Wall clock time and date at job start Sat Apr 11 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 119.99979 * 2 1 4 4 H 1.48502 * 109.46937 * 89.99921 * 3 2 1 5 5 H 1.48496 * 109.47135 * 209.99952 * 3 2 1 6 6 H 1.48492 * 109.47202 * 330.00004 * 3 2 1 7 7 C 1.37877 * 119.99590 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99577 * 173.46277 * 7 2 1 9 9 C 1.50696 * 120.00406 * 353.46272 * 7 2 1 10 10 H 1.08997 * 109.47112 * 326.77995 * 9 7 2 11 11 C 1.50699 * 109.47484 * 206.77801 * 9 7 2 12 12 O 1.21276 * 120.00153 * 240.00130 * 11 9 7 13 13 N 1.34778 * 119.99920 * 59.99772 * 11 9 7 14 14 C 1.46500 * 120.00216 * 180.02562 * 13 11 9 15 15 C 1.50699 * 109.47309 * 180.02562 * 14 13 11 16 16 C 1.40062 * 125.82819 * 95.00039 * 15 14 13 17 17 C 1.35207 * 107.72729 * 179.97438 * 16 15 14 18 18 N 1.35638 * 107.71980 * 0.08004 * 17 16 15 19 19 N 1.31102 * 125.82920 * 274.69862 * 15 14 13 20 20 C 1.46690 * 123.71256 * 179.80735 * 18 17 16 21 21 C 1.53542 * 107.97683 * 343.01750 * 20 18 17 22 22 C 1.53239 * 109.26840 * 47.16626 * 21 20 18 23 23 O 1.35969 * 128.72320 * 180.11407 * 17 16 15 24 24 C 1.50699 * 109.47040 * 86.77763 * 9 7 2 25 25 C 1.38239 * 120.00051 * 52.97133 * 24 9 7 26 26 C 1.38232 * 119.99981 * 179.78971 * 25 24 9 27 27 C 1.38231 * 119.99899 * 0.43783 * 26 25 24 28 28 C 1.38231 * 120.00168 * 359.81489 * 27 26 25 29 29 C 1.38233 * 120.00061 * 233.24244 * 24 9 7 30 30 H 0.96995 * 120.00069 * 174.55002 * 1 2 3 31 31 H 0.97003 * 120.00149 * 0.02562 * 13 11 9 32 32 H 1.08997 * 109.47422 * 300.00535 * 14 13 11 33 33 H 1.09001 * 109.46712 * 60.00715 * 14 13 11 34 34 H 1.07999 * 126.13617 * 0.02562 * 16 15 14 35 35 H 1.08993 * 109.76041 * 223.39768 * 20 18 17 36 36 H 1.08998 * 109.80110 * 102.65631 * 20 18 17 37 37 H 1.09002 * 109.50381 * 287.23281 * 21 20 18 38 38 H 1.08996 * 109.53636 * 167.12804 * 21 20 18 39 39 H 1.09001 * 109.50932 * 175.73878 * 22 21 20 40 40 H 1.09001 * 109.51067 * 55.60370 * 22 21 20 41 41 H 1.08000 * 119.99881 * 359.97438 * 25 24 9 42 42 H 1.08000 * 119.99827 * 180.27652 * 26 25 24 43 43 H 1.08003 * 119.99760 * 179.83685 * 27 26 25 44 44 H 1.08004 * 120.00251 * 179.97438 * 28 27 26 45 45 H 1.08003 * 120.00103 * 359.97438 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4467 2.6526 -0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0793 -1.1972 -0.1060 9 6 1.2584 -2.4948 0.1497 10 1 0.3919 -2.3449 0.7937 11 6 2.1676 -3.5281 0.7634 12 8 2.4194 -4.5495 0.1599 13 7 2.7011 -3.3171 1.9830 14 6 3.5855 -4.3212 2.5794 15 6 4.0425 -3.8467 3.9348 16 6 3.4503 -4.1748 5.1609 17 6 4.1513 -3.5537 6.1360 18 7 5.1520 -2.8550 5.5440 19 7 5.0655 -3.0607 4.1680 20 6 6.1267 -2.0448 6.2824 21 6 5.5656 -1.7939 7.6894 22 6 5.0499 -3.1146 8.2710 23 8 3.9469 -3.5813 7.4800 24 6 0.8009 -2.9697 -1.2054 25 6 1.7107 -3.0896 -2.2393 26 6 1.2918 -3.5293 -3.4810 27 6 -0.0385 -3.8406 -3.6914 28 6 -0.9492 -3.7158 -2.6590 29 6 -0.5296 -3.2801 -1.4161 30 1 -0.4850 -0.8362 -0.0798 31 1 2.4995 -2.5003 2.4659 32 1 3.0463 -5.2623 2.6872 33 1 4.4520 -4.4706 1.9353 34 1 2.5888 -4.8106 5.3022 35 1 6.2782 -1.0941 5.7712 36 1 7.0736 -2.5800 6.3533 37 1 4.7464 -1.0771 7.6320 38 1 6.3527 -1.3967 8.3302 39 1 4.7201 -2.9560 9.2977 40 1 5.8488 -3.8560 8.2550 41 1 2.7493 -2.8425 -2.0760 42 1 2.0034 -3.6272 -4.2875 43 1 -0.3662 -4.1817 -4.6624 44 1 -1.9887 -3.9585 -2.8235 45 1 -1.2411 -3.1827 -0.6094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363374071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:08 Heat of formation + Delta-G solvation = 5.396391 kcal Electronic energy + Delta-G solvation = -28868.869661 eV Core-core repulsion = 24852.191322 eV Total energy + Delta-G solvation = -4016.678339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -42.91132 -40.98612 -39.75678 -39.31939 -36.17784 -35.85515 -35.25797 -32.70135 -32.06566 -31.62081 -30.53875 -29.49999 -28.00563 -26.52000 -25.50165 -24.04729 -23.25493 -22.58507 -21.61373 -21.19941 -20.73301 -19.33567 -18.82097 -17.76317 -17.59372 -17.41718 -16.88145 -16.76643 -16.47821 -16.17519 -15.77229 -15.67757 -15.62517 -15.41501 -15.08329 -14.74673 -14.52109 -14.31585 -14.05263 -13.95568 -13.74046 -13.58884 -13.28218 -13.21388 -12.83506 -12.64884 -12.60592 -12.30701 -12.11939 -11.98982 -11.91806 -11.77861 -11.66862 -10.91180 -10.72416 -10.59955 -10.10601 -10.02219 -9.63605 -9.49805 -9.32554 -8.61908 -6.38237 0.61890 0.67879 0.74029 1.20754 1.42011 1.52901 1.60151 1.78367 1.83571 2.02730 2.55567 2.63695 3.10537 3.10977 3.21763 3.50484 3.56172 3.91163 3.94965 4.10505 4.12810 4.23459 4.26373 4.27194 4.36437 4.38484 4.41144 4.52121 4.58940 4.61208 4.66047 4.69744 4.85462 4.86463 4.92421 4.93522 5.15262 5.27428 5.34011 5.42741 5.50380 5.70787 5.74522 5.74957 6.06587 6.16405 6.25360 6.32859 6.51689 6.53272 6.63821 7.37506 7.40522 8.76367 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013086 B = 0.002940 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.234371 B = 9521.398895 C =10828.457894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 1.109 2.891 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.285 1.285 7 C -0.588 4.588 8 H 0.045 0.955 9 C 0.045 3.955 10 H 0.049 0.951 11 C 0.535 3.465 12 O -0.585 6.585 13 N -0.712 5.712 14 C 0.209 3.791 15 C 0.075 3.925 16 C -0.286 4.286 17 C 0.269 3.731 18 N -0.398 5.398 19 N -0.295 5.295 20 C 0.112 3.888 21 C -0.165 4.165 22 C 0.038 3.962 23 O -0.301 6.301 24 C -0.047 4.047 25 C -0.108 4.108 26 C -0.134 4.134 27 C -0.140 4.140 28 C -0.126 4.126 29 C -0.149 4.149 30 H 0.267 0.733 31 H 0.407 0.593 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.166 0.834 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.137 0.863 43 H 0.150 0.850 44 H 0.144 0.856 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.726 -4.561 15.688 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.210 4.210 3 Si 0.932 3.068 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.211 1.211 7 C -0.625 4.625 8 H 0.063 0.937 9 C 0.023 3.977 10 H 0.066 0.934 11 C 0.324 3.676 12 O -0.466 6.466 13 N -0.364 5.364 14 C 0.084 3.916 15 C -0.091 4.091 16 C -0.316 4.316 17 C 0.100 3.900 18 N -0.194 5.194 19 N -0.121 5.121 20 C -0.007 4.007 21 C -0.203 4.203 22 C -0.036 4.036 23 O -0.209 6.209 24 C -0.048 4.048 25 C -0.126 4.126 26 C -0.151 4.151 27 C -0.157 4.157 28 C -0.144 4.144 29 C -0.167 4.167 30 H 0.078 0.922 31 H 0.242 0.758 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.183 0.817 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.098 0.902 38 H 0.169 0.831 39 H 0.167 0.833 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.155 0.845 43 H 0.168 0.832 44 H 0.161 0.839 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.577 -3.007 15.143 18.714 hybrid contribution -0.392 -1.508 0.530 1.646 sum 10.185 -4.515 15.673 19.229 Atomic orbital electron populations 1.70819 1.07648 1.31022 1.46164 1.26962 0.96412 1.05378 0.92208 0.83018 0.74101 0.71942 0.77776 1.19616 1.20334 1.21088 1.21669 0.94048 0.90615 1.56212 0.93683 1.18079 0.95086 0.93345 0.91161 0.93352 1.21045 0.79967 0.86346 0.80236 1.90558 1.63419 1.30048 1.62576 1.45794 1.49011 1.22974 1.18590 1.19418 0.93707 0.91574 0.86883 1.21945 0.94212 0.97459 0.95482 1.20405 1.08701 1.13528 0.88941 1.19480 0.91472 0.94230 0.84781 1.49423 1.26064 1.39674 1.04248 1.77301 1.21872 1.21728 0.91221 1.22398 0.90663 0.96117 0.91476 1.22672 1.04711 0.98443 0.94447 1.23562 0.88545 0.95592 0.95915 1.86636 1.41524 1.82317 1.10377 1.20155 0.93749 0.94272 0.96668 1.20828 0.98653 0.99418 0.93689 1.21353 0.97223 1.00021 0.96550 1.21316 0.92855 1.01688 0.99878 1.21322 1.00581 0.99865 0.92610 1.21167 0.95235 1.01798 0.98525 0.92249 0.75846 0.88740 0.91270 0.81681 0.87773 0.87413 0.90242 0.83089 0.83320 0.89814 0.88928 0.84489 0.83194 0.83852 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.28 13.56 21.45 0.29 -52.99 16 2 C -0.01 -0.44 5.45 84.65 0.46 0.02 16 3 Si 1.11 49.18 29.91 68.60 2.05 51.23 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.59 -31.69 7.42 25.60 0.19 -31.50 16 8 H 0.04 2.50 7.82 -2.91 -0.02 2.48 16 9 C 0.04 2.27 1.92 -13.03 -0.03 2.25 16 10 H 0.05 2.57 6.82 -2.39 -0.02 2.56 16 11 C 0.54 25.53 7.04 87.66 0.62 26.15 16 12 O -0.59 -29.94 15.46 -3.02 -0.05 -29.99 16 13 N -0.71 -29.01 5.45 -466.80 -2.54 -31.55 16 14 C 0.21 7.25 6.23 85.63 0.53 7.78 16 15 C 0.07 2.40 6.59 43.11 0.28 2.69 16 16 C -0.29 -8.25 10.75 22.01 0.24 -8.01 16 17 C 0.27 6.99 7.57 83.41 0.63 7.62 16 18 N -0.40 -10.13 4.06 -458.08 -1.86 -11.99 16 19 N -0.29 -9.61 12.63 -47.14 -0.60 -10.21 16 20 C 0.11 1.63 7.41 86.53 0.64 2.27 16 21 C -0.16 -1.30 6.17 30.86 0.19 -1.11 16 22 C 0.04 0.36 7.01 72.06 0.50 0.87 16 23 O -0.30 -6.20 10.65 -93.20 -0.99 -7.20 16 24 C -0.05 -2.35 4.03 -19.87 -0.08 -2.43 16 25 C -0.11 -5.12 8.36 22.27 0.19 -4.94 16 26 C -0.13 -5.25 10.05 22.27 0.22 -5.03 16 27 C -0.14 -4.90 10.05 22.27 0.22 -4.68 16 28 C -0.13 -4.70 10.05 22.27 0.22 -4.48 16 29 C -0.15 -6.66 9.25 22.27 0.21 -6.45 16 30 H 0.27 15.47 6.30 -92.71 -0.58 14.89 16 31 H 0.41 16.59 8.35 -92.71 -0.77 15.82 16 32 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.17 4.25 8.06 -2.91 -0.02 4.22 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.11 1.12 8.14 -2.39 -0.02 1.11 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.15 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.09 4.64 7.86 -2.91 -0.02 4.61 16 42 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 43 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 44 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 45 H 0.11 4.72 7.96 -2.91 -0.02 4.69 16 Total: -1.00 -75.38 380.85 1.98 -73.40 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: 0.43 Total: 38.28 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 5.25 Total: -18.99 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -4.71 Total: -106.73 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -1.04 Total: -37.18 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 2.05 Total: 51.23 kcal Total: -75.38 1.98 -73.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363374071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.794 kcal (2) G-P(sol) polarization free energy of solvation -75.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds