 1.8229 -3.6481 -0.1143 11 6 1.2366 -4.7700 -0.6542 12 6 0.2595 -4.6465 -1.6299 13 6 -0.3702 -5.8827 -2.2183 14 7 0.3994 -6.3129 -3.3884 15 6 0.0190 -7.4049 -4.0807 16 8 -0.9629 -8.0327 -3.7346 17 6 0.7946 -7.8384 -5.2607 18 6 0.5240 -8.9613 -6.0806 19 6 1.4861 -8.9540 -7.0235 20 7 2.2938 -7.8938 -6.7799 21 7 1.8735 -7.2567 -5.7471 22 6 3.4674 -7.5524 -7.5968 23 6 3.3595 -8.2719 -8.9444 24 6 3.0904 -9.7615 -8.7111 25 6 1.6709 -9.9335 -8.1551 26 1 0.9420 -9.7315 -8.9399 27 8 1.5008 -11.2671 -7.6709 28 6 -0.1431 -3.3943 -2.0680 29 6 0.4243 -2.2585 -1.5370 30 1 -0.4849 -0.8378 0.0614 31 1 2.5870 -3.7467 0.6425 32 1 1.5423 -5.7505 -0.3201 33 1 -0.3739 -6.6783 -1.4733 34 1 -1.3943 -5.6611 -2.5185 35 1 1.1822 -5.8115 -3.6652 36 1 -0.2835 -9.6705 -5.9744 37 1 3.4979 -6.4750 -7.7597 38 1 4.3747 -7.8697 -7.0830 39 1 2.5413 -7.8412 -9.5214 40 1 4.2931 -8.1539 -9.4946 41 1 3.1804 -10.3003 -9.6544 42 1 3.8130 -10.1550 -7.9962 43 1 0.6233 -11.4439 -7.3052 44 1 -0.9055 -3.3098 -2.8284 45 1 0.1089 -1.2840 -1.8795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362946178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:57 Heat of formation + Delta-G solvation = -27.490143 kcal Electronic energy + Delta-G solvation = -28058.254377 eV Core-core repulsion = 24040.149970 eV Total energy + Delta-G solvation = -4018.104407 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.92881 -40.66395 -39.62317 -38.63504 -36.62610 -36.51435 -35.19235 -33.03594 -32.26790 -31.44249 -31.10566 -29.44514 -28.48365 -26.06079 -24.85782 -24.04137 -23.12233 -23.05709 -21.99776 -21.51506 -20.24677 -19.88141 -19.10817 -18.19914 -17.51485 -17.28442 -16.98459 -16.56816 -16.46514 -15.96280 -15.85008 -15.73668 -15.48165 -15.31030 -15.10409 -14.75490 -14.45491 -14.32875 -14.02117 -13.91762 -13.78450 -13.47601 -13.11071 -12.94207 -12.74624 -12.45567 -12.29188 -12.24675 -12.11881 -11.98123 -11.96548 -11.56535 -11.45448 -11.35590 -11.26598 -10.87684 -10.33168 -10.10808 -9.99907 -9.65867 -9.52623 -9.22577 -6.51063 0.43099 0.72958 0.91821 0.96789 1.39459 1.49845 1.59694 1.79255 2.22955 2.28878 2.31168 2.67525 3.10906 3.21621 3.37882 3.51185 3.63973 3.72422 3.95337 4.01911 4.16616 4.21065 4.24987 4.27284 4.35822 4.42028 4.51638 4.57237 4.66301 4.70189 4.81073 4.81862 4.91241 5.00585 5.08038 5.16357 5.18836 5.22171 5.34778 5.39500 5.67527 5.71470 5.74399 5.78394 6.02199 6.20065 6.34199 6.42153 6.67522 6.74384 6.82383 6.88495 7.09341 7.98050 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017799 B = 0.002078 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.782839 B =13471.868886 C =14528.839013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.004 3.996 3 Si 1.117 2.883 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.076 3.924 10 C -0.246 4.246 11 C -0.057 4.057 12 C -0.237 4.237 13 C 0.192 3.808 14 N -0.702 5.702 15 C 0.597 3.403 16 O -0.574 6.574 17 C -0.043 4.043 18 C -0.186 4.186 19 C -0.016 4.016 20 N -0.269 5.269 21 N -0.271 5.271 22 C 0.102 3.898 23 C -0.122 4.122 24 C -0.121 4.121 25 C 0.178 3.822 26 H 0.103 0.897 27 O -0.566 6.566 28 C -0.061 4.061 29 C -0.241 4.241 30 H 0.284 0.716 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.409 0.591 36 H 0.171 0.829 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.135 0.865 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.397 0.603 44 H 0.109 0.891 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.104 -16.043 -20.968 27.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.214 4.214 3 Si 0.933 3.067 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.581 4.581 8 H 0.092 0.908 9 C 0.073 3.927 10 C -0.265 4.265 11 C -0.075 4.075 12 C -0.238 4.238 13 C 0.070 3.930 14 N -0.351 5.351 15 C 0.383 3.617 16 O -0.452 6.452 17 C -0.202 4.202 18 C -0.214 4.214 19 C -0.141 4.141 20 N -0.060 5.060 21 N -0.108 5.108 22 C -0.016 4.016 23 C -0.160 4.160 24 C -0.159 4.159 25 C 0.118 3.882 26 H 0.121 0.879 27 O -0.373 6.373 28 C -0.080 4.080 29 C -0.261 4.261 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.135 0.865 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.244 0.756 36 H 0.189 0.811 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.105 0.895 40 H 0.153 0.847 41 H 0.127 0.873 42 H 0.088 0.912 43 H 0.248 0.752 44 H 0.127 0.873 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.576 -13.973 -20.813 26.188 hybrid contribution -0.895 -1.803 0.727 2.140 sum 6.682 -15.776 -20.087 26.401 Atomic orbital electron populations 1.70590 1.09002 1.33249 1.30418 1.28487 0.95645 1.07590 0.89630 0.83012 0.74805 0.69651 0.79188 1.18752 1.19573 1.18109 1.20823 1.04406 0.95464 1.37383 0.90768 1.18037 0.91001 0.93534 0.90115 1.21102 1.07022 0.92659 1.05722 1.20740 0.94555 0.97308 0.94933 1.19151 1.05854 0.93017 1.05797 1.19833 0.93704 0.93420 0.86004 1.46227 1.31584 1.27840 1.29485 1.17222 0.83037 0.80175 0.81244 1.90730 1.28216 1.56536 1.69765 1.21860 0.97672 0.99816 1.00819 1.21494 1.02917 1.00447 0.96531 1.22648 0.94077 0.94911 1.02509 1.46241 1.22096 1.18564 1.19089 1.73411 1.12861 1.22757 1.01816 1.22731 0.83818 1.03799 0.91266 1.21951 1.06670 0.93481 0.93851 1.21737 0.93672 0.97076 1.03367 1.20597 1.00088 0.78558 0.88996 0.87933 1.86507 1.40469 1.27624 1.82699 1.20713 0.97555 0.92184 0.97528 1.21078 1.05328 0.97122 1.02543 0.90346 0.88325 0.86490 0.91517 0.91886 0.75588 0.81109 0.86933 0.87611 0.89506 0.84698 0.87290 0.91225 0.75209 0.87336 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.76 12.38 21.83 0.27 -43.49 16 2 C 0.00 0.18 4.90 85.26 0.42 0.60 16 3 Si 1.12 42.69 30.01 68.60 2.06 44.74 16 4 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 5 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 6 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 7 C -0.55 -29.71 8.98 23.46 0.21 -29.50 16 8 H 0.07 3.88 7.97 -2.91 -0.02 3.86 16 9 C 0.08 4.05 5.30 -21.29 -0.11 3.94 16 10 C -0.25 -11.92 9.80 22.73 0.22 -11.70 16 11 C -0.06 -2.43 9.67 22.22 0.21 -2.22 16 12 C -0.24 -9.82 5.27 -19.68 -0.10 -9.93 16 13 C 0.19 7.04 5.79 85.63 0.50 7.54 16 14 N -0.70 -24.40 5.55 -469.83 -2.61 -27.01 16 15 C 0.60 21.22 7.82 86.75 0.68 21.90 16 16 O -0.57 -23.08 16.93 -3.95 -0.07 -23.14 16 17 C -0.04 -1.33 7.13 42.48 0.30 -1.03 16 18 C -0.19 -4.57 10.35 22.30 0.23 -4.34 16 19 C -0.02 -0.32 6.29 41.21 0.26 -0.06 16 20 N -0.27 -5.53 3.74 -333.32 -1.25 -6.78 16 21 N -0.27 -7.64 11.72 -48.06 -0.56 -8.20 16 22 C 0.10 1.09 7.17 86.33 0.62 1.71 16 23 C -0.12 -0.50 5.91 30.70 0.18 -0.32 16 24 C -0.12 -0.86 5.64 30.79 0.17 -0.68 16 25 C 0.18 2.04 3.83 30.02 0.12 2.15 16 26 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 27 O -0.57 -7.50 13.29 -148.98 -1.98 -9.48 16 28 C -0.06 -2.75 9.67 22.22 0.21 -2.53 16 29 C -0.24 -12.40 7.97 22.73 0.18 -12.22 16 30 H 0.28 16.01 6.72 -92.71 -0.62 15.39 16 31 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 32 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 33 H 0.07 2.39 8.08 -2.39 -0.02 2.37 16 34 H 0.06 2.31 8.08 -2.39 -0.02 2.29 16 35 H 0.41 13.96 8.19 -92.71 -0.76 13.20 16 36 H 0.17 3.60 8.04 -2.91 -0.02 3.58 16 37 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 0.32 8.11 -2.39 -0.02 0.30 16 40 H 0.14 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.07 0.69 8.12 -2.39 -0.02 0.67 16 43 H 0.40 2.99 8.77 -74.06 -0.65 2.34 16 44 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 45 H 0.09 4.77 6.53 -2.91 -0.02 4.75 16 Total: -1.00 -71.65 379.93 -0.05 -71.70 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: -0.22 Total: 38.33 kcal Atomic # 6 Polarization: -40.98 SS G_CDS: 4.30 Total: -36.68 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -4.14 Total: -85.47 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -2.05 Total: -32.62 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.06 Total: 44.74 kcal Total: -71.65 -0.05 -71.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362946178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.206 kcal (2) G-P(sol) polarization free energy of solvation -71.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds