Wall clock time and date at job start Sat Apr 11 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 119.99979 * 2 1 4 4 H 1.48502 * 109.46937 * 89.99921 * 3 2 1 5 5 H 1.48496 * 109.47135 * 209.99952 * 3 2 1 6 6 H 1.48492 * 109.47202 * 330.00004 * 3 2 1 7 7 C 1.37877 * 119.99590 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99577 * 173.46277 * 7 2 1 9 9 C 1.50696 * 120.00406 * 353.46272 * 7 2 1 10 10 H 1.08997 * 109.47112 * 326.77995 * 9 7 2 11 11 C 1.50699 * 109.47484 * 206.77801 * 9 7 2 12 12 O 1.21276 * 120.00153 * 240.00130 * 11 9 7 13 13 N 1.34778 * 119.99920 * 59.99772 * 11 9 7 14 14 C 1.46500 * 120.00216 * 180.02562 * 13 11 9 15 15 C 1.50699 * 109.47309 * 180.02562 * 14 13 11 16 16 C 1.40062 * 125.82819 * 95.00039 * 15 14 13 17 17 C 1.35207 * 107.72729 * 179.97438 * 16 15 14 18 18 N 1.35638 * 107.71980 * 0.08004 * 17 16 15 19 19 N 1.31102 * 125.82920 * 274.69862 * 15 14 13 20 20 C 1.46690 * 123.71256 * 179.80735 * 18 17 16 21 21 C 1.53542 * 107.97683 * 343.01750 * 20 18 17 22 22 C 1.53239 * 109.26840 * 47.16626 * 21 20 18 23 23 O 1.35969 * 128.72320 * 180.11407 * 17 16 15 24 24 C 1.50699 * 109.47040 * 86.77763 * 9 7 2 25 25 C 1.38239 * 120.00051 * 52.97133 * 24 9 7 26 26 C 1.38232 * 119.99981 * 179.78971 * 25 24 9 27 27 C 1.38231 * 119.99899 * 0.43783 * 26 25 24 28 28 C 1.38231 * 120.00168 * 359.81489 * 27 26 25 29 29 C 1.38233 * 120.00061 * 233.24244 * 24 9 7 30 30 H 0.96995 * 120.00069 * 174.55002 * 1 2 3 31 31 H 0.97003 * 120.00149 * 0.02562 * 13 11 9 32 32 H 1.08997 * 109.47422 * 300.00535 * 14 13 11 33 33 H 1.09001 * 109.46712 * 60.00715 * 14 13 11 34 34 H 1.07999 * 126.13617 * 0.02562 * 16 15 14 35 35 H 1.08993 * 109.76041 * 223.39768 * 20 18 17 36 36 H 1.08998 * 109.80110 * 102.65631 * 20 18 17 37 37 H 1.09002 * 109.50381 * 287.23281 * 21 20 18 38 38 H 1.08996 * 109.53636 * 167.12804 * 21 20 18 39 39 H 1.09001 * 109.50932 * 175.73878 * 22 21 20 40 40 H 1.09001 * 109.51067 * 55.60370 * 22 21 20 41 41 H 1.08000 * 119.99881 * 359.97438 * 25 24 9 42 42 H 1.08000 * 119.99827 * 180.27652 * 26 25 24 43 43 H 1.08003 * 119.99760 * 179.83685 * 27 26 25 44 44 H 1.08004 * 120.00251 * 179.97438 * 28 27 26 45 45 H 1.08003 * 120.00103 * 359.97438 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4467 2.6526 -0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0793 -1.1972 -0.1060 9 6 1.2584 -2.4948 0.1497 10 1 0.3919 -2.3449 0.7937 11 6 2.1676 -3.5281 0.7634 12 8 2.4194 -4.5495 0.1599 13 7 2.7011 -3.3171 1.9830 14 6 3.5855 -4.3212 2.5794 15 6 4.0425 -3.8467 3.9348 16 6 3.4503 -4.1748 5.1609 17 6 4.1513 -3.5537 6.1360 18 7 5.1520 -2.8550 5.5440 19 7 5.0655 -3.0607 4.1680 20 6 6.1267 -2.0448 6.2824 21 6 5.5656 -1.7939 7.6894 22 6 5.0499 -3.1146 8.2710 23 8 3.9469 -3.5813 7.4800 24 6 0.8009 -2.9697 -1.2054 25 6 1.7107 -3.0896 -2.2393 26 6 1.2918 -3.5293 -3.4810 27 6 -0.0385 -3.8406 -3.6914 28 6 -0.9492 -3.7158 -2.6590 29 6 -0.5296 -3.2801 -1.4161 30 1 -0.4850 -0.8362 -0.0798 31 1 2.4995 -2.5003 2.4659 32 1 3.0463 -5.2623 2.6872 33 1 4.4520 -4.4706 1.9353 34 1 2.5888 -4.8106 5.3022 35 1 6.2782 -1.0941 5.7712 36 1 7.0736 -2.5800 6.3533 37 1 4.7464 -1.0771 7.6320 38 1 6.3527 -1.3967 8.3302 39 1 4.7201 -2.9560 9.2977 40 1 5.8488 -3.8560 8.2550 41 1 2.7493 -2.8425 -2.0760 42 1 2.0034 -3.6272 -4.2875 43 1 -0.3662 -4.1817 -4.6624 44 1 -1.9887 -3.9585 -2.8235 45 1 -1.2411 -3.1827 -0.6094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363374071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:09 Heat of formation + Delta-G solvation = 27.571472 kcal Electronic energy + Delta-G solvation = -28867.908078 eV Core-core repulsion = 24852.191322 eV Total energy + Delta-G solvation = -4015.716756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.93440 -39.28138 -38.76599 -37.72323 -35.14330 -34.00753 -33.90789 -31.11220 -30.77133 -29.98282 -29.50537 -28.05444 -26.72770 -25.41753 -23.61080 -23.19502 -21.59664 -20.98974 -20.45617 -19.95738 -19.43423 -18.03054 -17.24341 -16.69779 -16.23643 -15.95114 -15.67242 -15.56665 -15.22783 -15.10590 -14.47892 -14.38220 -13.97405 -13.84553 -13.80731 -13.63909 -12.97717 -12.84107 -12.66852 -12.42730 -12.35278 -12.09515 -11.99475 -11.86644 -11.61874 -11.55234 -11.50750 -10.89724 -10.82689 -10.59699 -10.26338 -10.17762 -10.12302 -9.27571 -8.92855 -8.71704 -8.57204 -8.46350 -8.37016 -7.98357 -7.60875 -6.50463 -4.27132 1.71102 2.09991 2.32325 2.36951 2.57486 2.80091 3.36936 3.41068 3.57271 3.66872 3.80867 4.00625 4.19575 4.38403 4.42386 4.43993 4.70464 4.77168 4.82137 4.91079 5.06122 5.21292 5.22176 5.34397 5.37790 5.69854 5.71956 5.75722 5.82902 5.85470 5.88711 6.13014 6.13749 6.27191 6.44811 6.51437 6.52473 6.68050 6.92005 7.02145 7.13071 7.13831 7.33180 7.40004 7.61634 7.63960 7.87458 8.00101 8.26587 8.34166 8.66807 9.17707 9.44763 10.87392 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013086 B = 0.002940 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.234371 B = 9521.398895 C =10828.457894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.032 3.968 3 Si 1.069 2.931 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.591 4.591 8 H 0.059 0.941 9 C 0.044 3.956 10 H 0.065 0.935 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.723 5.723 14 C 0.205 3.795 15 C 0.085 3.915 16 C -0.267 4.267 17 C 0.263 3.737 18 N -0.403 5.403 19 N -0.262 5.262 20 C 0.129 3.871 21 C -0.176 4.176 22 C 0.050 3.950 23 O -0.289 6.289 24 C -0.020 4.020 25 C -0.078 4.078 26 C -0.133 4.133 27 C -0.146 4.146 28 C -0.129 4.129 29 C -0.127 4.127 30 H 0.275 0.725 31 H 0.407 0.593 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.157 0.843 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.074 -4.682 14.862 18.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.175 4.175 3 Si 0.897 3.103 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.629 4.629 8 H 0.077 0.923 9 C 0.023 3.977 10 H 0.083 0.917 11 C 0.325 3.675 12 O -0.442 6.442 13 N -0.376 5.376 14 C 0.079 3.921 15 C -0.082 4.082 16 C -0.296 4.296 17 C 0.096 3.904 18 N -0.198 5.198 19 N -0.087 5.087 20 C 0.009 3.991 21 C -0.214 4.214 22 C -0.025 4.025 23 O -0.197 6.197 24 C -0.021 4.021 25 C -0.096 4.096 26 C -0.151 4.151 27 C -0.164 4.164 28 C -0.147 4.147 29 C -0.146 4.146 30 H 0.087 0.913 31 H 0.242 0.758 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.175 0.825 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.136 0.864 40 H 0.089 0.911 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.899 -3.122 14.272 17.647 hybrid contribution -0.252 -1.420 0.694 1.600 sum 9.647 -4.541 14.966 18.375 Atomic orbital electron populations 1.70735 1.06895 1.31442 1.43930 1.25817 0.96343 1.02465 0.92850 0.83536 0.74852 0.75059 0.76874 1.21324 1.21251 1.20969 1.21610 0.94749 0.89533 1.56969 0.92307 1.18155 0.95602 0.93425 0.90510 0.91719 1.21267 0.79878 0.86868 0.79447 1.90591 1.62497 1.29391 1.61747 1.45867 1.49536 1.22585 1.19633 1.19403 0.94534 0.91924 0.86258 1.22208 0.93546 0.96626 0.95802 1.20256 1.07872 1.12468 0.89015 1.19452 0.92134 0.95137 0.83702 1.49079 1.25584 1.39920 1.05186 1.77421 1.21308 1.21006 0.88947 1.21869 0.90472 0.96359 0.90450 1.22646 1.03906 0.99090 0.95777 1.23088 0.89148 0.94986 0.95310 1.86626 1.39311 1.82149 1.11571 1.20123 0.92541 0.92434 0.96960 1.20808 0.99556 0.97182 0.92066 1.20982 0.95620 1.01361 0.97126 1.20816 0.93811 1.03525 0.98280 1.20878 0.98517 1.01597 0.93708 1.20972 0.95891 1.00787 0.96920 0.91342 0.75783 0.89858 0.90414 0.82522 0.87892 0.89484 0.89129 0.87261 0.86388 0.91088 0.86925 0.87424 0.87555 0.87418 0.87280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.27 13.56 55.43 0.75 -24.52 16 2 C 0.03 0.86 5.45 -17.82 -0.10 0.76 16 3 Si 1.07 24.17 29.91 -169.99 -5.08 19.08 16 4 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.59 -15.33 7.42 -34.44 -0.26 -15.59 16 8 H 0.06 1.57 7.82 -52.48 -0.41 1.15 16 9 C 0.04 1.08 1.92 -94.08 -0.18 0.89 16 10 H 0.07 1.62 6.82 -51.93 -0.35 1.26 16 11 C 0.54 12.19 7.04 -10.99 -0.08 12.11 16 12 O -0.56 -13.85 15.46 5.56 0.09 -13.76 16 13 N -0.72 -14.03 5.45 -61.47 -0.33 -14.36 16 14 C 0.20 3.39 6.23 -5.19 -0.03 3.36 16 15 C 0.09 1.33 6.59 -82.22 -0.54 0.79 16 16 C -0.27 -3.79 10.75 -39.98 -0.43 -4.22 16 17 C 0.26 3.48 7.57 -16.95 -0.13 3.36 16 18 N -0.40 -5.25 4.06 -61.08 -0.25 -5.49 16 19 N -0.26 -4.20 12.63 33.75 0.43 -3.77 16 20 C 0.13 1.06 7.41 -3.66 -0.03 1.03 16 21 C -0.18 -0.96 6.17 -26.33 -0.16 -1.12 16 22 C 0.05 0.31 7.01 37.28 0.26 0.58 16 23 O -0.29 -3.20 10.65 -19.64 -0.21 -3.41 16 24 C -0.02 -0.47 4.03 -104.62 -0.42 -0.89 16 25 C -0.08 -1.81 8.36 -39.58 -0.33 -2.14 16 26 C -0.13 -2.70 10.05 -39.59 -0.40 -3.09 16 27 C -0.15 -2.78 10.05 -39.59 -0.40 -3.18 16 28 C -0.13 -2.53 10.05 -39.59 -0.40 -2.93 16 29 C -0.13 -2.81 9.25 -39.58 -0.37 -3.18 16 30 H 0.28 7.68 6.30 -40.82 -0.26 7.42 16 31 H 0.41 7.89 8.35 -40.82 -0.34 7.55 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.11 2.68 7.86 -52.49 -0.41 2.27 16 42 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 44 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 45 H 0.11 2.27 7.96 -52.48 -0.42 1.85 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -33.46 380.85 -8.92 -42.38 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -6.06 Total: 11.58 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -3.98 Total: -13.46 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.59 Total: -48.14 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.12 Total: -17.17 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.08 Total: 19.08 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.46 -8.92 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363374071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.947 kcal (2) G-P(sol) polarization free energy of solvation -33.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds