Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86803 * 120.00053 * 2 1 4 4 H 1.48504 * 109.46987 * 270.00309 * 3 2 1 5 5 H 1.48497 * 109.47058 * 29.99822 * 3 2 1 6 6 H 1.48501 * 109.47117 * 150.00525 * 3 2 1 7 7 C 1.40227 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00045 * 196.89991 * 7 2 1 9 9 C 1.41107 * 119.99744 * 16.90833 * 7 2 1 10 10 C 1.40888 * 120.10357 * 205.46179 * 9 7 2 11 11 C 1.36317 * 119.89592 * 180.02562 * 10 9 7 12 12 C 1.40015 * 120.10462 * 359.97438 * 11 10 9 13 13 C 1.47634 * 119.89372 * 179.97438 * 12 11 10 14 14 O 1.21588 * 120.00246 * 32.81284 * 13 12 11 15 15 N 1.34783 * 119.99836 * 212.81225 * 13 12 11 16 16 C 1.46920 * 120.63185 * 358.45196 * 15 13 12 17 17 C 1.53194 * 108.77694 * 126.41266 * 16 15 13 18 18 C 1.53039 * 109.30935 * 54.63405 * 17 16 15 19 19 C 1.52999 * 109.45782 * 178.61373 * 18 17 16 20 20 C 1.50700 * 109.47266 * 184.99925 * 19 18 17 21 21 N 1.34496 * 126.28585 * 90.00284 * 20 19 18 22 22 C 1.31132 * 105.61461 * 179.97438 * 21 20 19 23 23 O 1.33637 * 106.89944 * 0.02562 * 22 21 20 24 24 N 1.21303 * 109.81045 * 359.73783 * 23 22 21 25 25 C 1.53039 * 109.54240 * 298.63327 * 18 17 16 26 26 C 1.46933 * 120.62962 * 178.47356 * 15 13 12 27 27 C 1.40013 * 120.20949 * 0.27620 * 12 11 10 28 28 C 1.36325 * 120.10619 * 359.48438 * 27 12 11 29 29 H 0.97003 * 119.99687 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.05312 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.94559 * 179.97438 * 11 10 9 32 32 H 1.08995 * 109.58833 * 6.62484 * 16 15 13 33 33 H 1.08995 * 109.58825 * 246.19826 * 16 15 13 34 34 H 1.09002 * 109.49733 * 294.68714 * 17 16 15 35 35 H 1.09000 * 109.49658 * 174.58695 * 17 16 15 36 36 H 1.09003 * 109.46224 * 58.65901 * 18 17 16 37 37 H 1.09000 * 109.47468 * 304.99873 * 19 18 17 38 38 H 1.08998 * 109.47540 * 65.00439 * 19 18 17 39 39 H 1.08005 * 126.55234 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.50151 * 181.31906 * 25 18 17 41 41 H 1.08999 * 109.49734 * 301.41622 * 25 18 17 42 42 H 1.08997 * 109.58573 * 113.79520 * 26 15 13 43 43 H 1.09001 * 109.69909 * 353.44415 * 26 15 13 44 44 H 1.08001 * 119.94806 * 179.72280 * 27 12 11 45 45 H 1.07994 * 120.05585 * 180.25571 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4879 2.0465 -1.4001 5 1 1.4379 2.6527 0.7000 6 1 3.5381 1.4401 0.6999 7 6 2.0076 -1.2144 -0.0005 8 1 3.0527 -1.2347 0.2713 9 6 1.3478 -2.4098 -0.3565 10 6 1.8178 -3.6471 0.1263 11 6 1.1775 -4.7994 -0.2207 12 6 0.0540 -4.7547 -1.0551 13 6 -0.6356 -6.0055 -1.4284 14 8 -0.6758 -6.9347 -0.6451 15 7 -1.2206 -6.1175 -2.6374 16 6 -1.2098 -4.9918 -3.5815 17 6 -0.6394 -5.4751 -4.9186 18 6 -1.4358 -6.6905 -5.3988 19 6 -0.8911 -7.1549 -6.7510 20 6 -1.7511 -8.2727 -7.2820 21 7 -2.8361 -8.1389 -8.0653 22 6 -3.2666 -9.3582 -8.2833 23 8 -2.4407 -10.1838 -7.6336 24 7 -1.5778 -9.5432 -7.0711 25 6 -1.3039 -7.8243 -4.3794 26 6 -1.8818 -7.3676 -3.0362 27 6 -0.4137 -3.5279 -1.5416 28 6 0.2172 -2.3699 -1.1962 29 1 -0.4850 0.8401 0.0004 30 1 2.6846 -3.6827 0.7696 31 1 1.5373 -5.7484 0.1487 32 1 -0.5861 -4.1899 -3.1867 33 1 -2.2267 -4.6281 -3.7282 34 1 0.4064 -5.7537 -4.7886 35 1 -0.7147 -4.6762 -5.6563 36 1 -2.4858 -6.4179 -5.5049 37 1 -0.9038 -6.3216 -7.4536 38 1 0.1318 -7.5107 -6.6279 39 1 -4.1252 -9.6412 -8.8744 40 1 -1.8520 -8.6974 -4.7333 41 1 -0.2518 -8.0807 -4.2546 42 1 -2.9536 -7.1977 -3.1383 43 1 -1.7036 -8.1343 -2.2821 44 1 -1.2780 -3.4987 -2.1886 45 1 -0.1468 -1.4238 -1.5686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363596523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = 43.723479 kcal Electronic energy + Delta-G solvation = -28881.600551 eV Core-core repulsion = 24866.584198 eV Total energy + Delta-G solvation = -4015.016352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.56013 -41.44003 -39.35957 -38.62210 -36.98442 -35.74337 -35.07074 -33.20935 -32.79151 -31.48973 -31.24147 -29.78103 -27.71068 -25.69584 -25.05312 -24.49056 -23.50901 -22.91112 -22.49948 -21.51903 -20.22443 -19.34517 -19.03568 -18.71906 -18.05027 -17.41356 -16.97577 -16.73246 -16.26090 -15.96910 -15.50785 -15.44570 -15.30796 -15.13865 -14.76871 -14.49191 -14.31614 -14.13742 -13.86706 -13.62895 -13.38156 -13.29164 -13.07572 -12.90576 -12.82693 -12.75370 -12.55359 -12.40043 -12.21687 -12.05761 -12.00153 -11.76866 -11.62344 -11.46657 -11.21168 -11.12655 -10.92999 -10.56960 -9.69458 -9.46374 -9.33469 -8.75921 -6.45972 0.34411 0.49861 1.11612 1.30551 1.40608 1.44716 1.54556 2.00510 2.16286 2.18766 2.27644 2.71773 2.83427 3.22634 3.62971 3.64374 3.68383 3.82176 3.97660 4.11206 4.26184 4.29592 4.30547 4.39279 4.43162 4.49684 4.56065 4.73603 4.77697 4.78769 4.82949 4.91933 4.94566 4.97466 5.02500 5.05039 5.11480 5.14727 5.17470 5.30453 5.38511 5.58633 5.65552 5.81649 5.96907 6.00154 6.23873 6.50820 6.55830 6.79990 6.90137 7.29231 7.33334 8.19601 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.002276 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.892443 B =12300.712007 C =13140.516804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.038 3.962 3 Si 0.987 3.013 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.476 4.476 8 H 0.083 0.917 9 C 0.100 3.900 10 C -0.249 4.249 11 C -0.039 4.039 12 C -0.284 4.284 13 C 0.571 3.429 14 O -0.608 6.608 15 N -0.607 5.607 16 C 0.070 3.930 17 C -0.120 4.120 18 C -0.070 4.070 19 C -0.024 4.024 20 C 0.165 3.835 21 N -0.516 5.516 22 C 0.180 3.820 23 O 0.069 5.931 24 N -0.409 5.409 25 C -0.115 4.115 26 C 0.113 3.887 27 C -0.067 4.067 28 C -0.192 4.192 29 H 0.296 0.704 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.314 0.686 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.140 0.860 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.500 -8.877 -19.213 22.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.180 4.180 3 Si 0.807 3.193 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.503 4.503 8 H 0.101 0.899 9 C 0.097 3.903 10 C -0.269 4.269 11 C -0.058 4.058 12 C -0.289 4.289 13 C 0.365 3.635 14 O -0.492 6.492 15 N -0.339 5.339 16 C -0.051 4.051 17 C -0.158 4.158 18 C -0.089 4.089 19 C -0.063 4.063 20 C -0.107 4.107 21 N -0.249 5.249 22 C -0.060 4.060 23 O 0.012 5.988 24 N -0.118 5.118 25 C -0.153 4.153 26 C -0.009 4.009 27 C -0.085 4.085 28 C -0.211 4.211 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.108 0.892 39 H 0.329 0.671 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.158 0.842 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.097 -9.092 -18.373 21.693 hybrid contribution 0.131 0.230 0.391 0.472 sum -6.966 -8.862 -17.982 21.223 Atomic orbital electron populations 1.69764 1.09174 1.31501 1.32159 1.26894 0.95536 1.04727 0.90865 0.85118 0.78977 0.75309 0.79891 1.18083 1.19149 1.18325 1.20062 0.98352 0.92079 1.39830 0.89867 1.18126 0.91386 0.92736 0.88019 1.20827 1.05085 0.92821 1.08136 1.20426 0.94091 0.96954 0.94302 1.19079 1.04240 0.92291 1.13249 1.18628 0.76831 0.87044 0.80999 1.90610 1.63357 1.43068 1.52203 1.47961 1.55776 1.15149 1.14989 1.22869 1.03149 0.89791 0.89251 1.21939 0.99453 0.98007 0.96427 1.21023 1.00815 0.94828 0.92268 1.20109 0.96405 0.93122 0.96642 1.26114 0.95163 0.92693 0.96715 1.71900 1.10932 1.24850 1.17187 1.31633 0.97675 0.82446 0.94231 1.85282 1.29309 1.36826 1.47409 1.74717 1.11526 1.07537 1.18030 1.21857 1.01177 0.98248 0.94043 1.21538 0.96587 0.86231 0.96585 1.21099 0.99008 0.91261 0.97170 1.21040 1.00347 0.97259 1.02476 0.89273 0.87941 0.88505 0.86775 0.89767 0.92040 0.87605 0.89962 0.86833 0.89163 0.67108 0.91198 0.92639 0.90656 0.91463 0.84248 0.86580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.34 10.95 21.87 0.24 -38.10 16 2 C 0.04 1.77 5.15 85.35 0.44 2.21 16 3 Si 0.99 34.68 29.59 68.60 2.03 36.71 16 4 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 5 H -0.27 -8.95 7.11 99.48 0.71 -8.24 16 6 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 7 C -0.48 -23.92 9.05 23.46 0.21 -23.71 16 8 H 0.08 4.03 7.90 -2.91 -0.02 4.01 16 9 C 0.10 5.18 5.57 -21.28 -0.12 5.07 16 10 C -0.25 -12.41 9.73 22.47 0.22 -12.19 16 11 C -0.04 -1.87 9.53 22.25 0.21 -1.66 16 12 C -0.28 -13.10 5.55 -19.94 -0.11 -13.21 16 13 C 0.57 24.99 7.44 86.72 0.65 25.63 16 14 O -0.61 -30.53 16.18 -3.99 -0.06 -30.59 16 15 N -0.61 -20.51 2.97 -822.54 -2.44 -22.96 16 16 C 0.07 1.90 4.87 86.36 0.42 2.32 16 17 C -0.12 -2.49 5.36 30.67 0.16 -2.33 16 18 C -0.07 -1.35 2.14 -10.77 -0.02 -1.37 16 19 C -0.02 -0.42 5.32 29.85 0.16 -0.26 16 20 C 0.17 3.20 6.68 138.46 0.92 4.12 16 21 N -0.52 -8.53 11.55 -315.36 -3.64 -12.17 16 22 C 0.18 1.58 13.40 130.51 1.75 3.32 16 23 O 0.07 1.05 11.31 74.89 0.85 1.89 16 24 N -0.41 -8.54 11.44 -60.38 -0.69 -9.23 16 25 C -0.11 -2.76 5.19 30.67 0.16 -2.60 16 26 C 0.11 3.29 6.42 86.36 0.55 3.85 16 27 C -0.07 -2.91 7.36 22.25 0.16 -2.75 16 28 C -0.19 -9.32 8.63 22.47 0.19 -9.12 16 29 H 0.30 12.58 8.29 -92.71 -0.77 11.82 16 30 H 0.10 4.82 8.06 -2.91 -0.02 4.79 16 31 H 0.10 4.57 7.95 -2.91 -0.02 4.54 16 32 H 0.11 3.56 3.55 -4.28 -0.02 3.55 16 33 H 0.08 1.93 8.13 -2.39 -0.02 1.91 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 39 H 0.31 -1.49 8.06 -2.91 -0.02 -1.51 16 40 H 0.07 1.64 6.78 -2.39 -0.02 1.63 16 41 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 43 H 0.07 2.28 7.02 -2.39 -0.02 2.26 16 44 H 0.14 5.07 5.29 -2.91 -0.02 5.06 16 45 H 0.12 5.68 6.18 -2.91 -0.02 5.67 16 Total: -1.00 -70.06 366.90 3.26 -66.80 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 1.02 Total: 30.33 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 5.96 Total: -22.68 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -6.54 Total: -82.46 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: 0.78 Total: -28.70 kcal Atomic # 14 Polarization: 34.68 SS G_CDS: 2.03 Total: 36.71 kcal Total: -70.06 3.26 -66.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363596523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.519 kcal (2) G-P(sol) polarization free energy of solvation -70.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds