Wall clock time and date at job start Sat Apr 11 2020 06:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00406 * 2 1 4 4 H 1.48500 * 109.47339 * 265.39496 * 3 2 1 5 5 H 1.48503 * 109.47030 * 25.39000 * 3 2 1 6 6 H 1.48499 * 109.47240 * 145.39014 * 3 2 1 7 7 C 1.37877 * 119.99533 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00475 * 5.21276 * 7 2 1 9 9 C 1.50699 * 119.99945 * 185.21580 * 7 2 1 10 10 H 1.09006 * 109.46997 * 334.24801 * 9 7 2 11 11 C 1.50701 * 109.47379 * 214.25118 * 9 7 2 12 12 O 1.21282 * 119.99743 * 262.31695 * 11 9 7 13 13 N 1.34771 * 120.00225 * 82.30872 * 11 9 7 14 14 C 1.46927 * 120.63283 * 359.72486 * 13 11 9 15 15 C 1.53629 * 108.54093 * 126.36429 * 14 13 11 16 16 C 1.53033 * 109.23975 * 54.86021 * 15 14 13 17 17 C 1.50705 * 109.45594 * 178.48848 * 16 15 14 18 18 N 1.34502 * 126.28753 * 239.77851 * 17 16 15 19 19 C 1.31126 * 105.61296 * 179.90461 * 18 17 16 20 20 O 1.33640 * 106.90038 * 0.35783 * 19 18 17 21 21 N 1.21300 * 109.81162 * 359.76304 * 20 19 18 22 22 C 1.53037 * 109.53964 * 298.50684 * 16 15 14 23 23 C 1.46927 * 120.63005 * 180.02562 * 13 11 9 24 24 C 1.50696 * 109.47441 * 94.24499 * 9 7 2 25 25 C 1.38230 * 120.00425 * 233.57968 * 24 9 7 26 26 C 1.38238 * 120.00216 * 179.97438 * 25 24 9 27 27 C 1.38236 * 119.99866 * 359.97438 * 26 25 24 28 28 C 1.38238 * 119.99901 * 0.07444 * 27 26 25 29 29 C 1.38229 * 120.00098 * 359.88493 * 28 27 26 30 30 H 0.97005 * 119.99703 * 359.97438 * 1 2 3 31 31 H 1.08992 * 109.58986 * 246.19676 * 14 13 11 32 32 H 1.09004 * 109.58208 * 6.62534 * 14 13 11 33 33 H 1.09005 * 109.63448 * 294.86693 * 15 14 13 34 34 H 1.09004 * 109.45383 * 174.74222 * 15 14 13 35 35 H 1.08999 * 109.46167 * 58.52914 * 16 15 14 36 36 H 1.08000 * 126.54690 * 180.11905 * 19 18 17 37 37 H 1.09001 * 109.49523 * 301.41370 * 22 16 15 38 38 H 1.09001 * 109.52777 * 181.34087 * 22 16 15 39 39 H 1.09001 * 109.58758 * 353.36988 * 23 13 11 40 40 H 1.08994 * 109.58843 * 113.80271 * 23 13 11 41 41 H 1.07998 * 119.99961 * 359.97438 * 25 24 9 42 42 H 1.07994 * 119.99704 * 179.72813 * 26 25 24 43 43 H 1.07994 * 119.99880 * 179.97438 * 27 26 25 44 44 H 1.08002 * 119.99488 * 179.97438 * 28 27 26 45 45 H 1.07995 * 119.99906 * 180.11226 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.5941 1.9901 -1.3955 5 1 1.4014 2.6788 0.6003 6 1 3.4946 1.4701 0.7952 7 6 2.0044 -1.1941 -0.0005 8 1 1.4678 -2.1275 -0.0859 9 6 3.5067 -1.1970 0.1181 10 1 3.9025 -0.2525 -0.2555 11 6 4.0726 -2.3344 -0.6926 12 8 4.3633 -3.3796 -0.1504 13 7 4.2553 -2.1902 -2.0200 14 6 3.9021 -0.9323 -2.6921 15 6 5.1265 -0.4373 -3.4769 16 6 5.6002 -1.5432 -4.4227 17 6 6.7786 -1.0495 -5.2219 18 7 6.8476 -0.9532 -6.5617 19 6 8.0425 -0.4792 -6.8204 20 8 8.6569 -0.3121 -5.6455 21 7 7.9168 -0.6441 -4.7436 22 6 6.0149 -2.7705 -3.6080 23 6 4.8054 -3.2903 -2.8238 24 6 3.8962 -1.3680 1.5638 25 6 4.7541 -0.4630 2.1603 26 6 5.1109 -0.6197 3.4866 27 6 4.6094 -1.6810 4.2165 28 6 3.7522 -2.5866 3.6197 29 6 3.3948 -2.4295 2.2938 30 1 -0.4850 0.8401 0.0004 31 1 3.0712 -1.1043 -3.3763 32 1 3.6176 -0.1881 -1.9483 33 1 5.9281 -0.1836 -2.7833 34 1 4.8539 0.4449 -4.0563 35 1 4.7900 -1.8137 -5.0999 36 1 8.4531 -0.2681 -7.7968 37 1 6.8082 -2.4948 -2.9132 38 1 6.3747 -3.5495 -4.2802 39 1 5.1173 -4.1023 -2.1669 40 1 4.0466 -3.6503 -3.5184 41 1 5.1457 0.3664 1.5901 42 1 5.7847 0.0849 3.9513 43 1 4.8885 -1.8036 5.2526 44 1 3.3607 -3.4161 4.1900 45 1 2.7237 -3.1360 1.8281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364904825.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:58 Heat of formation + Delta-G solvation = 61.212248 kcal Electronic energy + Delta-G solvation = -29967.989152 eV Core-core repulsion = 25953.731170 eV Total energy + Delta-G solvation = -4014.257982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.82538 -39.89887 -38.44397 -37.26559 -35.76140 -33.81994 -33.31828 -31.73196 -31.42285 -30.88369 -30.09428 -27.86644 -26.12470 -24.37327 -23.84453 -23.11851 -22.68344 -21.81760 -21.14647 -20.11121 -18.44809 -18.22656 -18.12145 -17.17945 -16.55447 -16.06910 -15.77827 -15.34552 -14.83688 -14.72931 -14.60876 -14.10807 -14.08241 -13.73762 -13.54577 -13.03883 -12.80258 -12.75263 -12.66255 -12.41747 -12.37618 -11.95832 -11.88611 -11.79456 -11.47343 -11.29973 -11.23694 -11.04454 -11.02356 -10.81959 -10.62551 -10.48322 -10.24359 -10.06739 -9.94948 -9.58764 -8.84726 -8.74877 -8.16879 -8.08810 -7.79159 -6.31117 -4.34090 0.98643 2.04207 2.17340 2.24976 2.79923 3.07722 3.21238 3.23454 3.39321 3.57374 3.58214 3.94051 4.19436 4.62542 4.67726 4.74636 4.75445 5.01631 5.13034 5.18763 5.38390 5.43053 5.49100 5.56969 5.61212 5.62804 5.69505 5.78505 5.79205 5.81887 5.88086 5.95910 6.05965 6.12208 6.16717 6.27417 6.35764 6.37703 6.46018 6.75855 6.89451 7.03308 7.20188 7.28503 7.30581 7.63468 7.82525 7.97882 7.99079 8.25513 8.71223 9.00669 9.26117 10.80295 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012406 B = 0.003610 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.394170 B = 7753.939332 C = 8456.475202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.087 3.913 3 Si 0.852 3.148 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.252 1.252 7 C -0.507 4.507 8 H 0.082 0.918 9 C 0.033 3.967 10 H 0.059 0.941 11 C 0.540 3.460 12 O -0.554 6.554 13 N -0.615 5.615 14 C 0.116 3.884 15 C -0.130 4.130 16 C 0.003 3.997 17 C 0.180 3.820 18 N -0.485 5.485 19 C 0.152 3.848 20 O 0.075 5.925 21 N -0.375 5.375 22 C -0.123 4.123 23 C 0.115 3.885 24 C -0.037 4.037 25 C -0.133 4.133 26 C -0.133 4.133 27 C -0.141 4.141 28 C -0.133 4.133 29 C -0.064 4.064 30 H 0.269 0.731 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.261 0.739 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.883 0.525 -10.720 17.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.118 4.118 3 Si 0.678 3.322 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.176 1.176 7 C -0.544 4.544 8 H 0.100 0.900 9 C 0.011 3.989 10 H 0.077 0.923 11 C 0.332 3.668 12 O -0.432 6.432 13 N -0.349 5.349 14 C -0.008 4.008 15 C -0.169 4.169 16 C -0.017 4.017 17 C -0.093 4.093 18 N -0.217 5.217 19 C -0.090 4.090 20 O 0.016 5.984 21 N -0.081 5.081 22 C -0.162 4.162 23 C -0.008 4.008 24 C -0.038 4.038 25 C -0.151 4.151 26 C -0.151 4.151 27 C -0.160 4.160 28 C -0.151 4.151 29 C -0.082 4.082 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.277 0.723 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.614 -0.054 -9.657 16.691 hybrid contribution 0.437 1.237 -0.518 1.410 sum 14.051 1.183 -10.175 17.388 Atomic orbital electron populations 1.69854 1.06189 1.27460 1.48079 1.24937 0.94682 0.98537 0.93621 0.87234 0.81467 0.84211 0.79252 1.19455 1.20849 1.17625 1.20456 0.86202 0.95418 1.52316 0.89966 1.18416 0.98605 0.93354 0.88500 0.92315 1.21213 0.74618 0.90005 0.81005 1.90573 1.51829 1.30254 1.70559 1.47989 1.64791 1.14374 1.07711 1.21787 0.95027 0.86710 0.97247 1.22148 0.99616 0.97080 0.98084 1.19666 0.90952 0.96126 0.94968 1.25995 0.95791 0.99725 0.87766 1.71915 1.18228 1.18328 1.13258 1.30478 0.88201 0.95768 0.94503 1.85332 1.38939 1.60927 1.13157 1.74668 1.04077 1.17336 1.12068 1.21978 0.99372 0.96122 0.98734 1.21431 0.94137 0.90849 0.94427 1.20111 0.93018 0.93638 0.97007 1.21035 0.99128 0.99660 0.95318 1.20873 1.01182 0.98463 0.94621 1.20873 0.99824 0.96224 0.99042 1.21058 0.99227 0.99321 0.95525 1.20915 0.97524 0.96985 0.92812 0.92084 0.90808 0.88227 0.90751 0.90602 0.87718 0.72344 0.90808 0.90875 0.88670 0.91664 0.87293 0.87350 0.87381 0.87117 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.88 13.96 55.43 0.77 -24.10 16 2 C 0.09 2.28 5.47 -17.82 -0.10 2.19 16 3 Si 0.85 19.20 25.91 -169.99 -4.41 14.80 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.25 -5.43 5.32 56.52 0.30 -5.13 16 7 C -0.51 -13.07 7.84 -34.44 -0.27 -13.34 16 8 H 0.08 2.38 8.06 -52.48 -0.42 1.96 16 9 C 0.03 0.74 1.10 -94.08 -0.10 0.64 16 10 H 0.06 1.28 3.53 -51.93 -0.18 1.09 16 11 C 0.54 11.75 6.80 -10.99 -0.07 11.68 16 12 O -0.55 -13.18 14.54 5.56 0.08 -13.10 16 13 N -0.61 -11.06 2.97 -172.48 -0.51 -11.57 16 14 C 0.12 1.88 6.23 -3.48 -0.02 1.86 16 15 C -0.13 -1.77 5.36 -26.39 -0.14 -1.91 16 16 C 0.00 0.04 2.62 -91.73 -0.24 -0.20 16 17 C 0.18 2.23 6.72 -156.36 -1.05 1.18 16 18 N -0.48 -5.29 11.55 -13.72 -0.16 -5.45 16 19 C 0.15 1.07 13.40 51.98 0.70 1.76 16 20 O 0.08 0.74 11.31 18.11 0.20 0.94 16 21 N -0.38 -4.77 12.16 30.88 0.38 -4.40 16 22 C -0.12 -1.56 5.34 -26.59 -0.14 -1.70 16 23 C 0.11 1.70 6.43 -3.69 -0.02 1.68 16 24 C -0.04 -0.83 4.54 -104.63 -0.47 -1.30 16 25 C -0.13 -2.74 9.01 -39.58 -0.36 -3.09 16 26 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16 27 C -0.14 -2.51 10.05 -39.58 -0.40 -2.91 16 28 C -0.13 -2.57 10.05 -39.58 -0.40 -2.96 16 29 C -0.06 -1.43 8.02 -39.58 -0.32 -1.75 16 30 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.10 1.83 4.14 -51.93 -0.22 1.61 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.26 0.22 8.06 -52.49 -0.42 -0.20 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.53 7.01 -51.93 -0.36 1.17 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.11 2.09 7.20 -52.49 -0.38 1.72 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 45 H 0.12 2.84 7.70 -52.49 -0.40 2.44 16 LS Contribution 366.13 15.07 5.52 5.52 Total: -1.00 -32.60 366.13 -7.79 -40.39 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.85 Total: 8.01 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -3.81 Total: -11.03 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.48 Total: -45.52 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.29 Total: -12.16 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.41 Total: 14.80 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.60 -7.79 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364904825.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.599 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds