Wall clock time and date at job start Sat Apr 11 2020 06:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00205 * 2 1 4 4 H 1.48494 * 109.46839 * 264.63454 * 3 2 1 5 5 H 1.48498 * 109.46859 * 24.63311 * 3 2 1 6 6 H 1.48494 * 109.47218 * 144.63233 * 3 2 1 7 7 C 1.37884 * 119.99610 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00282 * 4.85802 * 7 2 1 9 9 C 1.50703 * 119.99343 * 184.85504 * 7 2 1 10 10 H 1.08997 * 109.47319 * 34.73379 * 9 7 2 11 11 C 1.53004 * 109.46578 * 154.72367 * 9 7 2 12 12 C 1.50697 * 109.47398 * 294.99753 * 11 9 7 13 13 O 1.21284 * 120.00141 * 0.02562 * 12 11 9 14 14 N 1.34775 * 120.00070 * 179.97438 * 12 11 9 15 15 C 1.47023 * 125.64946 * 0.03241 * 14 12 11 16 16 C 1.54324 * 107.40350 * 178.97797 * 15 14 12 17 17 C 1.55162 * 102.94042 * 337.72553 * 16 15 14 18 18 H 1.08994 * 111.00418 * 277.42855 * 17 16 15 19 19 C 1.50701 * 111.00335 * 153.61364 * 17 16 15 20 20 N 1.34493 * 126.28818 * 121.16788 * 19 17 16 21 21 C 1.31131 * 105.61615 * 179.90573 * 20 19 17 22 22 O 1.33641 * 106.89669 * 0.35439 * 21 20 19 23 23 N 1.21302 * 109.81025 * 359.77154 * 22 21 20 24 24 C 1.47742 * 125.81830 * 179.97438 * 14 12 11 25 25 C 1.50692 * 109.47365 * 274.72031 * 9 7 2 26 26 C 1.38236 * 120.00478 * 295.28387 * 25 9 7 27 27 C 1.38232 * 120.00290 * 179.76529 * 26 25 9 28 28 C 1.38234 * 119.99991 * 0.50001 * 27 26 25 29 29 C 1.38237 * 119.99845 * 359.75388 * 28 27 26 30 30 C 1.38234 * 119.99938 * 115.54916 * 25 9 7 31 31 H 0.97000 * 119.99812 * 0.02562 * 1 2 3 32 32 H 1.09007 * 109.46958 * 174.99611 * 11 9 7 33 33 H 1.09004 * 109.47083 * 55.00084 * 11 9 7 34 34 H 1.08997 * 109.88254 * 59.48151 * 15 14 12 35 35 H 1.08996 * 109.87676 * 298.46985 * 15 14 12 36 36 H 1.08994 * 110.72162 * 96.08727 * 16 15 14 37 37 H 1.08994 * 110.72157 * 219.36818 * 16 15 14 38 38 H 1.07994 * 126.54856 * 180.12145 * 21 20 19 39 39 H 1.08995 * 110.28758 * 85.26208 * 24 14 12 40 40 H 1.09000 * 110.47449 * 323.03531 * 24 14 12 41 41 H 1.08004 * 119.99464 * 359.97438 * 26 25 9 42 42 H 1.08002 * 120.00300 * 180.23589 * 27 26 25 43 43 H 1.07996 * 120.00012 * 179.72555 * 28 27 26 44 44 H 1.08000 * 119.99824 * 179.97438 * 29 28 27 45 45 H 1.08005 * 120.00132 * 0.02562 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6100 1.9808 -1.3939 5 1 1.3945 2.6827 0.5836 6 1 3.4854 1.4755 0.8104 7 6 2.0045 -1.1942 0.0005 8 1 1.4674 -2.1277 -0.0782 9 6 3.5075 -1.1964 0.1110 10 1 3.8256 -0.3777 0.7564 11 6 3.9729 -2.5262 0.7075 12 6 3.4690 -2.6458 2.1227 13 8 2.8027 -1.7553 2.6065 14 7 3.7578 -3.7428 2.8505 15 6 4.5512 -4.8919 2.3903 16 6 4.6406 -5.8905 3.5636 17 6 4.3734 -4.9957 4.8026 18 1 5.2820 -4.4821 5.1169 19 6 3.7924 -5.8016 5.9358 20 7 4.3203 -5.9427 7.1647 21 6 3.4898 -6.7187 7.8187 22 8 2.5003 -7.0271 6.9750 23 7 2.6923 -6.4925 5.9032 24 6 3.3328 -3.9931 4.2431 25 6 4.1121 -1.0210 -1.2581 26 6 3.9294 -1.9928 -2.2241 27 6 4.4799 -1.8297 -3.4815 28 6 5.2219 -0.6995 -3.7698 29 6 5.4091 0.2698 -2.8022 30 6 4.8541 0.1091 -1.5464 31 1 -0.4850 0.8401 -0.0004 32 1 5.0623 -2.5640 0.7053 33 1 3.5797 -3.3495 0.1110 34 1 5.5508 -4.5626 2.1069 35 1 4.0609 -5.3635 1.5387 36 1 3.8758 -6.6617 3.4727 37 1 5.6342 -6.3355 3.6164 38 1 3.5887 -7.0488 8.8421 39 1 2.3351 -4.4317 4.2607 40 1 3.3497 -3.0678 4.8191 41 1 3.3536 -2.8780 -1.9974 42 1 4.3340 -2.5871 -4.2374 43 1 5.6558 -0.5742 -4.7508 44 1 5.9891 1.1526 -3.0274 45 1 5.0008 0.8662 -0.7903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363965304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:26 Heat of formation + Delta-G solvation = 43.874437 kcal Electronic energy + Delta-G solvation = -29044.505358 eV Core-core repulsion = 25029.495552 eV Total energy + Delta-G solvation = -4015.009806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.65010 -41.16067 -40.05891 -38.76571 -36.71786 -35.89393 -34.06306 -33.70661 -32.21627 -31.64340 -30.63642 -29.96930 -28.01320 -25.72835 -25.14919 -24.23876 -23.76305 -23.26426 -21.82259 -21.35561 -20.05978 -19.09472 -19.04277 -18.97716 -18.18198 -17.42104 -17.18687 -16.66417 -16.56252 -16.27098 -15.69535 -15.50378 -15.34040 -14.80883 -14.71568 -14.56587 -14.35544 -14.02644 -13.88587 -13.79266 -13.57217 -13.40695 -13.31484 -13.26151 -12.92909 -12.65904 -12.64189 -12.30902 -12.18310 -12.14020 -11.91307 -11.85254 -11.80834 -11.48601 -11.09900 -11.04174 -10.81984 -10.57808 -9.65352 -9.63883 -9.32131 -8.25856 -6.22403 0.27744 0.65184 0.70959 1.18554 1.27042 1.31144 1.36503 1.80657 1.91111 2.24020 2.35548 2.73573 3.04968 3.08454 3.17468 3.34857 3.56530 3.85416 3.95565 4.07213 4.14308 4.21141 4.27352 4.28818 4.35119 4.39677 4.47279 4.53256 4.56939 4.71128 4.72913 4.78615 4.82903 4.83990 4.88981 5.00362 5.03790 5.11170 5.19933 5.32077 5.37364 5.38935 5.66756 5.74819 5.79860 5.99137 6.28994 6.32609 6.54889 6.76244 7.22108 7.36202 7.39748 8.91676 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.002784 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.521767 B =10055.577319 C =11106.189498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.018 3.982 3 Si 0.922 3.078 4 H -0.257 1.257 5 H -0.301 1.301 6 H -0.251 1.251 7 C -0.463 4.463 8 H 0.031 0.969 9 C 0.051 3.949 10 H 0.032 0.968 11 C -0.100 4.100 12 C 0.525 3.475 13 O -0.563 6.563 14 N -0.629 5.629 15 C 0.097 3.903 16 C -0.106 4.106 17 C -0.005 4.005 18 H 0.128 0.872 19 C 0.170 3.830 20 N -0.514 5.514 21 C 0.185 3.815 22 O 0.077 5.923 23 N -0.403 5.403 24 C 0.118 3.882 25 C -0.063 4.063 26 C -0.121 4.121 27 C -0.120 4.120 28 C -0.140 4.140 29 C -0.123 4.123 30 C -0.161 4.161 31 H 0.259 0.741 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.319 0.681 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.116 0.884 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.139 0.861 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.744 -16.244 8.372 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.178 4.178 3 Si 0.749 3.251 4 H -0.182 1.182 5 H -0.228 1.228 6 H -0.175 1.175 7 C -0.501 4.501 8 H 0.050 0.950 9 C 0.031 3.969 10 H 0.050 0.950 11 C -0.140 4.140 12 C 0.315 3.685 13 O -0.440 6.440 14 N -0.366 5.366 15 C -0.025 4.025 16 C -0.145 4.145 17 C -0.026 4.026 18 H 0.146 0.854 19 C -0.103 4.103 20 N -0.246 5.246 21 C -0.054 4.054 22 O 0.018 5.982 23 N -0.110 5.110 24 C -0.006 4.006 25 C -0.063 4.063 26 C -0.139 4.139 27 C -0.138 4.138 28 C -0.158 4.158 29 C -0.141 4.141 30 C -0.180 4.180 31 H 0.068 0.932 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.140 0.860 38 H 0.334 0.666 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.134 0.866 42 H 0.162 0.838 43 H 0.166 0.834 44 H 0.157 0.843 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 16.085 -15.377 7.793 23.578 hybrid contribution -0.873 1.091 0.690 1.558 sum 15.212 -14.287 8.483 22.527 Atomic orbital electron populations 1.70045 1.08016 1.27221 1.54276 1.25655 0.95156 1.02376 0.94655 0.86178 0.79379 0.80135 0.79445 1.18183 1.22788 1.17518 1.20839 0.90110 0.92407 1.46721 0.95030 1.18102 0.93904 0.94775 0.90090 0.95023 1.21522 1.01792 1.00007 0.90672 1.20911 0.79087 0.79979 0.88539 1.90738 1.39354 1.41103 1.72782 1.48653 1.54737 1.19548 1.13649 1.22308 0.96908 0.85367 0.97920 1.22730 1.05131 0.96457 0.90173 1.20608 0.98235 0.93963 0.89746 0.85444 1.25496 0.90484 0.99564 0.94719 1.71875 1.29959 1.19151 1.03639 1.31701 0.81163 0.91204 1.01380 1.85301 1.43615 1.53362 1.15962 1.74682 1.19366 1.13160 1.03812 1.22066 0.96996 0.98317 0.83230 1.20460 0.93698 0.94448 0.97714 1.21032 0.99711 0.99438 0.93697 1.21427 0.97431 0.98714 0.96193 1.21353 1.00263 0.94196 0.99961 1.21331 0.99983 0.99980 0.92809 1.21188 1.00481 0.98007 0.98292 0.93232 0.87258 0.88454 0.88275 0.90189 0.90564 0.85950 0.66611 0.93156 0.92074 0.86606 0.83824 0.83389 0.84345 0.87972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -64.31 13.96 21.45 0.30 -64.01 16 2 C 0.02 1.10 5.47 84.66 0.46 1.57 16 3 Si 0.92 49.04 24.76 68.60 1.70 50.74 16 4 H -0.26 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.30 -16.15 7.11 99.48 0.71 -15.44 16 6 H -0.25 -12.67 5.95 99.48 0.59 -12.08 16 7 C -0.46 -27.30 7.19 25.60 0.18 -27.12 16 8 H 0.03 2.05 8.05 -2.91 -0.02 2.03 16 9 C 0.05 2.40 1.24 -12.29 -0.02 2.38 16 10 H 0.03 1.64 5.26 -2.39 -0.01 1.62 16 11 C -0.10 -3.80 4.03 29.85 0.12 -3.68 16 12 C 0.52 22.16 7.60 87.66 0.67 22.83 16 13 O -0.56 -30.72 15.26 -3.04 -0.05 -30.76 16 14 N -0.63 -20.18 3.34 -810.90 -2.71 -22.88 16 15 C 0.10 1.97 6.48 86.73 0.56 2.53 16 16 C -0.11 -1.77 6.41 31.78 0.20 -1.56 16 17 C 0.00 -0.10 3.58 -10.13 -0.04 -0.14 16 18 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 19 C 0.17 3.73 6.88 138.46 0.95 4.68 16 20 N -0.51 -9.36 11.55 -315.38 -3.64 -13.00 16 21 C 0.18 1.81 13.40 130.51 1.75 3.56 16 22 O 0.08 1.29 11.31 74.85 0.85 2.13 16 23 N -0.40 -9.41 11.87 -60.39 -0.72 -10.13 16 24 C 0.12 3.62 6.38 86.81 0.55 4.18 16 25 C -0.06 -2.61 4.30 -19.87 -0.09 -2.69 16 26 C -0.12 -4.44 8.94 22.27 0.20 -4.24 16 27 C -0.12 -3.58 10.05 22.27 0.22 -3.36 16 28 C -0.14 -3.90 10.05 22.27 0.22 -3.68 16 29 C -0.12 -3.86 10.05 22.27 0.22 -3.64 16 30 C -0.16 -6.24 8.15 22.27 0.18 -6.06 16 31 H 0.26 16.59 8.31 -92.71 -0.77 15.82 16 32 H 0.11 3.26 8.14 -2.38 -0.02 3.24 16 33 H 0.10 3.42 7.33 -2.39 -0.02 3.40 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.52 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.40 7.97 -2.39 -0.02 1.38 16 37 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.32 -1.41 8.06 -2.91 -0.02 -1.43 16 39 H 0.05 1.73 7.85 -2.39 -0.02 1.71 16 40 H 0.06 2.09 8.05 -2.39 -0.02 2.07 16 41 H 0.12 4.20 7.37 -2.91 -0.02 4.18 16 42 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 43 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 44 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 45 H 0.10 4.01 6.77 -2.91 -0.02 3.99 16 Total: -1.00 -90.61 372.31 2.99 -87.62 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.89 Total: 14.74 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 6.37 Total: -14.44 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -6.77 Total: -110.03 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: 0.80 Total: -28.63 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 1.70 Total: 50.74 kcal Total: -90.61 2.99 -87.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363965304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.494 kcal (2) G-P(sol) polarization free energy of solvation -90.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds