Wall clock time and date at job start Sat Apr 11 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86803 * 120.00053 * 2 1 4 4 H 1.48504 * 109.46987 * 270.00309 * 3 2 1 5 5 H 1.48497 * 109.47058 * 29.99822 * 3 2 1 6 6 H 1.48501 * 109.47117 * 150.00525 * 3 2 1 7 7 C 1.40227 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00045 * 196.89991 * 7 2 1 9 9 C 1.41107 * 119.99744 * 16.90833 * 7 2 1 10 10 C 1.40888 * 120.10357 * 205.46179 * 9 7 2 11 11 C 1.36317 * 119.89592 * 180.02562 * 10 9 7 12 12 C 1.40015 * 120.10462 * 359.97438 * 11 10 9 13 13 C 1.47634 * 119.89372 * 179.97438 * 12 11 10 14 14 O 1.21588 * 120.00246 * 32.81284 * 13 12 11 15 15 N 1.34783 * 119.99836 * 212.81225 * 13 12 11 16 16 C 1.46920 * 120.63185 * 358.45196 * 15 13 12 17 17 C 1.53194 * 108.77694 * 126.41266 * 16 15 13 18 18 C 1.53039 * 109.30935 * 54.63405 * 17 16 15 19 19 C 1.52999 * 109.45782 * 178.61373 * 18 17 16 20 20 C 1.50700 * 109.47266 * 184.99925 * 19 18 17 21 21 N 1.34496 * 126.28585 * 90.00284 * 20 19 18 22 22 C 1.31132 * 105.61461 * 179.97438 * 21 20 19 23 23 O 1.33637 * 106.89944 * 0.02562 * 22 21 20 24 24 N 1.21303 * 109.81045 * 359.73783 * 23 22 21 25 25 C 1.53039 * 109.54240 * 298.63327 * 18 17 16 26 26 C 1.46933 * 120.62962 * 178.47356 * 15 13 12 27 27 C 1.40013 * 120.20949 * 0.27620 * 12 11 10 28 28 C 1.36325 * 120.10619 * 359.48438 * 27 12 11 29 29 H 0.97003 * 119.99687 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.05312 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.94559 * 179.97438 * 11 10 9 32 32 H 1.08995 * 109.58833 * 6.62484 * 16 15 13 33 33 H 1.08995 * 109.58825 * 246.19826 * 16 15 13 34 34 H 1.09002 * 109.49733 * 294.68714 * 17 16 15 35 35 H 1.09000 * 109.49658 * 174.58695 * 17 16 15 36 36 H 1.09003 * 109.46224 * 58.65901 * 18 17 16 37 37 H 1.09000 * 109.47468 * 304.99873 * 19 18 17 38 38 H 1.08998 * 109.47540 * 65.00439 * 19 18 17 39 39 H 1.08005 * 126.55234 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.50151 * 181.31906 * 25 18 17 41 41 H 1.08999 * 109.49734 * 301.41622 * 25 18 17 42 42 H 1.08997 * 109.58573 * 113.79520 * 26 15 13 43 43 H 1.09001 * 109.69909 * 353.44415 * 26 15 13 44 44 H 1.08001 * 119.94806 * 179.72280 * 27 12 11 45 45 H 1.07994 * 120.05585 * 180.25571 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4879 2.0465 -1.4001 5 1 1.4379 2.6527 0.7000 6 1 3.5381 1.4401 0.6999 7 6 2.0076 -1.2144 -0.0005 8 1 3.0527 -1.2347 0.2713 9 6 1.3478 -2.4098 -0.3565 10 6 1.8178 -3.6471 0.1263 11 6 1.1775 -4.7994 -0.2207 12 6 0.0540 -4.7547 -1.0551 13 6 -0.6356 -6.0055 -1.4284 14 8 -0.6758 -6.9347 -0.6451 15 7 -1.2206 -6.1175 -2.6374 16 6 -1.2098 -4.9918 -3.5815 17 6 -0.6394 -5.4751 -4.9186 18 6 -1.4358 -6.6905 -5.3988 19 6 -0.8911 -7.1549 -6.7510 20 6 -1.7511 -8.2727 -7.2820 21 7 -2.8361 -8.1389 -8.0653 22 6 -3.2666 -9.3582 -8.2833 23 8 -2.4407 -10.1838 -7.6336 24 7 -1.5778 -9.5432 -7.0711 25 6 -1.3039 -7.8243 -4.3794 26 6 -1.8818 -7.3676 -3.0362 27 6 -0.4137 -3.5279 -1.5416 28 6 0.2172 -2.3699 -1.1962 29 1 -0.4850 0.8401 0.0004 30 1 2.6846 -3.6827 0.7696 31 1 1.5373 -5.7484 0.1487 32 1 -0.5861 -4.1899 -3.1867 33 1 -2.2267 -4.6281 -3.7282 34 1 0.4064 -5.7537 -4.7886 35 1 -0.7147 -4.6762 -5.6563 36 1 -2.4858 -6.4179 -5.5049 37 1 -0.9038 -6.3216 -7.4536 38 1 0.1318 -7.5107 -6.6279 39 1 -4.1252 -9.6412 -8.8744 40 1 -1.8520 -8.6974 -4.7333 41 1 -0.2518 -8.0807 -4.2546 42 1 -2.9536 -7.1977 -3.1383 43 1 -1.7036 -8.1343 -2.2821 44 1 -1.2780 -3.4987 -2.1886 45 1 -0.1468 -1.4238 -1.5686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363596523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:18 Heat of formation + Delta-G solvation = 62.497261 kcal Electronic energy + Delta-G solvation = -28880.786458 eV Core-core repulsion = 24866.584198 eV Total energy + Delta-G solvation = -4014.202260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.90625 -39.97151 -37.95627 -37.02238 -36.11559 -34.15561 -33.81984 -32.34772 -31.46571 -29.87387 -29.51188 -28.73100 -26.01146 -24.69795 -24.21627 -23.27265 -22.42635 -21.47256 -20.92934 -20.30603 -18.81355 -18.33845 -18.11053 -17.53136 -16.49212 -16.13530 -15.77401 -15.36592 -14.80403 -14.78371 -14.56756 -14.23289 -13.87689 -13.82482 -13.35257 -13.08111 -12.93853 -12.78225 -12.51555 -12.37601 -12.10630 -12.04134 -11.89194 -11.68440 -11.44900 -11.35516 -11.29192 -11.18852 -11.10909 -10.96227 -10.67870 -10.52385 -10.33847 -10.19017 -10.01303 -9.48049 -9.37343 -8.88048 -8.23644 -7.65632 -7.52870 -7.01308 -4.59488 0.89672 1.95293 2.27252 2.71889 2.92514 2.95934 2.97110 2.98714 3.41745 3.51953 3.74610 3.78027 3.83654 4.46986 4.56658 4.65583 4.70020 4.92250 5.15746 5.16969 5.34202 5.39538 5.44665 5.49402 5.50459 5.56452 5.68044 5.71603 5.83590 5.89958 5.90210 6.02885 6.09787 6.14735 6.20632 6.27947 6.36595 6.76044 6.83346 6.94499 7.05665 7.12714 7.42741 7.60886 7.78772 7.84761 7.88697 8.05128 8.10675 8.39747 8.64047 8.74647 8.99628 9.91200 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.002276 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.892443 B =12300.712007 C =13140.516804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.446 4.446 8 H 0.084 0.916 9 C 0.127 3.873 10 C -0.235 4.235 11 C -0.027 4.027 12 C -0.276 4.276 13 C 0.576 3.424 14 O -0.571 6.571 15 N -0.616 5.616 16 C 0.077 3.923 17 C -0.127 4.127 18 C -0.081 4.081 19 C -0.028 4.028 20 C 0.178 3.822 21 N -0.485 5.485 22 C 0.154 3.846 23 O 0.074 5.926 24 N -0.379 5.379 25 C -0.127 4.127 26 C 0.115 3.885 27 C -0.082 4.082 28 C -0.175 4.175 29 H 0.286 0.714 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.134 0.866 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.261 0.739 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.109 0.891 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.100 -9.606 -16.668 20.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.474 4.474 8 H 0.102 0.898 9 C 0.123 3.877 10 C -0.254 4.254 11 C -0.046 4.046 12 C -0.280 4.280 13 C 0.371 3.629 14 O -0.452 6.452 15 N -0.350 5.350 16 C -0.045 4.045 17 C -0.166 4.166 18 C -0.100 4.100 19 C -0.067 4.067 20 C -0.095 4.095 21 N -0.218 5.218 22 C -0.087 4.087 23 O 0.016 5.984 24 N -0.086 5.086 25 C -0.165 4.165 26 C -0.008 4.008 27 C -0.101 4.101 28 C -0.194 4.194 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.151 0.849 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.277 0.723 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.107 0.893 44 H 0.127 0.873 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.671 -9.813 -15.777 19.426 hybrid contribution -0.183 0.582 -0.319 0.688 sum -5.855 -9.231 -16.096 19.457 Atomic orbital electron populations 1.69740 1.07846 1.29955 1.32283 1.26077 0.94809 1.01792 0.91961 0.86218 0.80558 0.79936 0.79592 1.18963 1.20067 1.18347 1.19814 0.98073 0.91069 1.38408 0.89815 1.17777 0.90474 0.92128 0.87282 1.20706 1.04504 0.92695 1.07501 1.20285 0.93474 0.97057 0.93831 1.18834 1.04478 0.91200 1.13537 1.18731 0.76413 0.87898 0.79838 1.90636 1.61664 1.42225 1.50630 1.47929 1.57367 1.13600 1.16071 1.22731 1.01980 0.91145 0.88669 1.21990 1.00261 0.96791 0.97527 1.21147 1.00558 0.96116 0.92219 1.20167 0.96674 0.92620 0.97221 1.25976 0.94602 0.92662 0.96253 1.71903 1.10590 1.23101 1.16202 1.30493 0.98087 0.83795 0.96285 1.85324 1.29186 1.36721 1.47173 1.74716 1.10126 1.07087 1.16666 1.21980 1.02281 0.97285 0.94950 1.21384 0.95579 0.87831 0.95997 1.20854 0.98754 0.92472 0.97989 1.21018 0.99861 0.96763 1.01762 0.90285 0.88416 0.88592 0.84917 0.92152 0.90997 0.90524 0.90599 0.88422 0.88940 0.72339 0.91708 0.91213 0.92614 0.89257 0.87306 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.51 10.95 55.56 0.61 -17.90 16 2 C 0.07 1.72 5.15 -17.31 -0.09 1.63 16 3 Si 0.91 17.19 29.59 -169.99 -5.03 12.16 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 7 C -0.45 -10.98 9.05 -37.75 -0.34 -11.32 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 9 C 0.13 3.17 5.57 -106.80 -0.59 2.58 16 10 C -0.23 -5.62 9.73 -39.27 -0.38 -6.00 16 11 C -0.03 -0.64 9.53 -39.61 -0.38 -1.02 16 12 C -0.28 -6.25 5.55 -104.73 -0.58 -6.83 16 13 C 0.58 12.45 7.44 -12.42 -0.09 12.36 16 14 O -0.57 -13.94 16.18 5.29 0.09 -13.85 16 15 N -0.62 -10.62 2.97 -173.96 -0.52 -11.14 16 16 C 0.08 1.11 4.87 -3.71 -0.02 1.09 16 17 C -0.13 -1.47 5.36 -26.61 -0.14 -1.61 16 18 C -0.08 -0.87 2.14 -90.58 -0.19 -1.07 16 19 C -0.03 -0.27 5.32 -27.88 -0.15 -0.42 16 20 C 0.18 1.88 6.68 -156.37 -1.04 0.84 16 21 N -0.48 -4.65 11.55 -13.72 -0.16 -4.81 16 22 C 0.15 0.93 13.40 51.98 0.70 1.62 16 23 O 0.07 0.64 11.31 18.12 0.20 0.84 16 24 N -0.38 -4.21 11.44 30.88 0.35 -3.85 16 25 C -0.13 -1.59 5.19 -26.61 -0.14 -1.73 16 26 C 0.12 1.72 6.42 -3.71 -0.02 1.70 16 27 C -0.08 -1.78 7.36 -39.61 -0.29 -2.07 16 28 C -0.17 -4.18 8.63 -39.27 -0.34 -4.52 16 29 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 30 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 31 H 0.10 2.16 7.95 -52.49 -0.42 1.74 16 32 H 0.13 2.16 3.55 -53.94 -0.19 1.97 16 33 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.26 0.01 8.06 -52.48 -0.42 -0.41 16 40 H 0.06 0.80 6.78 -51.93 -0.35 0.45 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 1.49 7.02 -51.93 -0.36 1.12 16 44 H 0.11 2.05 5.29 -52.49 -0.28 1.77 16 45 H 0.12 2.92 6.18 -52.49 -0.32 2.60 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -31.06 366.90 -8.73 -39.79 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.70 Total: 7.99 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -4.10 Total: -14.75 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.29 Total: -37.70 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.29 Total: -13.01 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.06 -8.73 -39.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363596523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.283 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds