Wall clock time and date at job start Sat Apr 11 2020 06:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86799 * 120.00016 * 2 1 4 4 H 1.48499 * 109.46876 * 269.99897 * 3 2 1 5 5 H 1.48499 * 109.47109 * 30.00092 * 3 2 1 6 6 H 1.48496 * 109.47141 * 150.00379 * 3 2 1 7 7 C 1.40037 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99732 * 170.21010 * 7 2 1 9 9 C 1.41543 * 119.99531 * 350.21306 * 7 2 1 10 10 C 1.41165 * 120.99601 * 151.74196 * 9 7 2 11 11 C 1.36592 * 119.13086 * 180.02562 * 10 9 7 12 12 N 1.32063 * 121.25530 * 359.74127 * 11 10 9 13 13 C 1.32495 * 122.23408 * 0.53155 * 12 11 10 14 14 N 1.39457 * 119.65402 * 179.74798 * 13 12 11 15 15 C 1.34784 * 119.99703 * 5.10009 * 14 13 12 16 16 O 1.21583 * 119.99996 * 354.91813 * 15 14 13 17 17 N 1.34770 * 119.99799 * 174.64517 * 15 14 13 18 18 C 1.46505 * 120.00254 * 0.27330 * 17 15 14 19 19 C 1.52998 * 109.47007 * 89.99982 * 18 17 15 20 20 O 1.42899 * 109.46949 * 65.00129 * 19 18 17 21 21 C 1.46503 * 120.00093 * 180.27463 * 17 15 14 22 22 C 1.50706 * 109.47004 * 89.99679 * 21 17 15 23 23 C 1.38230 * 120.00134 * 269.73042 * 22 21 17 24 24 C 1.38240 * 119.99932 * 179.76818 * 23 22 21 25 25 C 1.38234 * 119.99653 * 0.49993 * 24 23 22 26 26 C 1.38233 * 120.00140 * 359.75313 * 25 24 23 27 27 C 1.38233 * 120.00280 * 359.97438 * 26 25 24 28 28 C 1.38644 * 120.69808 * 359.47479 * 13 12 11 29 29 H 0.96991 * 120.00073 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.43611 * 359.97438 * 10 9 7 31 31 H 1.08003 * 119.37212 * 179.97438 * 11 10 9 32 32 H 0.97000 * 120.00431 * 185.09875 * 14 13 12 33 33 H 1.08997 * 109.47168 * 210.00378 * 18 17 15 34 34 H 1.08994 * 109.47033 * 330.00497 * 18 17 15 35 35 H 1.08993 * 109.47111 * 185.00170 * 19 18 17 36 36 H 1.09006 * 109.47012 * 305.00508 * 19 18 17 37 37 H 0.96699 * 114.00134 * 180.02562 * 20 19 18 38 38 H 1.08996 * 109.47204 * 209.99787 * 21 17 15 39 39 H 1.09000 * 109.46804 * 330.00742 * 21 17 15 40 40 H 1.08001 * 119.99836 * 359.97438 * 23 22 21 41 41 H 1.07995 * 120.00223 * 180.23289 * 24 23 22 42 42 H 1.08000 * 119.99881 * 179.72635 * 25 24 23 43 43 H 1.08004 * 119.99616 * 179.97438 * 26 25 24 44 44 H 1.07995 * 120.00468 * 179.97438 * 27 26 25 45 45 H 1.08000 * 120.66181 * 180.27660 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4389 2.6526 0.7001 6 1 3.5390 1.4401 0.6999 7 6 2.0077 -1.2127 -0.0005 8 1 3.0758 -1.2194 -0.1596 9 6 1.3153 -2.4297 0.2073 10 6 1.7918 -3.6399 -0.3414 11 6 1.0931 -4.7921 -0.1173 12 7 -0.0125 -4.7935 0.6049 13 6 -0.5088 -3.6875 1.1397 14 7 -1.6834 -3.7502 1.8888 15 6 -2.2517 -4.9437 2.1523 16 8 -1.7936 -5.9569 1.6607 17 7 -3.3244 -5.0144 2.9651 18 6 -3.8765 -3.7934 3.5574 19 6 -4.9412 -3.2109 2.6257 20 8 -6.0417 -4.1178 2.5343 21 6 -3.9385 -6.3122 3.2564 22 6 -3.2895 -6.9123 4.4770 23 6 -2.1848 -7.7318 4.3401 24 6 -1.5867 -8.2784 5.4602 25 6 -2.0996 -8.0138 6.7162 26 6 -3.2076 -7.1985 6.8527 27 6 -3.8023 -6.6474 5.7331 28 6 0.1304 -2.4694 0.9671 29 1 -0.4850 0.8400 0.0004 30 1 2.6963 -3.6546 -0.9313 31 1 1.4539 -5.7202 -0.5356 32 1 -2.0914 -2.9350 2.2202 33 1 -4.3269 -4.0289 4.5216 34 1 -3.0783 -3.0645 3.6975 35 1 -5.2884 -2.2570 3.0224 36 1 -4.5128 -3.0583 1.6350 37 1 -6.7560 -3.8127 1.9582 38 1 -5.0041 -6.1767 3.4409 39 1 -3.7988 -6.9793 2.4057 40 1 -1.7869 -7.9423 3.3584 41 1 -0.7213 -8.9156 5.3536 42 1 -1.6350 -8.4444 7.5910 43 1 -3.6085 -6.9921 7.8341 44 1 -4.6681 -6.0107 5.8397 45 1 -0.2723 -1.5690 1.4069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364407803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:50 Heat of formation + Delta-G solvation = -2.777807 kcal Electronic energy + Delta-G solvation = -29333.990638 eV Core-core repulsion = 25316.957839 eV Total energy + Delta-G solvation = -4017.032799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.25119 -39.02040 -38.11128 -37.03315 -35.03387 -34.31861 -33.78273 -31.79386 -30.81021 -30.48978 -29.11635 -28.56409 -26.03719 -25.72449 -23.21952 -22.39000 -21.95063 -21.83896 -20.87130 -19.28672 -18.22334 -17.61235 -17.20883 -16.74745 -16.31807 -15.61420 -15.38973 -15.04172 -14.92666 -14.60031 -14.41196 -14.19562 -14.07330 -13.81151 -13.32920 -13.21005 -13.04199 -12.86595 -12.60841 -12.55234 -12.43027 -12.21843 -11.86126 -11.45653 -11.42070 -11.19134 -11.15482 -10.90553 -10.84270 -10.28012 -10.19297 -10.13350 -9.73019 -9.51682 -9.37566 -8.84052 -8.74145 -8.41974 -7.93285 -7.70162 -7.01616 -6.74939 -4.61923 1.35000 1.48982 2.70673 2.80710 2.99573 3.00869 3.05685 3.24370 3.82753 3.86089 3.91354 4.09584 4.23713 4.71408 4.85427 4.89783 4.99785 5.06647 5.06963 5.18604 5.19864 5.37765 5.46542 5.57624 5.67866 5.70255 5.73592 5.91460 5.93909 6.08587 6.15438 6.47618 6.50187 6.59740 6.61703 6.71660 6.77874 6.83399 6.96031 7.08614 7.12548 7.26007 7.42611 7.46388 7.49885 7.86784 8.09707 8.35994 8.46994 8.73014 8.76868 9.19193 9.73511 10.10991 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.003038 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.842247 B = 9213.115868 C =10102.599755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.146 3.854 10 C -0.281 4.281 11 C 0.119 3.881 12 N -0.549 5.549 13 C 0.354 3.646 14 N -0.669 5.669 15 C 0.694 3.306 16 O -0.527 6.527 17 N -0.622 5.622 18 C 0.110 3.890 19 C 0.054 3.946 20 O -0.568 6.568 21 C 0.179 3.821 22 C -0.103 4.103 23 C -0.090 4.090 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.130 4.130 27 C -0.109 4.109 28 C -0.241 4.241 29 H 0.280 0.720 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.401 0.599 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.377 0.623 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.282 -4.769 10.558 16.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.141 4.141 3 Si 0.738 3.262 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.137 3.863 10 C -0.305 4.305 11 C -0.035 4.035 12 N -0.268 5.268 13 C 0.128 3.872 14 N -0.318 5.318 15 C 0.395 3.605 16 O -0.397 6.397 17 N -0.360 5.360 18 C -0.015 4.015 19 C -0.025 4.025 20 O -0.373 6.373 21 C 0.055 3.945 22 C -0.105 4.105 23 C -0.108 4.108 24 C -0.143 4.143 25 C -0.140 4.140 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.267 4.267 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.140 0.860 32 H 0.237 0.763 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.224 0.776 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.149 0.851 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.240 -6.552 10.745 16.874 hybrid contribution 0.266 2.606 -0.336 2.641 sum -10.974 -3.946 10.409 15.631 Atomic orbital electron populations 1.69753 1.07535 1.29070 1.36033 1.25922 0.94861 1.01329 0.92027 0.86231 0.80469 0.80276 0.79272 1.19438 1.20122 1.18457 1.19553 0.95797 0.90001 1.43494 0.90104 1.17562 0.90151 0.92240 0.86330 1.21708 1.04569 0.94745 1.09516 1.21486 0.90816 0.96511 0.94710 1.67216 1.15212 1.28253 1.16088 1.17990 0.85967 0.90881 0.92380 1.42737 1.25942 1.07629 1.55474 1.16057 0.80028 0.84540 0.79837 1.90980 1.62305 1.33287 1.53167 1.47158 1.31751 1.06641 1.50460 1.21562 0.95388 0.87665 0.96846 1.22775 0.87986 0.91921 0.99862 1.86452 1.31095 1.48123 1.71655 1.20142 0.95852 0.83704 0.94759 1.20418 0.96919 0.97761 0.95383 1.21334 0.94486 0.95527 0.99477 1.21196 0.99952 1.00432 0.92691 1.21125 0.96740 0.98894 0.97278 1.21064 0.96820 0.98586 0.98317 1.21029 0.99950 0.99669 0.92106 1.21534 1.01588 0.95271 1.08315 0.90937 0.88039 0.86050 0.76307 0.89594 0.89422 0.92667 0.93001 0.77575 0.89147 0.89326 0.85092 0.86271 0.86516 0.86469 0.86410 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.46 10.83 55.55 0.60 -18.86 16 2 C 0.08 1.83 5.30 -17.34 -0.09 1.74 16 3 Si 0.91 17.89 29.57 -169.99 -5.03 12.86 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.26 7.11 56.52 0.40 -4.85 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 7 C -0.46 -11.72 9.13 -37.65 -0.34 -12.06 16 8 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 9 C 0.15 3.83 5.58 -106.55 -0.59 3.23 16 10 C -0.28 -6.94 9.85 -39.07 -0.38 -7.33 16 11 C 0.12 2.88 11.10 -18.05 -0.20 2.68 16 12 N -0.55 -14.15 7.86 -12.76 -0.10 -14.25 16 13 C 0.35 8.66 7.42 -154.68 -1.15 7.51 16 14 N -0.67 -13.45 5.22 -15.86 -0.08 -13.53 16 15 C 0.69 13.69 8.24 -86.92 -0.72 12.98 16 16 O -0.53 -12.35 13.73 5.29 0.07 -12.28 16 17 N -0.62 -9.28 2.42 -180.80 -0.44 -9.72 16 18 C 0.11 1.24 5.54 -4.04 -0.02 1.22 16 19 C 0.05 0.54 7.39 37.16 0.27 0.81 16 20 O -0.57 -5.61 12.48 -35.23 -0.44 -6.05 16 21 C 0.18 2.47 5.35 -5.19 -0.03 2.44 16 22 C -0.10 -1.41 5.46 -104.62 -0.57 -1.99 16 23 C -0.09 -1.33 9.70 -39.58 -0.38 -1.72 16 24 C -0.12 -1.63 10.05 -39.58 -0.40 -2.02 16 25 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 26 C -0.13 -1.43 10.05 -39.59 -0.40 -1.83 16 27 C -0.11 -1.28 9.70 -39.58 -0.38 -1.66 16 28 C -0.24 -6.11 8.60 -38.46 -0.33 -6.44 16 29 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 30 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 31 H 0.12 2.59 8.06 -52.48 -0.42 2.16 16 32 H 0.40 6.76 6.50 -40.82 -0.27 6.49 16 33 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 34 H 0.09 0.95 6.44 -51.93 -0.33 0.61 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.38 2.26 9.12 45.56 0.42 2.67 16 38 H 0.09 1.09 7.06 -51.93 -0.37 0.72 16 39 H 0.09 1.37 7.36 -51.93 -0.38 0.99 16 40 H 0.13 2.18 7.60 -52.49 -0.40 1.78 16 41 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 43 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 44 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.13 3.19 6.27 -52.49 -0.33 2.87 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -32.81 381.14 -10.80 -43.61 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -5.01 Total: 16.72 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -6.12 Total: -4.24 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.02 Total: -56.36 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.37 Total: -18.33 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.81 -10.80 -43.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364407803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.832 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds