Wall clock time and date at job start Sat Apr 11 2020 06:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86795 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47604 * 240.00458 * 3 2 1 5 5 H 1.48504 * 109.47070 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47224 * 120.00082 * 3 2 1 7 7 C 1.39947 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99779 * 163.62716 * 7 2 1 9 9 C 1.41397 * 120.00226 * 343.61862 * 7 2 1 10 10 C 1.40738 * 120.24257 * 334.07129 * 9 7 2 11 11 C 1.37600 * 119.74333 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24777 * 359.97438 * 11 10 9 13 13 C 1.38619 * 120.49949 * 359.73090 * 12 11 10 14 14 C 1.37635 * 120.24928 * 0.54763 * 13 12 11 15 15 C 1.50698 * 120.12753 * 179.72613 * 14 13 12 16 16 C 1.50704 * 109.46872 * 264.73102 * 15 14 13 17 17 O 1.21284 * 120.00228 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00044 * 180.27866 * 16 15 14 19 19 C 1.46928 * 120.62750 * 359.43496 * 18 16 15 20 20 C 1.52764 * 109.01185 * 233.58501 * 19 18 16 21 21 C 1.53036 * 109.38453 * 305.59232 * 20 19 18 22 22 C 1.53044 * 109.53845 * 61.23735 * 21 20 19 23 23 H 1.09003 * 109.49964 * 58.58291 * 22 21 20 24 24 C 1.50699 * 109.52422 * 178.66580 * 22 21 20 25 25 N 1.34489 * 126.28736 * 239.56180 * 24 22 21 26 26 C 1.31130 * 105.61426 * 179.90503 * 25 24 22 27 27 O 1.33649 * 106.90029 * 0.35905 * 26 25 24 28 28 N 1.21302 * 109.80184 * 359.76753 * 27 26 25 29 29 C 1.46923 * 120.63339 * 179.72351 * 18 16 15 30 30 H 0.97001 * 119.99933 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.12715 * 359.97438 * 10 9 7 32 32 H 1.07998 * 119.87309 * 179.97438 * 11 10 9 33 33 H 1.08001 * 119.74721 * 179.97438 * 12 11 10 34 34 H 1.07999 * 119.86806 * 180.29858 * 13 12 11 35 35 H 1.08991 * 109.47170 * 144.72734 * 15 14 13 36 36 H 1.09000 * 109.46991 * 24.72536 * 15 14 13 37 37 H 1.09002 * 109.59006 * 353.42459 * 19 18 16 38 38 H 1.09006 * 109.58710 * 113.84891 * 19 18 16 39 39 H 1.08995 * 109.56470 * 185.55079 * 20 19 18 40 40 H 1.09005 * 109.37981 * 65.51804 * 20 19 18 41 41 H 1.09001 * 109.46302 * 301.21795 * 21 20 19 42 42 H 1.08998 * 109.44815 * 181.24545 * 21 20 19 43 43 H 1.08001 * 126.55462 * 180.12683 * 26 25 24 44 44 H 1.09002 * 109.58301 * 246.14986 * 29 18 16 45 45 H 1.08996 * 109.58685 * 6.43309 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0551 -1.2308 -0.2642 9 6 1.3440 -2.4118 0.3443 10 6 0.2133 -2.3809 1.1817 11 6 -0.4246 -3.5547 1.5111 12 6 0.0424 -4.7648 1.0209 13 6 1.1515 -4.8065 0.1904 14 6 1.8087 -3.6454 -0.1476 15 6 3.0179 -3.6946 -1.0456 16 6 4.2677 -3.7243 -0.2040 17 8 4.1847 -3.7068 1.0058 18 7 5.4778 -3.7642 -0.7959 19 6 5.5944 -3.7916 -2.2603 20 6 6.4595 -4.9827 -2.6684 21 6 7.7993 -4.9134 -1.9321 22 6 7.5579 -4.9842 -0.4225 23 1 7.0353 -5.9097 -0.1806 24 6 8.8794 -4.9489 0.3010 25 7 9.3597 -5.8946 1.1278 26 6 10.5294 -5.4550 1.5253 27 8 10.7171 -4.2676 0.9414 28 7 9.7616 -3.9964 0.2451 29 6 6.7054 -3.7875 0.0110 30 1 -0.4850 0.8401 0.0004 31 1 -0.1518 -1.4395 1.5649 32 1 -1.2922 -3.5334 2.1538 33 1 -0.4642 -5.6813 1.2849 34 1 1.5036 -5.7542 -0.1895 35 1 3.0314 -2.8123 -1.6853 36 1 2.9749 -4.5911 -1.6640 37 1 4.6038 -3.8922 -2.7039 38 1 6.0604 -2.8693 -2.6071 39 1 6.6336 -4.9558 -3.7441 40 1 5.9475 -5.9085 -2.4059 41 1 8.2998 -3.9763 -2.1762 42 1 8.4260 -5.7506 -2.2393 43 1 11.2094 -5.9549 2.1991 44 1 7.2639 -2.8648 -0.1468 45 1 6.4477 -3.8827 1.0658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364176310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:46 Heat of formation + Delta-G solvation = 28.000107 kcal Electronic energy + Delta-G solvation = -29444.949807 eV Core-core repulsion = 25429.251638 eV Total energy + Delta-G solvation = -4015.698169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.65082 -41.32973 -39.53942 -38.50470 -36.81573 -35.50744 -34.60634 -33.41603 -33.15126 -31.80498 -31.33412 -28.78607 -27.06234 -26.20981 -25.60930 -25.12746 -23.24261 -22.83596 -22.23264 -21.24061 -19.85887 -19.08326 -19.05985 -18.88547 -18.08758 -17.32979 -16.97324 -16.62386 -16.35270 -16.17810 -15.68212 -15.49544 -15.34392 -15.11310 -14.96534 -14.45906 -14.36219 -14.05367 -13.73124 -13.58993 -13.43439 -13.37771 -12.93117 -12.84998 -12.77174 -12.70529 -12.53267 -12.45361 -12.13492 -12.10248 -12.04514 -11.94525 -11.74652 -11.32453 -11.20579 -11.06792 -11.03926 -10.74491 -9.68241 -9.23149 -9.16319 -8.60540 -6.30186 0.26194 0.98588 1.12018 1.19952 1.33500 1.43485 1.52453 1.75528 1.98092 2.18183 2.21865 2.73433 2.77835 3.09431 3.52966 3.74135 3.77291 3.80351 4.01590 4.06646 4.13709 4.23707 4.35506 4.39651 4.48162 4.57947 4.62198 4.69562 4.70231 4.71306 4.74803 4.80412 4.90670 4.99565 5.00775 5.06709 5.09916 5.18792 5.32572 5.36202 5.54025 5.54671 5.76778 6.03063 6.15722 6.21133 6.41464 6.42240 6.73155 6.98529 7.10747 7.20257 7.30931 8.35907 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012447 B = 0.003122 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.914785 B = 8967.123884 C = 9835.851292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.038 3.962 3 Si 0.968 3.032 4 H -0.252 1.252 5 H -0.264 1.264 6 H -0.274 1.274 7 C -0.484 4.484 8 H 0.068 0.932 9 C 0.096 3.904 10 C -0.194 4.194 11 C -0.117 4.117 12 C -0.242 4.242 13 C -0.091 4.091 14 C -0.188 4.188 15 C -0.063 4.063 16 C 0.519 3.481 17 O -0.576 6.576 18 N -0.615 5.615 19 C 0.095 3.905 20 C -0.124 4.124 21 C -0.102 4.102 22 C -0.004 4.004 23 H 0.096 0.904 24 C 0.165 3.835 25 N -0.522 5.522 26 C 0.184 3.816 27 O 0.078 5.922 28 N -0.397 5.397 29 C 0.128 3.872 30 H 0.286 0.714 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.319 0.681 44 H 0.068 0.932 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.264 -9.341 -6.247 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.176 1.176 5 H -0.189 1.189 6 H -0.199 1.199 7 C -0.513 4.513 8 H 0.086 0.914 9 C 0.094 3.906 10 C -0.214 4.214 11 C -0.136 4.136 12 C -0.261 4.261 13 C -0.109 4.109 14 C -0.189 4.189 15 C -0.102 4.102 16 C 0.309 3.691 17 O -0.455 6.455 18 N -0.349 5.349 19 C -0.027 4.027 20 C -0.162 4.162 21 C -0.140 4.140 22 C -0.025 4.025 23 H 0.114 0.886 24 C -0.108 4.108 25 N -0.254 5.254 26 C -0.055 4.055 27 O 0.018 5.982 28 N -0.104 5.104 29 C 0.004 3.996 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.116 0.884 36 H 0.133 0.867 37 H 0.122 0.878 38 H 0.098 0.902 39 H 0.132 0.868 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.333 0.667 44 H 0.086 0.914 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 19.532 -8.725 -6.144 22.258 hybrid contribution 0.140 0.822 0.853 1.193 sum 19.673 -7.903 -5.291 21.851 Atomic orbital electron populations 1.69869 1.08714 1.30269 1.36263 1.26618 0.95409 1.04005 0.91582 0.85475 0.79051 0.76741 0.79833 1.17618 1.18853 1.19947 1.19568 0.97020 0.92043 1.42712 0.91370 1.17726 0.91360 0.92801 0.88725 1.21302 1.00605 0.96831 1.02649 1.20949 0.99181 0.93382 1.00038 1.20724 1.01680 0.96746 1.06960 1.20741 0.95690 0.96631 0.97856 1.19545 1.00286 0.93482 1.05628 1.20281 0.88601 1.04497 0.96850 1.21308 0.85295 0.74056 0.88452 1.90654 1.87140 1.50611 1.17069 1.48183 1.04293 1.74136 1.08319 1.22046 1.03064 1.00083 0.77485 1.21840 0.94139 0.98111 1.02083 1.21537 0.98829 1.03444 0.90188 1.19860 0.86490 1.00020 0.96128 0.88606 1.25749 0.99519 0.87397 0.98103 1.71900 1.10420 1.29274 1.13836 1.31673 0.94371 0.83268 0.96173 1.85284 1.34362 1.34907 1.43643 1.74626 0.98111 1.23473 1.14236 1.21294 0.85200 0.97292 0.95844 0.90319 0.88594 0.87676 0.86635 0.86482 0.88381 0.86710 0.87831 0.90174 0.86818 0.90916 0.90981 0.90104 0.66664 0.91388 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.42 10.97 21.83 0.24 -44.18 16 2 C 0.04 2.01 5.16 85.26 0.44 2.45 16 3 Si 0.97 40.08 29.59 68.60 2.03 42.11 16 4 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.48 -26.73 8.14 23.46 0.19 -26.54 16 8 H 0.07 3.69 6.68 -2.91 -0.02 3.67 16 9 C 0.10 5.38 5.56 -21.29 -0.12 5.26 16 10 C -0.19 -10.99 8.68 22.73 0.20 -10.79 16 11 C -0.12 -5.89 10.02 22.22 0.22 -5.67 16 12 C -0.24 -11.21 10.05 22.46 0.23 -10.98 16 13 C -0.09 -4.16 9.66 22.22 0.21 -3.95 16 14 C -0.19 -9.18 4.43 -19.41 -0.09 -9.26 16 15 C -0.06 -2.44 3.53 29.10 0.10 -2.34 16 16 C 0.52 20.94 7.33 87.66 0.64 21.59 16 17 O -0.58 -29.47 15.45 -3.04 -0.05 -29.52 16 18 N -0.62 -18.84 2.98 -819.71 -2.44 -21.28 16 19 C 0.09 1.95 6.31 86.22 0.54 2.49 16 20 C -0.12 -1.84 6.06 30.53 0.19 -1.66 16 21 C -0.10 -1.76 5.15 30.62 0.16 -1.60 16 22 C 0.00 -0.09 2.81 -11.46 -0.03 -0.13 16 23 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 24 C 0.17 3.92 6.73 138.46 0.93 4.85 16 25 N -0.52 -11.02 11.55 -315.35 -3.64 -14.67 16 26 C 0.18 2.12 13.40 130.52 1.75 3.87 16 27 O 0.08 1.32 11.31 74.78 0.85 2.16 16 28 N -0.40 -9.22 12.16 -60.39 -0.73 -9.95 16 29 C 0.13 3.85 5.70 86.36 0.49 4.34 16 30 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 31 H 0.10 5.67 6.22 -2.91 -0.02 5.65 16 32 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 33 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 34 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 35 H 0.10 3.77 6.87 -2.39 -0.02 3.75 16 36 H 0.11 3.47 7.59 -2.39 -0.02 3.45 16 37 H 0.10 1.95 5.94 -2.39 -0.01 1.94 16 38 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.32 -0.85 8.06 -2.91 -0.02 -0.88 16 44 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.06 2.21 7.00 -2.39 -0.02 2.19 16 Total: -1.00 -79.16 371.88 3.33 -75.83 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 1.02 Total: 27.55 kcal Atomic # 6 Polarization: -34.12 SS G_CDS: 6.06 Total: -28.06 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -6.58 Total: -90.08 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: 0.80 Total: -27.35 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -79.16 3.33 -75.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364176310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.827 kcal (2) G-P(sol) polarization free energy of solvation -79.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds