Wall clock time and date at job start Sat Apr 11 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86791 * 119.99987 * 2 1 4 4 H 1.48504 * 109.47229 * 240.00253 * 3 2 1 5 5 H 1.48506 * 109.47220 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47504 * 120.00107 * 3 2 1 7 7 C 1.37872 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00233 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00145 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.49733 * 59.93989 * 9 7 2 11 11 C 1.53042 * 109.50294 * 299.84312 * 9 7 2 12 12 C 1.53042 * 109.54130 * 178.68320 * 11 9 7 13 13 C 1.52761 * 109.38357 * 61.23534 * 12 11 9 14 14 N 1.46924 * 109.00838 * 305.59333 * 13 12 11 15 15 C 1.34779 * 120.62640 * 233.58038 * 14 13 12 16 16 O 1.21279 * 119.99962 * 184.57124 * 15 14 13 17 17 C 1.50699 * 119.99948 * 4.57079 * 15 14 13 18 18 H 1.09006 * 108.80114 * 323.32641 * 17 15 14 19 19 C 1.52480 * 108.82514 * 204.89296 * 17 15 14 20 20 C 1.54653 * 109.31608 * 176.19769 * 19 17 15 21 21 H 1.08995 * 113.99132 * 196.07090 * 20 19 17 22 22 C 1.54882 * 105.40484 * 322.60118 * 20 19 17 23 23 C 1.52487 * 111.47691 * 81.27766 * 22 20 19 24 24 C 1.54874 * 111.47714 * 0.02562 * 23 22 20 25 25 H 1.09004 * 114.60009 * 152.55323 * 24 23 22 26 26 C 1.52479 * 108.74034 * 81.71777 * 17 15 14 27 27 S 1.84220 * 105.27708 * 70.20215 * 20 19 17 28 28 O 1.42104 * 110.09892 * 177.62198 * 27 20 19 29 29 O 1.42101 * 110.09908 * 42.47016 * 27 20 19 30 30 C 1.46919 * 118.74151 * 53.31003 * 14 13 12 31 31 H 0.97006 * 119.99859 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.45891 * 298.70532 * 11 9 7 33 33 H 1.08996 * 109.46091 * 58.67256 * 11 9 7 34 34 H 1.08995 * 109.49903 * 181.31652 * 12 11 9 35 35 H 1.09006 * 109.49611 * 301.38036 * 12 11 9 36 36 H 1.08996 * 109.51094 * 185.70308 * 13 12 11 37 37 H 1.09002 * 109.42714 * 65.42590 * 13 12 11 38 38 H 1.08995 * 109.49938 * 296.14905 * 19 17 15 39 39 H 1.08999 * 109.50139 * 56.24518 * 19 17 15 40 40 H 1.09005 * 109.08537 * 201.80807 * 22 20 19 41 41 H 1.09004 * 109.08564 * 320.85714 * 22 20 19 42 42 H 1.08997 * 109.08544 * 239.47967 * 23 22 20 43 43 H 1.09001 * 109.08792 * 120.53481 * 23 22 20 44 44 H 1.08999 * 109.49854 * 303.79539 * 26 17 15 45 45 H 1.09000 * 109.50095 * 63.87257 * 26 17 15 46 46 H 1.09006 * 109.59166 * 66.42941 * 30 14 13 47 47 H 1.09004 * 109.58669 * 186.85289 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6230 -2.5566 -0.8896 11 6 0.3743 -2.5829 1.2511 12 6 -0.4161 -3.8933 1.2356 13 6 0.5558 -5.0718 1.2458 14 7 1.5001 -4.9230 0.1300 15 6 1.6746 -5.9204 -0.7595 16 8 2.5160 -5.8189 -1.6270 17 6 0.8243 -7.1618 -0.6760 18 1 0.6487 -7.3974 0.3737 19 6 1.5790 -8.3194 -1.3205 20 6 0.7583 -9.6198 -1.1562 21 1 1.3303 -10.5304 -1.3341 22 6 0.1161 -9.5261 0.2501 23 6 -1.1416 -8.6641 0.2333 24 6 -1.4352 -8.1172 -1.1856 25 1 -2.4876 -7.9148 -1.3850 26 6 -0.5156 -6.8839 -1.3487 27 16 -0.6996 -9.4169 -2.2639 28 8 -1.5031 -10.5886 -2.2333 29 8 -0.2960 -8.8520 -3.5038 30 6 2.2459 -3.6640 -0.0011 31 1 -0.4850 0.8401 -0.0004 32 1 1.0053 -2.5499 2.1393 33 1 -0.3183 -1.7414 1.2663 34 1 -1.0576 -3.9416 2.1154 35 1 -1.0292 -3.9377 0.3354 36 1 0.0003 -6.0028 1.1327 37 1 1.1028 -5.0825 2.1885 38 1 1.7252 -8.1130 -2.3807 39 1 2.5480 -8.4371 -0.8354 40 1 -0.1432 -10.5285 0.5910 41 1 0.8363 -9.0898 0.9424 42 1 -1.0087 -7.8265 0.9180 43 1 -1.9889 -9.2634 0.5664 44 1 -0.9837 -6.0168 -0.8828 45 1 -0.3564 -6.6860 -2.4087 46 1 2.9337 -3.5575 0.8379 47 1 2.8053 -3.6664 -0.9367 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362949472.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:04 Heat of formation + Delta-G solvation = -125.096157 kcal Electronic energy + Delta-G solvation = -29769.640648 eV Core-core repulsion = 25850.454928 eV Total energy + Delta-G solvation = -3919.185721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.94288 -39.73658 -38.33777 -38.19171 -37.03528 -35.39033 -33.36869 -33.07678 -32.73376 -31.78277 -27.97277 -26.87707 -25.91687 -25.49541 -23.36567 -22.47239 -21.73251 -21.09320 -19.80567 -19.43288 -18.89391 -18.44162 -18.09208 -17.02275 -16.75289 -16.67485 -16.54943 -15.97519 -15.65012 -15.24467 -15.02448 -14.67146 -14.64751 -14.56335 -14.45871 -14.17002 -13.93502 -13.66396 -13.58246 -13.28059 -13.20584 -13.14393 -13.06740 -12.86239 -12.75094 -12.64713 -12.55268 -12.08500 -11.95973 -11.83549 -11.67166 -11.56473 -11.40814 -11.34700 -11.23875 -10.85267 -10.73081 -10.60397 -10.40247 -9.48052 -8.11154 -6.25767 -0.90783 1.40789 1.42316 1.46730 1.49206 1.58292 2.06158 2.43006 2.65840 2.78618 3.15703 3.22536 3.37549 3.47631 3.67437 3.77343 3.90412 3.92468 3.96565 4.03116 4.20628 4.29458 4.36018 4.40398 4.53846 4.56024 4.63021 4.67408 4.77903 4.81191 4.82366 4.89715 4.99008 4.99817 5.07534 5.13856 5.16453 5.19045 5.29493 5.34609 5.49818 5.58850 5.62180 5.95093 6.15782 6.35566 6.56981 6.83609 7.21216 7.42308 8.91990 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024103 B = 0.002985 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.419928 B = 9376.972600 C = 9528.135878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.019 3.981 3 Si 0.951 3.049 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.041 3.959 10 H -0.014 1.014 11 C -0.106 4.106 12 C -0.129 4.129 13 C 0.102 3.898 14 N -0.603 5.603 15 C 0.507 3.493 16 O -0.592 6.592 17 C -0.118 4.118 18 H 0.153 0.847 19 C -0.102 4.102 20 C -0.501 4.501 21 H 0.178 0.822 22 C -0.127 4.127 23 C -0.129 4.129 24 C -0.501 4.501 25 H 0.178 0.822 26 C -0.116 4.116 27 S 2.337 3.663 28 O -0.965 6.965 29 O -0.978 6.978 30 C 0.129 3.871 31 H 0.261 0.739 32 H 0.037 0.963 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.120 0.880 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.112 0.888 44 H 0.106 0.894 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.616 -21.427 7.771 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.777 3.223 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.579 4.579 8 H 0.068 0.932 9 C 0.022 3.978 10 H 0.005 0.995 11 C -0.145 4.145 12 C -0.167 4.167 13 C -0.019 4.019 14 N -0.334 5.334 15 C 0.296 3.704 16 O -0.473 6.473 17 C -0.138 4.138 18 H 0.170 0.830 19 C -0.141 4.141 20 C -0.613 4.613 21 H 0.195 0.805 22 C -0.166 4.166 23 C -0.168 4.168 24 C -0.613 4.613 25 H 0.196 0.804 26 C -0.155 4.155 27 S 2.527 3.473 28 O -0.963 6.963 29 O -0.975 6.975 30 C 0.006 3.994 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.067 0.933 36 H 0.138 0.862 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.121 0.879 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.125 0.875 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.638 -21.709 6.405 23.105 hybrid contribution 0.865 2.072 -0.161 2.251 sum -3.773 -19.637 6.244 20.948 Atomic orbital electron populations 1.69992 1.06954 1.27213 1.50817 1.25635 0.95681 1.02080 0.94608 0.85716 0.78499 0.79310 0.78749 1.20391 1.20784 1.19263 1.21425 0.93032 0.92097 1.51340 0.93179 1.18871 0.93165 0.91430 0.94308 0.99545 1.21419 0.98741 0.97385 0.96919 1.21863 0.97864 0.94710 1.02246 1.22078 0.90879 1.00007 0.88934 1.48356 1.42280 1.14680 1.28121 1.21176 0.83577 0.85307 0.80299 1.90665 1.37741 1.81490 1.37429 1.21695 0.94230 0.91810 1.06081 0.83003 1.21558 1.00102 0.89680 1.02749 1.30510 1.13906 1.05748 1.11157 0.80452 1.22174 0.97032 1.03821 0.93541 1.22208 0.99401 1.01998 0.93160 1.30515 1.10248 1.09357 1.11199 0.80440 1.21744 0.92447 0.98843 1.02421 1.10689 0.80659 0.77743 0.78166 1.93546 1.67713 1.46734 1.88258 1.93571 1.82449 1.79239 1.42237 1.21542 0.94570 0.82975 1.00264 0.92960 0.94454 0.92098 0.88840 0.93319 0.86181 0.89599 0.91280 0.87858 0.87093 0.86710 0.86588 0.86930 0.87511 0.91402 0.92032 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.12 11.32 21.45 0.24 -50.88 16 2 C 0.02 1.05 5.30 84.65 0.45 1.50 16 3 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.54 -29.49 8.56 25.60 0.22 -29.27 16 8 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 9 C 0.04 2.02 2.25 -11.46 -0.03 1.99 16 10 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 11 C -0.11 -4.47 4.96 30.62 0.15 -4.32 16 12 C -0.13 -3.74 6.06 30.53 0.19 -3.56 16 13 C 0.10 2.32 5.88 86.22 0.51 2.82 16 14 N -0.60 -19.54 2.98 -819.74 -2.44 -21.98 16 15 C 0.51 16.23 6.74 87.66 0.59 16.82 16 16 O -0.59 -24.89 15.54 -3.03 -0.05 -24.94 16 17 C -0.12 -2.33 1.20 -11.89 -0.01 -2.35 16 18 H 0.15 1.67 2.74 -2.38 -0.01 1.67 16 19 C -0.10 -1.96 4.08 30.98 0.13 -1.83 16 20 C -0.50 -6.06 4.81 31.80 0.15 -5.91 16 21 H 0.18 1.31 8.14 -2.39 -0.02 1.29 16 22 C -0.13 -0.75 5.24 31.07 0.16 -0.58 16 23 C -0.13 -0.78 5.23 31.06 0.16 -0.61 16 24 C -0.50 -6.33 4.81 31.82 0.15 -6.18 16 25 H 0.18 1.49 8.14 -2.39 -0.02 1.47 16 26 C -0.12 -2.27 4.39 31.00 0.14 -2.13 16 27 S 2.34 44.81 5.40 -56.49 -0.31 44.51 16 28 O -0.97 -22.96 18.17 -127.56 -2.32 -25.27 16 29 O -0.98 -28.84 16.15 -127.56 -2.06 -30.90 16 30 C 0.13 5.45 5.64 86.36 0.49 5.93 16 31 H 0.26 14.02 8.31 -92.70 -0.77 13.25 16 32 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 3.00 6.05 -2.39 -0.01 2.99 16 34 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.12 1.55 4.16 -2.39 -0.01 1.54 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.07 1.79 7.08 -2.39 -0.02 1.77 16 39 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 41 H 0.11 0.33 6.78 -2.38 -0.02 0.31 16 42 H 0.12 0.30 5.91 -2.39 -0.01 0.29 16 43 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.11 2.00 7.46 -2.39 -0.02 1.98 16 45 H 0.07 1.75 7.26 -2.39 -0.02 1.74 16 46 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 47 H 0.05 2.32 7.04 -2.38 -0.02 2.30 16 Total: -1.00 -82.13 355.69 -0.48 -82.60 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.98 Total: 9.35 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: 3.44 Total: -27.68 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -2.20 Total: -72.86 kcal Atomic # 8 Polarization: -76.68 SS G_CDS: -4.43 Total: -81.11 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 44.81 SS G_CDS: -0.31 Total: 44.51 kcal Total: -82.13 -0.48 -82.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362949472.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.494 kcal (2) G-P(sol) polarization free energy of solvation -82.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds