Wall clock time and date at job start Sat Apr 11 2020 06:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00205 * 2 1 4 4 H 1.48494 * 109.46839 * 264.63454 * 3 2 1 5 5 H 1.48498 * 109.46859 * 24.63311 * 3 2 1 6 6 H 1.48494 * 109.47218 * 144.63233 * 3 2 1 7 7 C 1.37884 * 119.99610 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00282 * 4.85802 * 7 2 1 9 9 C 1.50703 * 119.99343 * 184.85504 * 7 2 1 10 10 H 1.08997 * 109.47319 * 34.73379 * 9 7 2 11 11 C 1.53004 * 109.46578 * 154.72367 * 9 7 2 12 12 C 1.50697 * 109.47398 * 294.99753 * 11 9 7 13 13 O 1.21284 * 120.00141 * 0.02562 * 12 11 9 14 14 N 1.34775 * 120.00070 * 179.97438 * 12 11 9 15 15 C 1.47023 * 125.64946 * 0.03241 * 14 12 11 16 16 C 1.54324 * 107.40350 * 178.97797 * 15 14 12 17 17 C 1.55162 * 102.94042 * 337.72553 * 16 15 14 18 18 H 1.08994 * 111.00418 * 277.42855 * 17 16 15 19 19 C 1.50701 * 111.00335 * 153.61364 * 17 16 15 20 20 N 1.34493 * 126.28818 * 121.16788 * 19 17 16 21 21 C 1.31131 * 105.61615 * 179.90573 * 20 19 17 22 22 O 1.33641 * 106.89669 * 0.35439 * 21 20 19 23 23 N 1.21302 * 109.81025 * 359.77154 * 22 21 20 24 24 C 1.47742 * 125.81830 * 179.97438 * 14 12 11 25 25 C 1.50692 * 109.47365 * 274.72031 * 9 7 2 26 26 C 1.38236 * 120.00478 * 295.28387 * 25 9 7 27 27 C 1.38232 * 120.00290 * 179.76529 * 26 25 9 28 28 C 1.38234 * 119.99991 * 0.50001 * 27 26 25 29 29 C 1.38237 * 119.99845 * 359.75388 * 28 27 26 30 30 C 1.38234 * 119.99938 * 115.54916 * 25 9 7 31 31 H 0.97000 * 119.99812 * 0.02562 * 1 2 3 32 32 H 1.09007 * 109.46958 * 174.99611 * 11 9 7 33 33 H 1.09004 * 109.47083 * 55.00084 * 11 9 7 34 34 H 1.08997 * 109.88254 * 59.48151 * 15 14 12 35 35 H 1.08996 * 109.87676 * 298.46985 * 15 14 12 36 36 H 1.08994 * 110.72162 * 96.08727 * 16 15 14 37 37 H 1.08994 * 110.72157 * 219.36818 * 16 15 14 38 38 H 1.07994 * 126.54856 * 180.12145 * 21 20 19 39 39 H 1.08995 * 110.28758 * 85.26208 * 24 14 12 40 40 H 1.09000 * 110.47449 * 323.03531 * 24 14 12 41 41 H 1.08004 * 119.99464 * 359.97438 * 26 25 9 42 42 H 1.08002 * 120.00300 * 180.23589 * 27 26 25 43 43 H 1.07996 * 120.00012 * 179.72555 * 28 27 26 44 44 H 1.08000 * 119.99824 * 179.97438 * 29 28 27 45 45 H 1.08005 * 120.00132 * 0.02562 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6100 1.9808 -1.3939 5 1 1.3945 2.6827 0.5836 6 1 3.4854 1.4755 0.8104 7 6 2.0045 -1.1942 0.0005 8 1 1.4674 -2.1277 -0.0782 9 6 3.5075 -1.1964 0.1110 10 1 3.8256 -0.3777 0.7564 11 6 3.9729 -2.5262 0.7075 12 6 3.4690 -2.6458 2.1227 13 8 2.8027 -1.7553 2.6065 14 7 3.7578 -3.7428 2.8505 15 6 4.5512 -4.8919 2.3903 16 6 4.6406 -5.8905 3.5636 17 6 4.3734 -4.9957 4.8026 18 1 5.2820 -4.4821 5.1169 19 6 3.7924 -5.8016 5.9358 20 7 4.3203 -5.9427 7.1647 21 6 3.4898 -6.7187 7.8187 22 8 2.5003 -7.0271 6.9750 23 7 2.6923 -6.4925 5.9032 24 6 3.3328 -3.9931 4.2431 25 6 4.1121 -1.0210 -1.2581 26 6 3.9294 -1.9928 -2.2241 27 6 4.4799 -1.8297 -3.4815 28 6 5.2219 -0.6995 -3.7698 29 6 5.4091 0.2698 -2.8022 30 6 4.8541 0.1091 -1.5464 31 1 -0.4850 0.8401 -0.0004 32 1 5.0623 -2.5640 0.7053 33 1 3.5797 -3.3495 0.1110 34 1 5.5508 -4.5626 2.1069 35 1 4.0609 -5.3635 1.5387 36 1 3.8758 -6.6617 3.4727 37 1 5.6342 -6.3355 3.6164 38 1 3.5887 -7.0488 8.8421 39 1 2.3351 -4.4317 4.2607 40 1 3.3497 -3.0678 4.8191 41 1 3.3536 -2.8780 -1.9974 42 1 4.3340 -2.5871 -4.2374 43 1 5.6558 -0.5742 -4.7508 44 1 5.9891 1.1526 -3.0274 45 1 5.0008 0.8662 -0.7903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363965304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:26 Heat of formation + Delta-G solvation = 71.393354 kcal Electronic energy + Delta-G solvation = -29043.312048 eV Core-core repulsion = 25029.495552 eV Total energy + Delta-G solvation = -4013.816496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.91692 -39.79089 -38.65703 -37.44033 -35.88766 -34.10895 -33.09176 -31.70744 -31.12228 -30.24838 -29.44403 -28.71208 -26.22294 -24.51830 -24.38041 -23.01620 -22.41305 -21.86423 -20.94606 -19.83936 -18.68144 -18.30579 -18.14161 -17.04090 -16.70650 -16.33081 -15.91688 -15.80563 -14.93449 -14.61569 -14.27961 -14.12039 -13.81940 -13.72496 -13.51462 -13.04424 -12.82566 -12.76722 -12.57711 -12.50041 -12.41070 -12.22412 -11.86134 -11.76947 -11.70060 -11.48423 -11.43568 -11.14620 -10.97520 -10.71002 -10.58151 -10.36321 -10.25142 -9.87585 -9.58672 -9.18906 -9.01782 -8.46386 -8.30666 -8.22121 -7.80674 -5.97519 -3.93789 0.89979 1.91027 2.06891 2.13265 2.71579 3.08911 3.37437 3.41813 3.45037 3.46443 3.57619 3.80664 4.29587 4.46494 4.50208 4.55951 4.59872 4.93986 5.09345 5.19482 5.23292 5.36619 5.45463 5.50201 5.50724 5.52848 5.62286 5.67007 5.67130 5.80219 5.83138 5.93191 5.96362 5.99542 6.06469 6.20675 6.31192 6.45421 6.60826 6.69484 6.81203 7.03880 7.12540 7.24058 7.58546 7.70460 7.80848 7.88118 7.93003 8.53377 8.91214 9.01824 9.65429 11.15689 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.002784 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.521767 B =10055.577319 C =11106.189498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.083 3.917 3 Si 0.868 3.132 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.262 1.262 7 C -0.483 4.483 8 H 0.071 0.929 9 C 0.048 3.952 10 H 0.054 0.946 11 C -0.108 4.108 12 C 0.532 3.468 13 O -0.493 6.493 14 N -0.634 5.634 15 C 0.106 3.894 16 C -0.120 4.120 17 C -0.017 4.017 18 H 0.116 0.884 19 C 0.183 3.817 20 N -0.484 5.484 21 C 0.156 3.844 22 O 0.080 5.920 23 N -0.372 5.372 24 C 0.121 3.879 25 C -0.038 4.038 26 C -0.107 4.107 27 C -0.124 4.124 28 C -0.151 4.151 29 C -0.122 4.122 30 C -0.142 4.142 31 H 0.262 0.738 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.263 0.737 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.904 -14.579 9.336 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.120 4.120 3 Si 0.696 3.304 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.188 1.188 7 C -0.520 4.520 8 H 0.090 0.910 9 C 0.028 3.972 10 H 0.073 0.927 11 C -0.148 4.148 12 C 0.321 3.679 13 O -0.364 6.364 14 N -0.373 5.373 15 C -0.018 4.018 16 C -0.159 4.159 17 C -0.037 4.037 18 H 0.134 0.866 19 C -0.090 4.090 20 N -0.216 5.216 21 C -0.085 4.085 22 O 0.020 5.980 23 N -0.077 5.077 24 C -0.003 4.003 25 C -0.039 4.039 26 C -0.125 4.125 27 C -0.142 4.142 28 C -0.169 4.169 29 C -0.140 4.140 30 C -0.160 4.160 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.278 0.722 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.136 0.864 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.171 -13.642 8.756 20.271 hybrid contribution 0.259 0.770 0.330 0.877 sum 12.430 -12.871 9.086 20.069 Atomic orbital electron populations 1.69887 1.06283 1.26781 1.50551 1.24874 0.94521 0.98759 0.93803 0.87049 0.80387 0.84225 0.78701 1.19751 1.21935 1.18752 1.20610 0.87198 0.94492 1.49688 0.91047 1.18282 0.97176 0.93286 0.88421 0.92746 1.21595 0.99543 1.01915 0.91723 1.20611 0.79779 0.79652 0.87850 1.90772 1.36036 1.38275 1.71330 1.48712 1.55589 1.19621 1.13418 1.21919 0.96304 0.86659 0.96903 1.22739 1.03364 0.97515 0.92252 1.20733 0.99492 0.94590 0.88913 0.86604 1.25481 0.90212 0.99218 0.94055 1.71887 1.28543 1.17332 1.03883 1.30496 0.83562 0.93959 1.00444 1.85346 1.42938 1.53546 1.16170 1.74678 1.18727 1.12122 1.02198 1.22075 0.96357 0.98199 0.83680 1.20761 0.91373 0.92747 0.98986 1.20928 0.99133 0.99732 0.92743 1.21043 0.98726 0.97684 0.96752 1.20856 1.01869 0.95458 0.98695 1.20963 1.00550 0.98590 0.93880 1.21085 0.99473 0.98530 0.96889 0.92816 0.91144 0.89684 0.91090 0.90947 0.89982 0.89420 0.72182 0.91189 0.89989 0.86372 0.87124 0.87346 0.87305 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.52 13.96 55.43 0.77 -27.74 16 2 C 0.08 2.47 5.47 -17.82 -0.10 2.38 16 3 Si 0.87 22.84 24.76 -169.99 -4.21 18.63 16 4 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 6 H -0.26 -6.60 5.95 56.52 0.34 -6.27 16 7 C -0.48 -13.53 7.19 -34.44 -0.25 -13.78 16 8 H 0.07 2.17 8.05 -52.49 -0.42 1.75 16 9 C 0.05 1.11 1.24 -92.92 -0.12 0.99 16 10 H 0.05 1.36 5.26 -51.93 -0.27 1.09 16 11 C -0.11 -2.03 4.03 -27.88 -0.11 -2.15 16 12 C 0.53 10.80 7.60 -10.99 -0.08 10.71 16 13 O -0.49 -12.56 15.26 5.55 0.08 -12.48 16 14 N -0.63 -9.98 3.34 -170.24 -0.57 -10.55 16 15 C 0.11 1.18 6.48 -3.06 -0.02 1.16 16 16 C -0.12 -1.12 6.41 -24.89 -0.16 -1.28 16 17 C -0.02 -0.18 3.58 -89.59 -0.32 -0.50 16 18 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 19 C 0.18 2.07 6.88 -156.37 -1.08 0.99 16 20 N -0.48 -4.80 11.55 -13.72 -0.16 -4.96 16 21 C 0.16 0.96 13.40 51.98 0.70 1.66 16 22 O 0.08 0.71 11.31 18.11 0.20 0.92 16 23 N -0.37 -4.37 11.87 30.88 0.37 -4.01 16 24 C 0.12 1.76 6.38 -2.33 -0.01 1.74 16 25 C -0.04 -0.80 4.30 -104.63 -0.45 -1.25 16 26 C -0.11 -2.06 8.94 -39.58 -0.35 -2.42 16 27 C -0.12 -2.09 10.05 -39.59 -0.40 -2.49 16 28 C -0.15 -2.47 10.05 -39.58 -0.40 -2.87 16 29 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16 30 C -0.14 -2.86 8.15 -39.58 -0.32 -3.18 16 31 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.50 7.33 -51.93 -0.38 1.12 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.81 7.97 -51.93 -0.41 0.40 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.26 0.01 8.06 -52.49 -0.42 -0.42 16 39 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 40 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 41 H 0.12 2.18 7.37 -52.48 -0.39 1.79 16 42 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 44 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.11 2.20 6.77 -52.48 -0.36 1.85 16 LS Contribution 372.31 15.07 5.61 5.61 Total: -1.00 -37.50 372.31 -7.83 -45.33 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.06 Total: 2.08 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -3.87 Total: -12.83 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.41 Total: -47.26 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.29 Total: -11.56 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.21 Total: 18.63 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.50 -7.83 -45.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363965304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.719 kcal (2) G-P(sol) polarization free energy of solvation -37.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds