Wall clock time and date at job start Sat Apr 11 2020 06:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86791 * 119.99987 * 2 1 4 4 H 1.48504 * 109.47229 * 240.00253 * 3 2 1 5 5 H 1.48506 * 109.47220 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47504 * 120.00107 * 3 2 1 7 7 C 1.37872 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00233 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00145 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.49733 * 59.93989 * 9 7 2 11 11 C 1.53042 * 109.50294 * 299.84312 * 9 7 2 12 12 C 1.53042 * 109.54130 * 178.68320 * 11 9 7 13 13 C 1.52761 * 109.38357 * 61.23534 * 12 11 9 14 14 N 1.46924 * 109.00838 * 305.59333 * 13 12 11 15 15 C 1.34779 * 120.62640 * 233.58038 * 14 13 12 16 16 O 1.21279 * 119.99962 * 184.57124 * 15 14 13 17 17 C 1.50699 * 119.99948 * 4.57079 * 15 14 13 18 18 H 1.09006 * 108.80114 * 323.32641 * 17 15 14 19 19 C 1.52480 * 108.82514 * 204.89296 * 17 15 14 20 20 C 1.54653 * 109.31608 * 176.19769 * 19 17 15 21 21 H 1.08995 * 113.99132 * 196.07090 * 20 19 17 22 22 C 1.54882 * 105.40484 * 322.60118 * 20 19 17 23 23 C 1.52487 * 111.47691 * 81.27766 * 22 20 19 24 24 C 1.54874 * 111.47714 * 0.02562 * 23 22 20 25 25 H 1.09004 * 114.60009 * 152.55323 * 24 23 22 26 26 C 1.52479 * 108.74034 * 81.71777 * 17 15 14 27 27 S 1.84220 * 105.27708 * 70.20215 * 20 19 17 28 28 O 1.42104 * 110.09892 * 177.62198 * 27 20 19 29 29 O 1.42101 * 110.09908 * 42.47016 * 27 20 19 30 30 C 1.46919 * 118.74151 * 53.31003 * 14 13 12 31 31 H 0.97006 * 119.99859 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.45891 * 298.70532 * 11 9 7 33 33 H 1.08996 * 109.46091 * 58.67256 * 11 9 7 34 34 H 1.08995 * 109.49903 * 181.31652 * 12 11 9 35 35 H 1.09006 * 109.49611 * 301.38036 * 12 11 9 36 36 H 1.08996 * 109.51094 * 185.70308 * 13 12 11 37 37 H 1.09002 * 109.42714 * 65.42590 * 13 12 11 38 38 H 1.08995 * 109.49938 * 296.14905 * 19 17 15 39 39 H 1.08999 * 109.50139 * 56.24518 * 19 17 15 40 40 H 1.09005 * 109.08537 * 201.80807 * 22 20 19 41 41 H 1.09004 * 109.08564 * 320.85714 * 22 20 19 42 42 H 1.08997 * 109.08544 * 239.47967 * 23 22 20 43 43 H 1.09001 * 109.08792 * 120.53481 * 23 22 20 44 44 H 1.08999 * 109.49854 * 303.79539 * 26 17 15 45 45 H 1.09000 * 109.50095 * 63.87257 * 26 17 15 46 46 H 1.09006 * 109.59166 * 66.42941 * 30 14 13 47 47 H 1.09004 * 109.58669 * 186.85289 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6230 -2.5566 -0.8896 11 6 0.3743 -2.5829 1.2511 12 6 -0.4161 -3.8933 1.2356 13 6 0.5558 -5.0718 1.2458 14 7 1.5001 -4.9230 0.1300 15 6 1.6746 -5.9204 -0.7595 16 8 2.5160 -5.8189 -1.6270 17 6 0.8243 -7.1618 -0.6760 18 1 0.6487 -7.3974 0.3737 19 6 1.5790 -8.3194 -1.3205 20 6 0.7583 -9.6198 -1.1562 21 1 1.3303 -10.5304 -1.3341 22 6 0.1161 -9.5261 0.2501 23 6 -1.1416 -8.6641 0.2333 24 6 -1.4352 -8.1172 -1.1856 25 1 -2.4876 -7.9148 -1.3850 26 6 -0.5156 -6.8839 -1.3487 27 16 -0.6996 -9.4169 -2.2639 28 8 -1.5031 -10.5886 -2.2333 29 8 -0.2960 -8.8520 -3.5038 30 6 2.2459 -3.6640 -0.0011 31 1 -0.4850 0.8401 -0.0004 32 1 1.0053 -2.5499 2.1393 33 1 -0.3183 -1.7414 1.2663 34 1 -1.0576 -3.9416 2.1154 35 1 -1.0292 -3.9377 0.3354 36 1 0.0003 -6.0028 1.1327 37 1 1.1028 -5.0825 2.1885 38 1 1.7252 -8.1130 -2.3807 39 1 2.5480 -8.4371 -0.8354 40 1 -0.1432 -10.5285 0.5910 41 1 0.8363 -9.0898 0.9424 42 1 -1.0087 -7.8265 0.9180 43 1 -1.9889 -9.2634 0.5664 44 1 -0.9837 -6.0168 -0.8828 45 1 -0.3564 -6.6860 -2.4087 46 1 2.9337 -3.5575 0.8379 47 1 2.8053 -3.6664 -0.9367 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362949472.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:05 Heat of formation + Delta-G solvation = -100.913220 kcal Electronic energy + Delta-G solvation = -29768.591998 eV Core-core repulsion = 25850.454928 eV Total energy + Delta-G solvation = -3918.137070 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.90040 -38.66362 -37.38947 -36.83435 -36.17779 -33.64048 -32.46656 -32.12287 -31.38792 -30.23003 -27.00788 -25.14597 -24.88143 -24.47770 -21.85102 -21.32780 -21.16907 -19.75573 -18.80444 -18.38538 -17.87956 -17.39663 -16.37364 -16.00950 -15.80900 -15.56779 -14.90784 -14.84752 -14.41036 -14.30074 -13.96698 -13.71227 -13.57265 -13.34221 -13.24017 -12.85209 -12.79132 -12.62090 -12.51320 -12.30654 -12.21714 -12.09592 -12.04951 -11.87530 -11.31218 -11.09275 -11.00231 -10.88600 -10.84654 -10.78297 -10.63413 -10.35662 -10.07262 -10.00619 -9.88638 -9.55703 -9.31902 -8.90163 -8.43980 -8.00127 -6.07376 -4.14535 -0.17860 2.16110 2.84003 3.24790 3.28157 3.32837 3.34921 3.37895 3.59101 3.96170 4.09091 4.29780 4.37062 4.39354 4.45932 4.53417 4.58738 4.71720 4.81380 5.06270 5.13551 5.22677 5.29219 5.32217 5.46525 5.48132 5.49722 5.54127 5.55287 5.63873 5.70400 5.88246 5.97763 6.02305 6.23283 6.30191 6.38599 6.57741 6.71469 6.86754 7.07205 7.24522 7.62622 7.82726 7.91067 8.00426 8.30687 8.52056 8.88689 9.50750 10.98159 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024103 B = 0.002985 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.419928 B = 9376.972600 C = 9528.135878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.041 3.959 10 H 0.030 0.970 11 C -0.112 4.112 12 C -0.136 4.136 13 C 0.104 3.896 14 N -0.600 5.600 15 C 0.515 3.485 16 O -0.543 6.543 17 C -0.130 4.130 18 H 0.111 0.889 19 C -0.097 4.097 20 C -0.528 4.528 21 H 0.153 0.847 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.525 4.525 25 H 0.156 0.844 26 C -0.109 4.109 27 S 2.360 3.640 28 O -0.936 6.936 29 O -0.922 6.922 30 C 0.116 3.884 31 H 0.261 0.739 32 H 0.036 0.964 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.055 0.945 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.794 -19.400 4.284 20.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.151 4.151 12 C -0.174 4.174 13 C -0.019 4.019 14 N -0.332 5.332 15 C 0.301 3.699 16 O -0.421 6.421 17 C -0.151 4.151 18 H 0.128 0.872 19 C -0.136 4.136 20 C -0.638 4.638 21 H 0.171 0.829 22 C -0.160 4.160 23 C -0.161 4.161 24 C -0.635 4.635 25 H 0.173 0.827 26 C -0.148 4.148 27 S 2.544 3.456 28 O -0.933 6.933 29 O -0.919 6.919 30 C -0.004 4.004 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.106 0.894 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.074 0.926 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.784 -19.647 2.935 20.222 hybrid contribution 0.577 1.386 0.957 1.780 sum -3.207 -18.261 3.892 18.945 Atomic orbital electron populations 1.69857 1.05893 1.26651 1.50346 1.24925 0.94865 0.99091 0.94846 0.86633 0.79595 0.82937 0.78698 1.20193 1.21297 1.20264 1.21027 0.92976 0.90268 1.51189 0.92526 1.18969 0.92946 0.91161 0.94774 0.95226 1.21633 0.99469 0.95317 0.98633 1.21947 0.97674 0.96753 1.01034 1.21765 0.91581 0.99109 0.89414 1.48300 1.42004 1.16092 1.26828 1.20201 0.83869 0.84163 0.81638 1.90686 1.35431 1.80329 1.35653 1.21617 0.95332 0.94631 1.03502 0.87160 1.21563 0.99080 0.88436 1.04488 1.30612 1.16088 1.06341 1.10789 0.82912 1.21966 0.96832 1.01906 0.95253 1.21987 0.98240 1.00846 0.95033 1.30603 1.09923 1.12554 1.10436 0.82667 1.21727 0.91929 0.97110 1.04006 1.10317 0.79697 0.77691 0.77919 1.93589 1.66568 1.45451 1.87740 1.93639 1.81432 1.78482 1.38348 1.22034 0.95118 0.81685 1.01595 0.92888 0.94558 0.88593 0.92382 0.92315 0.91062 0.91812 0.88166 0.88795 0.89567 0.88773 0.88668 0.89417 0.88086 0.88484 0.92648 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.28 11.32 55.43 0.63 -23.65 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -13.58 8.56 -34.44 -0.29 -13.88 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.95 2.25 -91.65 -0.21 0.75 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.37 4.96 -26.69 -0.13 -2.50 16 12 C -0.14 -2.16 6.06 -26.83 -0.16 -2.32 16 13 C 0.10 1.40 5.88 -3.93 -0.02 1.38 16 14 N -0.60 -10.07 2.98 -173.03 -0.52 -10.59 16 15 C 0.51 8.38 6.74 -10.98 -0.07 8.31 16 16 O -0.54 -10.97 15.54 5.56 0.09 -10.88 16 17 C -0.13 -1.45 1.20 -92.31 -0.11 -1.56 16 18 H 0.11 0.93 2.74 -51.93 -0.14 0.79 16 19 C -0.10 -1.01 4.08 -26.13 -0.11 -1.11 16 20 C -0.53 -4.01 4.81 -24.87 -0.12 -4.13 16 21 H 0.15 0.83 8.14 -51.93 -0.42 0.40 16 22 C -0.12 -0.71 5.24 -26.00 -0.14 -0.85 16 23 C -0.12 -0.74 5.23 -26.01 -0.14 -0.87 16 24 C -0.53 -4.14 4.81 -24.85 -0.12 -4.26 16 25 H 0.16 0.92 8.14 -51.93 -0.42 0.49 16 26 C -0.11 -1.16 4.39 -26.10 -0.11 -1.28 16 27 S 2.36 23.65 5.40 -107.50 -0.58 23.07 16 28 O -0.94 -11.63 18.17 -57.63 -1.05 -12.68 16 29 O -0.92 -12.78 16.15 -57.63 -0.93 -13.71 16 30 C 0.12 2.39 5.64 -3.71 -0.02 2.37 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 2.33 6.05 -51.93 -0.31 2.01 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.70 4.16 -51.93 -0.22 0.48 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.24 7.08 -51.93 -0.37 0.87 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.48 6.78 -51.93 -0.35 0.13 16 42 H 0.09 0.50 5.91 -51.93 -0.31 0.19 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.10 1.08 7.46 -51.93 -0.39 0.69 16 45 H 0.10 1.20 7.26 -51.93 -0.38 0.82 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.08 1.78 7.04 -51.93 -0.37 1.41 16 LS Contribution 355.69 15.07 5.36 5.36 Total: -1.00 -33.99 355.69 -10.89 -44.88 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.02 Total: 0.84 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -1.85 Total: -18.34 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.11 Total: -34.24 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -1.89 Total: -37.27 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 23.65 SS G_CDS: -0.58 Total: 23.07 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.99 -10.89 -44.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362949472.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.028 kcal (2) G-P(sol) polarization free energy of solvation -33.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds