Wall clock time and date at job start Sat Apr 11 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99806 * 2 1 4 4 H 1.48502 * 109.46967 * 264.81621 * 3 2 1 5 5 H 1.48497 * 109.47181 * 24.81530 * 3 2 1 6 6 H 1.48495 * 109.47123 * 144.81646 * 3 2 1 7 7 C 1.37872 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00234 * 5.86418 * 7 2 1 9 9 C 1.50703 * 119.99974 * 185.86955 * 7 2 1 10 10 H 1.09002 * 109.47179 * 333.72530 * 9 7 2 11 11 C 1.50704 * 109.47148 * 213.72762 * 9 7 2 12 12 O 1.21276 * 119.99470 * 264.52824 * 11 9 7 13 13 N 1.34775 * 120.00104 * 84.52590 * 11 9 7 14 14 C 1.46928 * 120.62757 * 0.02562 * 13 11 9 15 15 C 1.53196 * 108.77010 * 233.58100 * 14 13 11 16 16 C 1.53038 * 109.31285 * 305.36358 * 15 14 13 17 17 C 1.53043 * 109.53727 * 61.36963 * 16 15 14 18 18 H 1.08999 * 109.49827 * 58.58558 * 17 16 15 19 19 C 1.50694 * 109.49934 * 178.64965 * 17 16 15 20 20 N 1.34494 * 126.28716 * 240.00282 * 19 17 16 21 21 C 1.31130 * 105.61875 * 179.97438 * 20 19 17 22 22 O 1.33642 * 106.89285 * 359.97438 * 21 20 19 23 23 N 1.21294 * 109.81405 * 359.73814 * 22 21 20 24 24 C 1.46926 * 120.63026 * 179.72033 * 13 11 9 25 25 C 1.50707 * 109.47343 * 93.72557 * 9 7 2 26 26 C 1.38227 * 119.99981 * 232.98745 * 25 9 7 27 27 C 1.38234 * 120.00055 * 179.97438 * 26 25 9 28 28 C 1.38239 * 119.99895 * 0.02562 * 27 26 25 29 29 C 1.38234 * 119.99754 * 0.25377 * 28 27 26 30 30 C 1.38234 * 119.99604 * 53.00549 * 25 9 7 31 31 H 0.97000 * 119.99997 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.59044 * 353.36716 * 14 13 11 33 33 H 1.08997 * 109.58662 * 113.79789 * 14 13 11 34 34 H 1.08993 * 109.49450 * 65.31962 * 15 14 13 35 35 H 1.09006 * 109.49145 * 185.38312 * 15 14 13 36 36 H 1.09007 * 109.45787 * 181.38402 * 16 15 14 37 37 H 1.08996 * 109.46612 * 301.34833 * 16 15 14 38 38 H 1.07992 * 126.55599 * 180.02562 * 21 20 19 39 39 H 1.08994 * 109.58353 * 246.20685 * 24 13 11 40 40 H 1.09001 * 109.58313 * 6.62440 * 24 13 11 41 41 H 1.08004 * 120.00124 * 359.97438 * 26 25 9 42 42 H 1.07997 * 120.00516 * 179.97438 * 27 26 25 43 43 H 1.07998 * 119.99924 * 179.97438 * 28 27 26 44 44 H 1.07998 * 120.00064 * 179.72329 * 29 28 27 45 45 H 1.07996 * 120.00358 * 359.97438 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6062 1.9832 -1.3944 5 1 1.3961 2.6818 0.5876 6 1 3.4876 1.4744 0.8067 7 6 2.0046 -1.1940 -0.0005 8 1 1.4689 -2.1268 -0.0965 9 6 3.5057 -1.1974 0.1329 10 1 3.9058 -0.2545 -0.2399 11 6 4.0786 -2.3380 -0.6683 12 8 4.3258 -3.3949 -0.1273 13 7 4.3163 -2.1835 -1.9859 14 6 4.0224 -0.9089 -2.6551 15 6 3.1227 -1.1829 -3.8643 16 6 3.7883 -2.2265 -4.7643 17 6 3.9654 -3.5335 -3.9880 18 1 2.9932 -3.8875 -3.6451 19 6 4.5905 -4.5705 -4.8850 20 7 4.0536 -5.7554 -5.2265 21 6 4.9325 -6.3275 -6.0138 22 8 5.9622 -5.4828 -6.1249 23 7 5.7444 -4.4815 -5.4760 24 6 4.8803 -3.2842 -2.7790 25 6 3.8807 -1.3639 1.5831 26 6 4.7430 -0.4645 2.1816 27 6 5.0866 -0.6169 3.5118 28 6 4.5683 -1.6691 4.2434 29 6 3.7106 -2.5719 3.6432 30 6 3.3627 -2.4164 2.3144 31 1 -0.4850 0.8400 0.0004 32 1 3.5099 -0.2419 -1.9619 33 1 4.9524 -0.4483 -2.9884 34 1 2.1585 -1.5590 -3.5225 35 1 2.9752 -0.2595 -4.4246 36 1 3.1615 -2.4052 -5.6381 37 1 4.7632 -1.8601 -5.0857 38 1 4.8414 -7.2957 -6.4834 39 1 5.8786 -3.0131 -3.1222 40 1 4.9340 -4.1850 -2.1675 41 1 5.1483 0.3573 1.6099 42 1 5.7606 0.0856 3.9794 43 1 4.8371 -1.7884 5.2826 44 1 3.3092 -3.3965 4.2135 45 1 2.6890 -3.1190 1.8469 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364176175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:34 Heat of formation + Delta-G solvation = 61.266529 kcal Electronic energy + Delta-G solvation = -30063.125590 eV Core-core repulsion = 26048.869961 eV Total energy + Delta-G solvation = -4014.255628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.75378 -39.90805 -38.42616 -37.15068 -35.76567 -33.85133 -33.15346 -31.96113 -31.55543 -30.59112 -30.10237 -27.87753 -25.27031 -24.83984 -24.27843 -23.27521 -22.14077 -21.82696 -21.17056 -20.07879 -18.46625 -18.16058 -17.92474 -17.16033 -16.53875 -16.10218 -15.80590 -15.34576 -14.88113 -14.55992 -14.41472 -14.25403 -13.95282 -13.68009 -13.57842 -13.04629 -12.76628 -12.71648 -12.68458 -12.51440 -12.36491 -11.96130 -11.89154 -11.73608 -11.39628 -11.17245 -11.10246 -11.04625 -10.87853 -10.71775 -10.52629 -10.48914 -10.22301 -10.07526 -9.95517 -9.59672 -8.87335 -8.75704 -8.19027 -8.09804 -7.80531 -6.31255 -4.34221 1.04989 2.10967 2.16501 2.24038 2.86383 3.07760 3.21085 3.23318 3.30974 3.54231 3.74690 4.02126 4.19310 4.61897 4.77125 4.83536 4.91099 5.01607 5.14320 5.30192 5.37650 5.52180 5.56975 5.58498 5.63243 5.65680 5.73448 5.81220 5.84339 5.89729 5.96518 6.03531 6.13186 6.14727 6.19305 6.29131 6.35589 6.45087 6.53775 6.74893 6.88534 6.98849 7.19058 7.27706 7.29887 7.62690 7.81451 7.96591 8.04559 8.25002 8.71101 8.97528 9.25717 10.79950 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.003720 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.022527 B = 7525.576653 C = 8757.229613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.088 3.912 3 Si 0.853 3.147 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.252 1.252 7 C -0.506 4.506 8 H 0.082 0.918 9 C 0.035 3.965 10 H 0.059 0.941 11 C 0.541 3.459 12 O -0.553 6.553 13 N -0.613 5.613 14 C 0.107 3.893 15 C -0.132 4.132 16 C -0.106 4.106 17 C -0.014 4.014 18 H 0.109 0.891 19 C 0.185 3.815 20 N -0.481 5.481 21 C 0.153 3.847 22 O 0.074 5.926 23 N -0.378 5.378 24 C 0.126 3.874 25 C -0.038 4.038 26 C -0.133 4.133 27 C -0.134 4.134 28 C -0.141 4.141 29 C -0.133 4.133 30 C -0.064 4.064 31 H 0.269 0.731 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.262 0.738 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.751 -5.123 -9.780 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.117 4.117 3 Si 0.679 3.321 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.543 4.543 8 H 0.100 0.900 9 C 0.013 3.987 10 H 0.077 0.923 11 C 0.332 3.668 12 O -0.430 6.430 13 N -0.347 5.347 14 C -0.016 4.016 15 C -0.170 4.170 16 C -0.145 4.145 17 C -0.036 4.036 18 H 0.127 0.873 19 C -0.088 4.088 20 N -0.214 5.214 21 C -0.088 4.088 22 O 0.015 5.985 23 N -0.085 5.085 24 C 0.001 3.999 25 C -0.039 4.039 26 C -0.151 4.151 27 C -0.152 4.152 28 C -0.159 4.159 29 C -0.151 4.151 30 C -0.082 4.082 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.277 0.723 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.829 -4.828 -9.162 14.278 hybrid contribution 0.163 0.619 -0.282 0.699 sum 9.992 -4.210 -9.444 14.378 Atomic orbital electron populations 1.69856 1.06183 1.27462 1.47981 1.24931 0.94674 0.98520 0.93608 0.87229 0.81437 0.84193 0.79279 1.19403 1.20899 1.17656 1.20433 0.86221 0.95453 1.52188 0.89969 1.18407 0.98648 0.93193 0.88459 0.92310 1.21279 0.74384 0.90289 0.80865 1.90576 1.52748 1.29530 1.70140 1.47979 1.64960 1.13124 1.08604 1.21801 0.98495 0.85940 0.95362 1.21884 1.00346 0.98847 0.95951 1.21556 1.01558 0.93449 0.97927 1.20148 1.00180 0.90733 0.92494 0.87295 1.25833 0.89235 0.94069 0.99657 1.71937 1.29196 1.06431 1.13791 1.30490 0.82526 0.99583 0.96229 1.85309 1.40871 1.20697 1.51583 1.74627 1.18763 1.05109 1.09986 1.21442 0.94815 0.92563 0.91041 1.20122 0.93088 0.93724 0.96984 1.21036 0.99114 0.99707 0.95276 1.20874 1.01180 0.98548 0.94572 1.20878 0.99730 0.96309 0.99009 1.21064 0.99249 0.99324 0.95510 1.20930 0.97478 0.96972 0.92799 0.92088 0.88015 0.92312 0.89860 0.90461 0.91647 0.91336 0.72286 0.91634 0.88957 0.87248 0.87334 0.87377 0.87118 0.86030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.60 13.96 55.43 0.77 -23.83 16 2 C 0.09 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.85 18.93 25.86 -169.99 -4.40 14.54 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.25 -5.36 5.39 56.52 0.30 -5.05 16 7 C -0.51 -12.92 7.73 -34.44 -0.27 -13.18 16 8 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 9 C 0.03 0.78 1.10 -94.07 -0.10 0.67 16 10 H 0.06 1.26 3.64 -51.93 -0.19 1.07 16 11 C 0.54 11.81 6.78 -10.98 -0.07 11.74 16 12 O -0.55 -13.29 14.57 5.56 0.08 -13.21 16 13 N -0.61 -11.23 2.97 -172.49 -0.51 -11.75 16 14 C 0.11 1.73 6.20 -3.71 -0.02 1.71 16 15 C -0.13 -1.89 6.08 -26.61 -0.16 -2.05 16 16 C -0.11 -1.38 5.15 -26.69 -0.14 -1.52 16 17 C -0.01 -0.21 2.82 -91.41 -0.26 -0.47 16 18 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 19 C 0.19 2.54 6.73 -156.38 -1.05 1.49 16 20 N -0.48 -6.05 11.55 -13.73 -0.16 -6.21 16 21 C 0.15 1.23 13.40 51.98 0.70 1.92 16 22 O 0.07 0.76 11.31 18.11 0.20 0.96 16 23 N -0.38 -4.93 12.16 30.87 0.38 -4.56 16 24 C 0.13 2.05 5.73 -3.47 -0.02 2.03 16 25 C -0.04 -0.86 4.56 -104.62 -0.48 -1.33 16 26 C -0.13 -2.70 9.02 -39.59 -0.36 -3.06 16 27 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 28 C -0.14 -2.49 10.05 -39.58 -0.40 -2.89 16 29 C -0.13 -2.56 10.05 -39.58 -0.40 -2.96 16 30 C -0.06 -1.42 8.03 -39.58 -0.32 -1.73 16 31 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.10 1.87 4.07 -51.93 -0.21 1.65 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.26 0.46 8.06 -52.49 -0.42 0.04 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.09 1.66 7.00 -51.93 -0.36 1.30 16 41 H 0.11 2.06 7.26 -52.48 -0.38 1.68 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 45 H 0.12 2.86 7.67 -52.49 -0.40 2.46 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -32.07 366.14 -7.81 -39.87 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -5.85 Total: 8.92 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -3.84 Total: -10.26 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.48 Total: -46.34 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.29 Total: -12.25 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.40 Total: 14.54 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.07 -7.81 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364176175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.141 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds