Wall clock time and date at job start Sat Apr 11 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86796 * 119.99923 * 2 1 4 4 H 1.48504 * 109.46891 * 275.39716 * 3 2 1 5 5 H 1.48498 * 109.47241 * 35.39490 * 3 2 1 6 6 H 1.48497 * 109.47167 * 155.40300 * 3 2 1 7 7 C 1.39941 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00496 * 342.01527 * 7 2 1 9 9 C 1.41406 * 119.99916 * 162.01424 * 7 2 1 10 10 C 1.40731 * 120.24265 * 330.00106 * 9 7 2 11 11 C 1.37602 * 119.74480 * 180.27534 * 10 9 7 12 12 C 1.38654 * 120.24559 * 359.70125 * 11 10 9 13 13 C 1.38617 * 120.50362 * 0.02562 * 12 11 10 14 14 C 1.37641 * 120.24681 * 359.97438 * 13 12 11 15 15 C 1.50703 * 120.12642 * 180.02562 * 14 13 12 16 16 C 1.50690 * 109.46808 * 264.99567 * 15 14 13 17 17 O 1.21281 * 120.00840 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99671 * 179.97438 * 16 15 14 19 19 C 1.46924 * 120.63329 * 359.97438 * 18 16 15 20 20 C 1.53193 * 108.77706 * 126.41162 * 19 18 16 21 21 C 1.53038 * 109.33860 * 54.62347 * 20 19 18 22 22 C 1.53045 * 109.54005 * 298.68316 * 21 20 19 23 23 H 1.08998 * 109.49497 * 301.35030 * 22 21 20 24 24 C 1.50693 * 109.49998 * 181.28209 * 22 21 20 25 25 N 1.34505 * 126.28559 * 119.77626 * 24 22 21 26 26 C 1.31127 * 105.61191 * 179.90710 * 25 24 22 27 27 O 1.33642 * 106.89869 * 0.35633 * 26 25 24 28 28 N 1.21302 * 109.81339 * 359.76594 * 27 26 25 29 29 C 1.46930 * 120.63293 * 179.97438 * 18 16 15 30 30 H 0.96997 * 119.99817 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.12866 * 359.97438 * 10 9 7 32 32 H 1.07996 * 119.87531 * 179.72429 * 11 10 9 33 33 H 1.08000 * 119.75112 * 180.02562 * 12 11 10 34 34 H 1.08001 * 119.87602 * 179.97438 * 13 12 11 35 35 H 1.08998 * 109.47082 * 144.99534 * 15 14 13 36 36 H 1.09004 * 109.47073 * 24.99624 * 15 14 13 37 37 H 1.08997 * 109.59210 * 246.19798 * 19 18 16 38 38 H 1.09005 * 109.58721 * 6.63207 * 19 18 16 39 39 H 1.09001 * 109.50227 * 174.58744 * 20 19 18 40 40 H 1.09005 * 109.49714 * 294.68768 * 20 19 18 41 41 H 1.09001 * 109.48738 * 178.64917 * 21 20 19 42 42 H 1.08998 * 109.43722 * 58.68407 * 21 20 19 43 43 H 1.08003 * 126.54989 * 180.12718 * 26 25 24 44 44 H 1.09003 * 109.58613 * 113.80013 * 29 18 16 45 45 H 1.09002 * 109.70289 * 353.45093 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3757 2.1122 -1.3939 5 1 1.5014 2.6171 0.8109 6 1 3.5922 1.4099 0.5827 7 6 2.0080 -1.2120 0.0005 8 1 1.5076 -2.1243 0.2897 9 6 3.3702 -1.2421 -0.3776 10 6 3.8682 -0.3113 -1.3083 11 6 5.1943 -0.3535 -1.6732 12 6 6.0402 -1.3044 -1.1230 13 6 5.5618 -2.2225 -0.2011 14 6 4.2390 -2.1988 0.1785 15 6 3.7219 -3.1979 1.1814 16 6 3.1186 -4.3723 0.4551 17 8 3.1098 -4.3962 -0.7574 18 7 2.5898 -5.3968 1.1530 19 6 2.5945 -5.3833 2.6222 20 6 1.1642 -5.6094 3.1220 21 6 0.6101 -6.8967 2.5073 22 6 0.5743 -6.7620 0.9832 23 1 -0.0462 -5.9092 0.7079 24 6 -0.0007 -8.0179 0.3806 25 7 -1.1087 -8.1021 -0.3773 26 6 -1.2323 -9.3715 -0.6819 27 8 -0.2133 -10.0114 -0.1005 28 7 0.4796 -9.2191 0.5024 29 6 1.9975 -6.5486 0.4592 30 1 -0.4850 0.8400 -0.0004 31 1 3.2110 0.4302 -1.7381 32 1 5.5777 0.3569 -2.3906 33 1 7.0797 -1.3300 -1.4148 34 1 6.2295 -2.9591 0.2207 35 1 2.9620 -2.7268 1.8048 36 1 4.5443 -3.5420 1.8086 37 1 3.2411 -6.1786 2.9930 38 1 2.9574 -4.4188 2.9776 39 1 1.1680 -5.6975 4.2085 40 1 0.5383 -4.7672 2.8271 41 1 -0.3989 -7.0728 2.8801 42 1 1.2502 -7.7349 2.7827 43 1 -2.0111 -9.8155 -1.2841 44 1 2.5954 -7.4391 0.6532 45 1 1.9668 -6.3557 -0.6132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364176302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:44 Heat of formation + Delta-G solvation = 27.738556 kcal Electronic energy + Delta-G solvation = -29625.790374 eV Core-core repulsion = 25610.080864 eV Total energy + Delta-G solvation = -4015.709510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.66565 -41.36208 -39.70647 -38.57477 -36.83677 -35.48194 -34.64164 -33.49786 -33.16937 -32.17339 -31.78844 -28.88784 -26.93119 -26.21377 -25.62077 -25.13938 -23.27491 -23.21038 -22.21829 -21.26789 -19.88980 -19.23673 -19.08515 -18.93049 -18.12528 -17.59361 -16.90057 -16.78481 -16.42542 -16.14712 -15.74384 -15.64975 -15.42033 -15.21843 -15.00645 -14.61046 -14.43871 -14.08937 -13.87987 -13.76324 -13.62224 -13.55637 -13.12463 -12.87195 -12.75623 -12.67911 -12.52497 -12.49761 -12.12706 -12.07014 -12.02171 -11.94856 -11.78807 -11.53300 -11.35141 -11.07840 -10.96889 -10.78229 -9.69438 -9.39792 -9.28625 -8.85748 -6.44429 0.23652 0.79270 0.90628 1.17564 1.27361 1.39748 1.49593 1.72159 1.98185 2.14453 2.18813 2.64361 2.71067 3.06762 3.44783 3.60803 3.74364 3.77500 3.97926 4.00713 4.11937 4.18749 4.27779 4.30991 4.43415 4.46672 4.55231 4.58468 4.65109 4.67407 4.71597 4.75044 4.86727 4.92921 4.93734 4.97495 5.04558 5.06367 5.16846 5.30340 5.37919 5.51813 5.67774 5.86913 5.95663 6.05657 6.29843 6.39093 6.47311 6.81022 6.91464 7.18138 7.28111 8.22207 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.003146 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.765153 B = 8897.666425 C = 9496.337260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.049 3.951 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.249 1.249 7 C -0.469 4.469 8 H 0.055 0.945 9 C 0.084 3.916 10 C -0.258 4.258 11 C -0.091 4.091 12 C -0.230 4.230 13 C -0.079 4.079 14 C -0.173 4.173 15 C -0.068 4.068 16 C 0.517 3.483 17 O -0.579 6.579 18 N -0.616 5.616 19 C 0.098 3.902 20 C -0.131 4.131 21 C -0.098 4.098 22 C -0.010 4.010 23 H 0.076 0.924 24 C 0.166 3.834 25 N -0.529 5.529 26 C 0.186 3.814 27 O 0.081 5.919 28 N -0.390 5.390 29 C 0.132 3.868 30 H 0.291 0.709 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.320 0.680 44 H 0.083 0.917 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.419 -16.584 7.810 18.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.165 4.165 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.172 1.172 7 C -0.499 4.499 8 H 0.073 0.927 9 C 0.082 3.918 10 C -0.277 4.277 11 C -0.109 4.109 12 C -0.249 4.249 13 C -0.097 4.097 14 C -0.175 4.175 15 C -0.107 4.107 16 C 0.308 3.692 17 O -0.457 6.457 18 N -0.350 5.350 19 C -0.023 4.023 20 C -0.169 4.169 21 C -0.136 4.136 22 C -0.031 4.031 23 H 0.095 0.905 24 C -0.107 4.107 25 N -0.261 5.261 26 C -0.053 4.053 27 O 0.021 5.979 28 N -0.097 5.097 29 C 0.008 3.992 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.115 0.885 36 H 0.141 0.859 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.135 0.865 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.334 0.666 44 H 0.101 0.899 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.749 -16.242 7.665 17.976 hybrid contribution -0.806 0.727 -0.864 1.387 sum -0.057 -15.515 6.801 16.940 Atomic orbital electron populations 1.69752 1.09117 1.31103 1.37933 1.26774 0.95214 1.04025 0.90475 0.85521 0.79925 0.76924 0.78889 1.19599 1.20351 1.17217 1.19307 0.94071 0.94988 1.41501 0.92722 1.17723 0.92569 0.91660 0.89887 1.21148 0.96900 1.04987 1.04680 1.20975 0.93095 0.98302 0.98572 1.20873 0.99755 1.00194 1.04094 1.20905 0.94505 0.97570 0.96705 1.19570 0.93672 1.01131 1.03094 1.20353 1.01725 0.91426 0.97242 1.21322 0.77024 0.83394 0.87505 1.90652 1.58830 1.79686 1.16548 1.48197 1.59202 1.19248 1.08347 1.22138 0.98199 1.04991 0.76959 1.21939 0.95616 0.96734 1.02588 1.21510 1.02649 0.99422 0.90022 1.19853 0.95628 0.90105 0.97538 0.90517 1.25646 0.91635 0.95115 0.98330 1.71936 1.17782 1.20321 1.16110 1.31655 0.92855 0.85781 0.94983 1.85269 1.30365 1.34974 1.47310 1.74587 1.17294 1.01393 1.16424 1.21271 0.91949 0.89106 0.96904 0.89903 0.89217 0.86099 0.85376 0.85537 0.88452 0.85921 0.88276 0.88024 0.86546 0.92982 0.90820 0.89731 0.66595 0.89855 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.13 13.93 21.83 0.30 -47.82 16 2 C 0.05 2.70 5.41 85.25 0.46 3.16 16 3 Si 0.96 44.33 24.52 68.60 1.68 46.02 16 4 H -0.27 -12.18 6.71 99.48 0.67 -11.51 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.25 -11.50 6.85 99.48 0.68 -10.81 16 7 C -0.47 -26.81 8.56 23.46 0.20 -26.61 16 8 H 0.05 3.38 6.99 -2.91 -0.02 3.36 16 9 C 0.08 4.46 5.10 -21.29 -0.11 4.35 16 10 C -0.26 -13.11 7.17 22.73 0.16 -12.94 16 11 C -0.09 -4.01 10.02 22.22 0.22 -3.79 16 12 C -0.23 -9.31 10.05 22.46 0.23 -9.08 16 13 C -0.08 -3.24 9.66 22.22 0.21 -3.02 16 14 C -0.17 -7.97 4.43 -19.40 -0.09 -8.06 16 15 C -0.07 -2.59 3.54 29.10 0.10 -2.49 16 16 C 0.52 21.26 7.29 87.65 0.64 21.90 16 17 O -0.58 -30.03 15.45 -3.03 -0.05 -30.08 16 18 N -0.62 -19.57 2.97 -818.98 -2.43 -22.01 16 19 C 0.10 2.11 6.34 86.36 0.55 2.65 16 20 C -0.13 -2.58 6.08 30.67 0.19 -2.40 16 21 C -0.10 -2.05 5.15 30.62 0.16 -1.89 16 22 C -0.01 -0.28 2.81 -11.48 -0.03 -0.32 16 23 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 24 C 0.17 4.44 6.73 138.46 0.93 5.37 16 25 N -0.53 -13.31 11.55 -315.39 -3.64 -16.95 16 26 C 0.19 2.59 13.40 130.51 1.75 4.34 16 27 O 0.08 1.46 11.31 74.84 0.85 2.31 16 28 N -0.39 -9.42 12.16 -60.40 -0.73 -10.16 16 29 C 0.13 4.14 5.69 86.35 0.49 4.63 16 30 H 0.29 14.82 8.30 -92.71 -0.77 14.05 16 31 H 0.09 4.61 4.75 -2.91 -0.01 4.59 16 32 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 33 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 34 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 35 H 0.10 3.77 6.70 -2.39 -0.02 3.76 16 36 H 0.12 3.47 7.85 -2.38 -0.02 3.45 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 2.03 5.93 -2.38 -0.01 2.02 16 39 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.32 -0.12 8.06 -2.91 -0.02 -0.14 16 44 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.06 2.18 7.01 -2.39 -0.02 2.16 16 Total: -1.00 -80.94 366.74 3.00 -77.94 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.96 Total: 24.94 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 6.07 Total: -24.19 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -6.51 Total: -96.93 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: 0.80 Total: -27.77 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.68 Total: 46.02 kcal Total: -80.94 3.00 -77.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364176302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.683 kcal (2) G-P(sol) polarization free energy of solvation -80.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds