Wall clock time and date at job start Sat Apr 11 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86791 * 120.00407 * 2 1 4 4 H 1.48506 * 109.47235 * 270.00383 * 3 2 1 5 5 H 1.48503 * 109.47198 * 30.00015 * 3 2 1 6 6 H 1.48502 * 109.47502 * 149.99928 * 3 2 1 7 7 C 1.37879 * 119.99237 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99326 * 185.18813 * 7 2 1 9 9 C 1.50700 * 120.00434 * 5.19220 * 7 2 1 10 10 H 1.09001 * 109.46893 * 24.87828 * 9 7 2 11 11 C 1.50703 * 109.46758 * 144.87812 * 9 7 2 12 12 O 1.21285 * 119.99389 * 120.00648 * 11 9 7 13 13 N 1.34771 * 120.00045 * 299.99532 * 11 9 7 14 14 C 1.46504 * 119.99628 * 180.02562 * 13 11 9 15 15 C 1.50697 * 109.47218 * 180.02562 * 14 13 11 16 16 C 1.40068 * 125.83072 * 94.99718 * 15 14 13 17 17 C 1.35204 * 107.73062 * 179.97438 * 16 15 14 18 18 N 1.35645 * 107.71589 * 0.07518 * 17 16 15 19 19 N 1.31102 * 125.82792 * 274.69338 * 15 14 13 20 20 C 1.46689 * 123.70675 * 179.80789 * 18 17 16 21 21 C 1.53531 * 107.98316 * 343.01943 * 20 18 17 22 22 C 1.53240 * 109.26957 * 47.16855 * 21 20 18 23 23 O 1.35962 * 128.72618 * 180.11951 * 17 16 15 24 24 C 1.50700 * 109.46897 * 264.87870 * 9 7 2 25 25 C 1.38237 * 120.00019 * 306.01343 * 24 9 7 26 26 C 1.38230 * 119.99547 * 179.81508 * 25 24 9 27 27 C 1.38230 * 120.00451 * 0.39005 * 26 25 24 28 28 C 1.38238 * 119.99696 * 359.86180 * 27 26 25 29 29 C 1.38227 * 120.00303 * 359.95259 * 28 27 26 30 30 H 0.97004 * 119.99402 * 0.02562 * 1 2 3 31 31 H 0.96993 * 120.00809 * 0.02562 * 13 11 9 32 32 H 1.09001 * 109.46976 * 299.99880 * 14 13 11 33 33 H 1.09000 * 109.47532 * 59.99909 * 14 13 11 34 34 H 1.07999 * 126.13638 * 0.02562 * 16 15 14 35 35 H 1.09000 * 109.75880 * 223.39494 * 20 18 17 36 36 H 1.09008 * 109.80276 * 102.66845 * 20 18 17 37 37 H 1.08998 * 109.50131 * 287.23276 * 21 20 18 38 38 H 1.08994 * 109.51114 * 167.10640 * 21 20 18 39 39 H 1.08997 * 109.51208 * 175.74322 * 22 21 20 40 40 H 1.08999 * 109.50865 * 55.60257 * 22 21 20 41 41 H 1.07995 * 120.00014 * 359.97438 * 25 24 9 42 42 H 1.08005 * 119.99752 * 180.23053 * 26 25 24 43 43 H 1.08002 * 120.00602 * 179.84098 * 27 26 25 44 44 H 1.08003 * 120.00053 * 179.97438 * 28 27 26 45 45 H 1.07999 * 120.00403 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0812 -1.1961 0.0841 9 6 1.2555 -2.4965 -0.1192 10 1 0.3031 -2.3235 -0.6204 11 6 2.0743 -3.4755 -0.9205 12 8 2.4199 -4.5265 -0.4235 13 7 2.4223 -3.1833 -2.1893 14 6 3.2179 -4.1354 -2.9684 15 6 3.4694 -3.5729 -4.3436 16 6 4.6072 -2.8599 -4.7424 17 6 4.4518 -2.5312 -6.0446 18 7 3.2541 -3.0194 -6.4534 19 7 2.6631 -3.6721 -5.3726 20 6 2.7304 -2.8572 -7.8140 21 6 3.5227 -1.7327 -8.4959 22 6 5.0204 -1.9536 -8.2585 23 8 5.2985 -1.8419 -6.8548 24 6 1.0046 -3.0588 1.2563 25 6 2.0594 -3.2436 2.1304 26 6 1.8286 -3.7558 3.3934 27 6 0.5443 -4.0906 3.7795 28 6 -0.5098 -3.9106 2.9034 29 6 -0.2797 -3.3949 1.6418 30 1 -0.4849 0.8401 -0.0004 31 1 2.1461 -2.3428 -2.5867 32 1 4.1703 -4.3087 -2.4673 33 1 2.6759 -5.0772 -3.0542 34 1 5.4568 -2.6171 -4.1213 35 1 1.6741 -2.5913 -7.7730 36 1 2.8551 -3.7859 -8.3709 37 1 3.2255 -0.7718 -8.0759 38 1 3.3188 -1.7413 -9.5665 39 1 5.5902 -1.2010 -8.8035 40 1 5.3016 -2.9472 -8.6073 41 1 3.0633 -2.9855 1.8274 42 1 2.6522 -3.8968 4.0777 43 1 0.3643 -4.4932 4.7654 44 1 -1.5133 -4.1726 3.2049 45 1 -1.1031 -3.2546 0.9572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363374072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:12 Heat of formation + Delta-G solvation = 9.485661 kcal Electronic energy + Delta-G solvation = -28823.554411 eV Core-core repulsion = 24807.053395 eV Total energy + Delta-G solvation = -4016.501015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.88685 -40.82627 -39.70965 -39.21454 -36.11929 -35.49680 -35.19352 -32.88785 -32.02894 -31.50127 -30.51200 -29.49778 -28.10390 -26.56935 -25.53196 -24.02402 -23.18012 -22.47218 -21.56854 -20.95757 -20.68797 -18.96746 -18.62079 -17.71825 -17.59484 -17.42979 -16.77985 -16.73953 -16.44089 -16.25854 -15.86987 -15.74977 -15.53719 -15.27938 -15.05240 -14.66469 -14.39442 -14.11792 -13.93658 -13.82779 -13.73710 -13.31924 -13.25717 -13.24447 -12.81020 -12.75576 -12.63113 -12.29494 -12.18284 -12.11138 -11.92267 -11.66439 -11.64094 -11.24950 -10.68228 -10.55514 -10.05562 -9.92075 -9.52255 -9.47394 -9.22411 -8.19864 -6.31026 0.65188 0.79366 0.84414 1.22687 1.42429 1.43820 1.45833 1.53534 1.96192 2.04509 2.43599 2.73722 3.09974 3.12775 3.31020 3.51888 3.58079 3.93687 3.96332 4.14267 4.25260 4.28040 4.33348 4.37425 4.41011 4.47154 4.54212 4.56926 4.59665 4.67445 4.75840 4.87586 4.90943 4.95221 5.00740 5.13083 5.16975 5.39878 5.46220 5.48306 5.60520 5.67111 5.81773 5.86278 5.97027 6.26685 6.27090 6.43738 6.53574 6.70490 6.77788 7.35729 7.52145 8.88428 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012911 B = 0.002956 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.143539 B = 9470.559721 C =10699.407099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.033 3.967 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.054 3.946 10 H 0.064 0.936 11 C 0.530 3.470 12 O -0.588 6.588 13 N -0.713 5.713 14 C 0.209 3.791 15 C 0.077 3.923 16 C -0.287 4.287 17 C 0.268 3.732 18 N -0.399 5.399 19 N -0.294 5.294 20 C 0.113 3.887 21 C -0.165 4.165 22 C 0.037 3.963 23 O -0.302 6.302 24 C -0.037 4.037 25 C -0.110 4.110 26 C -0.134 4.134 27 C -0.143 4.143 28 C -0.130 4.130 29 C -0.143 4.143 30 H 0.266 0.734 31 H 0.406 0.594 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.162 0.838 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.137 0.863 43 H 0.147 0.853 44 H 0.139 0.861 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.544 -3.169 -16.723 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.169 4.169 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.552 4.552 8 H 0.074 0.926 9 C 0.032 3.968 10 H 0.082 0.918 11 C 0.319 3.681 12 O -0.469 6.469 13 N -0.365 5.365 14 C 0.084 3.916 15 C -0.089 4.089 16 C -0.317 4.317 17 C 0.100 3.900 18 N -0.195 5.195 19 N -0.120 5.120 20 C -0.006 4.006 21 C -0.203 4.203 22 C -0.037 4.037 23 O -0.210 6.210 24 C -0.038 4.038 25 C -0.129 4.129 26 C -0.152 4.152 27 C -0.161 4.161 28 C -0.148 4.148 29 C -0.161 4.161 30 H 0.075 0.925 31 H 0.241 0.759 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.180 0.820 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.155 0.845 43 H 0.165 0.835 44 H 0.157 0.843 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.725 -4.058 -16.970 18.364 hybrid contribution 0.716 1.701 -0.132 1.851 sum 6.441 -2.357 -17.102 18.426 Atomic orbital electron populations 1.70035 1.07140 1.27872 1.49286 1.25603 0.95514 1.02081 0.93680 0.85617 0.78727 0.79272 0.78492 1.19571 1.21055 1.19489 1.20780 0.92864 0.89245 1.52350 0.92628 1.17990 0.96725 0.92347 0.89689 0.91828 1.21388 0.78962 0.86361 0.81343 1.90552 1.57777 1.27425 1.71171 1.45801 1.55209 1.22298 1.13172 1.19409 0.96888 0.91654 0.83666 1.21970 0.92961 0.99058 0.94875 1.20420 1.04062 1.13338 0.93872 1.19462 0.84233 0.94395 0.91944 1.49410 1.14079 1.44487 1.11480 1.77262 1.21010 1.19718 0.94049 1.22390 1.00869 1.01721 0.75577 1.22670 0.94267 0.97994 1.05372 1.23563 0.97268 1.05712 0.77116 1.86638 1.48972 1.65735 1.19640 1.20095 0.93347 0.93314 0.97035 1.20865 0.98155 0.99465 0.94390 1.21327 0.98107 0.99963 0.95835 1.21270 0.92339 1.02065 1.00430 1.21292 1.00009 1.00000 0.93460 1.21128 0.96249 1.00954 0.97776 0.92460 0.75903 0.89239 0.90801 0.82012 0.87672 0.87361 0.90336 0.83071 0.83435 0.89769 0.88487 0.84549 0.83495 0.84298 0.87697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.13 12.84 21.45 0.28 -49.85 16 2 C 0.03 1.74 5.45 84.65 0.46 2.20 16 3 Si 0.95 42.25 29.54 68.60 2.03 44.27 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.51 -27.14 7.47 25.60 0.19 -26.95 16 8 H 0.06 2.96 7.82 -2.91 -0.02 2.94 16 9 C 0.05 2.74 2.38 -13.03 -0.03 2.71 16 10 H 0.06 3.50 7.13 -2.39 -0.02 3.48 16 11 C 0.53 25.27 7.04 87.66 0.62 25.88 16 12 O -0.59 -29.99 15.42 -3.05 -0.05 -30.04 16 13 N -0.71 -29.18 5.45 -466.78 -2.54 -31.73 16 14 C 0.21 7.28 6.23 85.63 0.53 7.81 16 15 C 0.08 2.51 6.59 43.11 0.28 2.79 16 16 C -0.29 -8.64 10.75 22.01 0.24 -8.40 16 17 C 0.27 7.18 7.57 83.40 0.63 7.81 16 18 N -0.40 -10.17 4.06 -458.08 -1.86 -12.03 16 19 N -0.29 -9.46 12.63 -47.14 -0.60 -10.06 16 20 C 0.11 1.62 7.41 86.52 0.64 2.26 16 21 C -0.16 -1.34 6.17 30.85 0.19 -1.15 16 22 C 0.04 0.38 7.01 72.06 0.50 0.88 16 23 O -0.30 -6.52 10.65 -93.12 -0.99 -7.51 16 24 C -0.04 -1.83 4.30 -19.86 -0.09 -1.92 16 25 C -0.11 -5.17 8.31 22.27 0.18 -4.99 16 26 C -0.13 -5.23 10.05 22.27 0.22 -5.01 16 27 C -0.14 -5.06 10.05 22.27 0.22 -4.84 16 28 C -0.13 -4.94 10.05 22.27 0.22 -4.72 16 29 C -0.14 -6.55 9.67 22.27 0.22 -6.33 16 30 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 31 H 0.41 16.74 8.35 -92.71 -0.77 15.96 16 32 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.16 4.50 8.06 -2.91 -0.02 4.47 16 35 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.15 -0.01 8.14 -2.39 -0.02 -0.03 16 39 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.10 4.67 7.89 -2.91 -0.02 4.65 16 42 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 43 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 44 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 45 H 0.10 4.78 7.96 -2.91 -0.02 4.75 16 Total: -1.00 -72.30 383.21 1.75 -70.54 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: 0.24 Total: 38.34 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 5.25 Total: -11.95 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -4.72 Total: -103.66 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -1.04 Total: -37.55 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -72.30 1.75 -70.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363374072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.029 kcal (2) G-P(sol) polarization free energy of solvation -72.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds