Wall clock time and date at job start Sat Apr 11 2020 06:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99806 * 2 1 4 4 H 1.48502 * 109.46967 * 264.81621 * 3 2 1 5 5 H 1.48497 * 109.47181 * 24.81530 * 3 2 1 6 6 H 1.48495 * 109.47123 * 144.81646 * 3 2 1 7 7 C 1.37872 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00234 * 5.86418 * 7 2 1 9 9 C 1.50703 * 119.99974 * 185.86955 * 7 2 1 10 10 H 1.09002 * 109.47179 * 333.72530 * 9 7 2 11 11 C 1.50704 * 109.47148 * 213.72762 * 9 7 2 12 12 O 1.21276 * 119.99470 * 264.52824 * 11 9 7 13 13 N 1.34775 * 120.00104 * 84.52590 * 11 9 7 14 14 C 1.46928 * 120.62757 * 0.02562 * 13 11 9 15 15 C 1.53196 * 108.77010 * 233.58100 * 14 13 11 16 16 C 1.53038 * 109.31285 * 305.36358 * 15 14 13 17 17 C 1.53043 * 109.53727 * 61.36963 * 16 15 14 18 18 H 1.08999 * 109.49827 * 58.58558 * 17 16 15 19 19 C 1.50694 * 109.49934 * 178.64965 * 17 16 15 20 20 N 1.34494 * 126.28716 * 240.00282 * 19 17 16 21 21 C 1.31130 * 105.61875 * 179.97438 * 20 19 17 22 22 O 1.33642 * 106.89285 * 359.97438 * 21 20 19 23 23 N 1.21294 * 109.81405 * 359.73814 * 22 21 20 24 24 C 1.46926 * 120.63026 * 179.72033 * 13 11 9 25 25 C 1.50707 * 109.47343 * 93.72557 * 9 7 2 26 26 C 1.38227 * 119.99981 * 232.98745 * 25 9 7 27 27 C 1.38234 * 120.00055 * 179.97438 * 26 25 9 28 28 C 1.38239 * 119.99895 * 0.02562 * 27 26 25 29 29 C 1.38234 * 119.99754 * 0.25377 * 28 27 26 30 30 C 1.38234 * 119.99604 * 53.00549 * 25 9 7 31 31 H 0.97000 * 119.99997 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.59044 * 353.36716 * 14 13 11 33 33 H 1.08997 * 109.58662 * 113.79789 * 14 13 11 34 34 H 1.08993 * 109.49450 * 65.31962 * 15 14 13 35 35 H 1.09006 * 109.49145 * 185.38312 * 15 14 13 36 36 H 1.09007 * 109.45787 * 181.38402 * 16 15 14 37 37 H 1.08996 * 109.46612 * 301.34833 * 16 15 14 38 38 H 1.07992 * 126.55599 * 180.02562 * 21 20 19 39 39 H 1.08994 * 109.58353 * 246.20685 * 24 13 11 40 40 H 1.09001 * 109.58313 * 6.62440 * 24 13 11 41 41 H 1.08004 * 120.00124 * 359.97438 * 26 25 9 42 42 H 1.07997 * 120.00516 * 179.97438 * 27 26 25 43 43 H 1.07998 * 119.99924 * 179.97438 * 28 27 26 44 44 H 1.07998 * 120.00064 * 179.72329 * 29 28 27 45 45 H 1.07996 * 120.00358 * 359.97438 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6062 1.9832 -1.3944 5 1 1.3961 2.6818 0.5876 6 1 3.4876 1.4744 0.8067 7 6 2.0046 -1.1940 -0.0005 8 1 1.4689 -2.1268 -0.0965 9 6 3.5057 -1.1974 0.1329 10 1 3.9058 -0.2545 -0.2399 11 6 4.0786 -2.3380 -0.6683 12 8 4.3258 -3.3949 -0.1273 13 7 4.3163 -2.1835 -1.9859 14 6 4.0224 -0.9089 -2.6551 15 6 3.1227 -1.1829 -3.8643 16 6 3.7883 -2.2265 -4.7643 17 6 3.9654 -3.5335 -3.9880 18 1 2.9932 -3.8875 -3.6451 19 6 4.5905 -4.5705 -4.8850 20 7 4.0536 -5.7554 -5.2265 21 6 4.9325 -6.3275 -6.0138 22 8 5.9622 -5.4828 -6.1249 23 7 5.7444 -4.4815 -5.4760 24 6 4.8803 -3.2842 -2.7790 25 6 3.8807 -1.3639 1.5831 26 6 4.7430 -0.4645 2.1816 27 6 5.0866 -0.6169 3.5118 28 6 4.5683 -1.6691 4.2434 29 6 3.7106 -2.5719 3.6432 30 6 3.3627 -2.4164 2.3144 31 1 -0.4850 0.8400 0.0004 32 1 3.5099 -0.2419 -1.9619 33 1 4.9524 -0.4483 -2.9884 34 1 2.1585 -1.5590 -3.5225 35 1 2.9752 -0.2595 -4.4246 36 1 3.1615 -2.4052 -5.6381 37 1 4.7632 -1.8601 -5.0857 38 1 4.8414 -7.2957 -6.4834 39 1 5.8786 -3.0131 -3.1222 40 1 4.9340 -4.1850 -2.1675 41 1 5.1483 0.3573 1.6099 42 1 5.7606 0.0856 3.9794 43 1 4.8371 -1.7884 5.2826 44 1 3.3092 -3.3965 4.2135 45 1 2.6890 -3.1190 1.8469 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364176175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:33 Heat of formation + Delta-G solvation = 39.471716 kcal Electronic energy + Delta-G solvation = -30064.070684 eV Core-core repulsion = 26048.869961 eV Total energy + Delta-G solvation = -4015.200722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.64602 -41.46772 -39.88151 -38.59091 -36.81653 -35.62343 -34.41794 -33.35086 -33.15334 -31.77762 -31.63048 -29.54207 -26.79796 -26.02296 -25.13400 -24.97195 -23.38965 -23.25830 -22.59591 -21.38058 -19.93914 -19.06506 -19.05326 -18.89954 -18.18601 -17.56591 -16.94621 -16.76450 -16.35522 -15.90713 -15.84753 -15.65594 -15.36902 -15.08067 -14.96990 -14.71275 -14.40767 -14.22127 -14.03873 -13.81877 -13.59750 -13.42831 -13.32313 -12.97677 -12.78215 -12.73163 -12.51655 -12.11999 -12.11234 -12.06064 -12.03945 -11.84279 -11.75620 -11.64595 -11.47747 -11.04749 -10.74728 -10.58802 -9.67005 -9.63973 -9.38550 -8.33681 -6.42424 0.26993 0.62216 0.69662 1.19797 1.32994 1.39875 1.47770 1.74948 2.02931 2.22310 2.31960 2.72431 2.96747 3.09457 3.13761 3.56160 3.75311 3.80151 3.98751 4.03264 4.10998 4.14160 4.21707 4.27823 4.33870 4.39466 4.43412 4.50415 4.54014 4.66284 4.72675 4.74476 4.82620 4.87363 4.90098 4.96490 5.01902 5.08776 5.19414 5.32163 5.33259 5.40274 5.55973 5.68948 5.74340 5.95809 6.17653 6.28167 6.43366 6.59966 7.21273 7.21534 7.28400 8.81581 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.003720 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.022527 B = 7525.576653 C = 8757.229613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.039 3.961 3 Si 0.911 3.089 4 H -0.237 1.237 5 H -0.290 1.290 6 H -0.233 1.233 7 C -0.499 4.499 8 H 0.024 0.976 9 C 0.041 3.959 10 H 0.075 0.925 11 C 0.532 3.468 12 O -0.586 6.586 13 N -0.610 5.610 14 C 0.098 3.902 15 C -0.128 4.128 16 C -0.095 4.095 17 C -0.009 4.009 18 H 0.081 0.919 19 C 0.167 3.833 20 N -0.526 5.526 21 C 0.186 3.814 22 O 0.082 5.918 23 N -0.391 5.391 24 C 0.131 3.869 25 C -0.068 4.068 26 C -0.146 4.146 27 C -0.127 4.127 28 C -0.133 4.133 29 C -0.139 4.139 30 C -0.097 4.097 31 H 0.270 0.730 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.320 0.680 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.127 0.873 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.131 0.869 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.049 -3.671 -10.552 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.162 4.162 3 Si 0.732 3.268 4 H -0.160 1.160 5 H -0.217 1.217 6 H -0.156 1.156 7 C -0.536 4.536 8 H 0.042 0.958 9 C 0.020 3.980 10 H 0.093 0.907 11 C 0.323 3.677 12 O -0.467 6.467 13 N -0.342 5.342 14 C -0.024 4.024 15 C -0.166 4.166 16 C -0.133 4.133 17 C -0.030 4.030 18 H 0.099 0.901 19 C -0.105 4.105 20 N -0.258 5.258 21 C -0.053 4.053 22 O 0.021 5.979 23 N -0.097 5.097 24 C 0.007 3.993 25 C -0.069 4.069 26 C -0.164 4.164 27 C -0.144 4.144 28 C -0.151 4.151 29 C -0.157 4.157 30 C -0.116 4.116 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.335 0.665 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.144 0.856 42 H 0.169 0.831 43 H 0.168 0.832 44 H 0.149 0.851 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.140 -3.377 -9.974 16.839 hybrid contribution -0.859 -0.061 -0.042 0.862 sum 12.280 -3.438 -10.016 16.216 Atomic orbital electron populations 1.70016 1.08299 1.28507 1.50125 1.25728 0.95277 1.02319 0.92835 0.86298 0.80495 0.78629 0.81340 1.16006 1.21680 1.15580 1.20275 0.88103 0.93310 1.51933 0.95779 1.18284 0.96171 0.94097 0.89494 0.90708 1.21264 0.74536 0.89729 0.82163 1.90542 1.54397 1.30484 1.71256 1.48033 1.63808 1.14602 1.07754 1.22050 1.00426 0.84585 0.95289 1.21852 0.98433 1.00521 0.95768 1.21485 1.02406 0.91890 0.97512 1.19910 0.98392 0.92325 0.92358 0.90093 1.25561 0.89941 0.94535 1.00500 1.71910 1.31166 1.06730 1.16038 1.31665 0.80149 0.99989 0.93531 1.85271 1.41229 1.20445 1.50925 1.74603 1.18324 1.06439 1.10361 1.21463 0.96016 0.90844 0.90966 1.20188 0.95026 0.95005 0.96692 1.21305 0.98788 0.99556 0.96712 1.21376 1.00614 0.98873 0.93560 1.21358 0.97896 0.94996 1.00862 1.21353 0.99471 1.00538 0.94302 1.20841 0.98656 0.97375 0.94692 0.92052 0.90082 0.88568 0.93114 0.87555 0.90490 0.89674 0.66524 0.89775 0.91620 0.85555 0.83149 0.83163 0.85116 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.10 13.96 21.45 0.30 -54.80 16 2 C 0.04 2.08 5.47 84.65 0.46 2.55 16 3 Si 0.91 38.78 25.86 68.60 1.77 40.55 16 4 H -0.24 -8.82 7.11 99.48 0.71 -8.11 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.23 -9.10 5.39 99.48 0.54 -8.56 16 7 C -0.50 -27.38 7.73 25.60 0.20 -27.18 16 8 H 0.02 1.55 8.06 -2.91 -0.02 1.53 16 9 C 0.04 1.92 1.10 -13.03 -0.01 1.91 16 10 H 0.08 3.18 3.64 -2.39 -0.01 3.18 16 11 C 0.53 24.64 6.78 87.66 0.59 25.23 16 12 O -0.59 -30.40 14.57 -3.02 -0.04 -30.44 16 13 N -0.61 -23.10 2.97 -818.02 -2.43 -25.52 16 14 C 0.10 3.12 6.20 86.36 0.54 3.65 16 15 C -0.13 -3.60 6.08 30.67 0.19 -3.41 16 16 C -0.09 -2.37 5.15 30.62 0.16 -2.21 16 17 C -0.01 -0.26 2.82 -11.31 -0.03 -0.29 16 18 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 19 C 0.17 4.55 6.73 138.46 0.93 5.48 16 20 N -0.53 -12.90 11.55 -315.41 -3.64 -16.54 16 21 C 0.19 2.48 13.40 130.52 1.75 4.23 16 22 O 0.08 1.47 11.31 74.85 0.85 2.32 16 23 N -0.39 -9.63 12.16 -60.41 -0.73 -10.37 16 24 C 0.13 4.40 5.73 86.52 0.50 4.90 16 25 C -0.07 -3.13 4.56 -19.87 -0.09 -3.22 16 26 C -0.15 -5.63 9.02 22.27 0.20 -5.43 16 27 C -0.13 -4.10 10.05 22.27 0.22 -3.88 16 28 C -0.13 -4.29 10.05 22.27 0.22 -4.07 16 29 C -0.14 -5.30 10.05 22.27 0.22 -5.08 16 30 C -0.10 -4.57 8.03 22.27 0.18 -4.39 16 31 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.08 2.93 4.07 -2.39 -0.01 2.92 16 33 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 36 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.32 -0.36 8.06 -2.91 -0.02 -0.39 16 39 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.07 2.55 7.00 -2.39 -0.02 2.53 16 41 H 0.13 4.36 7.26 -2.91 -0.02 4.33 16 42 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 44 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 45 H 0.08 4.44 7.67 -2.91 -0.02 4.42 16 Total: -1.00 -78.32 366.14 3.15 -75.17 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.85 Total: 30.85 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 6.23 Total: -11.22 kcal Atomic # 7 Polarization: -100.72 SS G_CDS: -6.50 Total: -107.23 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: 0.80 Total: -28.12 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 1.77 Total: 40.55 kcal Total: -78.32 3.15 -75.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364176175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.646 kcal (2) G-P(sol) polarization free energy of solvation -78.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds