Wall clock time and date at job start Sat Apr 11 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00406 * 2 1 4 4 H 1.48500 * 109.47339 * 265.39496 * 3 2 1 5 5 H 1.48503 * 109.47030 * 25.39000 * 3 2 1 6 6 H 1.48499 * 109.47240 * 145.39014 * 3 2 1 7 7 C 1.37877 * 119.99533 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00475 * 5.21276 * 7 2 1 9 9 C 1.50699 * 119.99945 * 185.21580 * 7 2 1 10 10 H 1.09006 * 109.46997 * 334.24801 * 9 7 2 11 11 C 1.50701 * 109.47379 * 214.25118 * 9 7 2 12 12 O 1.21282 * 119.99743 * 262.31695 * 11 9 7 13 13 N 1.34771 * 120.00225 * 82.30872 * 11 9 7 14 14 C 1.46927 * 120.63283 * 359.72486 * 13 11 9 15 15 C 1.53629 * 108.54093 * 126.36429 * 14 13 11 16 16 C 1.53033 * 109.23975 * 54.86021 * 15 14 13 17 17 C 1.50705 * 109.45594 * 178.48848 * 16 15 14 18 18 N 1.34502 * 126.28753 * 239.77851 * 17 16 15 19 19 C 1.31126 * 105.61296 * 179.90461 * 18 17 16 20 20 O 1.33640 * 106.90038 * 0.35783 * 19 18 17 21 21 N 1.21300 * 109.81162 * 359.76304 * 20 19 18 22 22 C 1.53037 * 109.53964 * 298.50684 * 16 15 14 23 23 C 1.46927 * 120.63005 * 180.02562 * 13 11 9 24 24 C 1.50696 * 109.47441 * 94.24499 * 9 7 2 25 25 C 1.38230 * 120.00425 * 233.57968 * 24 9 7 26 26 C 1.38238 * 120.00216 * 179.97438 * 25 24 9 27 27 C 1.38236 * 119.99866 * 359.97438 * 26 25 24 28 28 C 1.38238 * 119.99901 * 0.07444 * 27 26 25 29 29 C 1.38229 * 120.00098 * 359.88493 * 28 27 26 30 30 H 0.97005 * 119.99703 * 359.97438 * 1 2 3 31 31 H 1.08992 * 109.58986 * 246.19676 * 14 13 11 32 32 H 1.09004 * 109.58208 * 6.62534 * 14 13 11 33 33 H 1.09005 * 109.63448 * 294.86693 * 15 14 13 34 34 H 1.09004 * 109.45383 * 174.74222 * 15 14 13 35 35 H 1.08999 * 109.46167 * 58.52914 * 16 15 14 36 36 H 1.08000 * 126.54690 * 180.11905 * 19 18 17 37 37 H 1.09001 * 109.49523 * 301.41370 * 22 16 15 38 38 H 1.09001 * 109.52777 * 181.34087 * 22 16 15 39 39 H 1.09001 * 109.58758 * 353.36988 * 23 13 11 40 40 H 1.08994 * 109.58843 * 113.80271 * 23 13 11 41 41 H 1.07998 * 119.99961 * 359.97438 * 25 24 9 42 42 H 1.07994 * 119.99704 * 179.72813 * 26 25 24 43 43 H 1.07994 * 119.99880 * 179.97438 * 27 26 25 44 44 H 1.08002 * 119.99488 * 179.97438 * 28 27 26 45 45 H 1.07995 * 119.99906 * 180.11226 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.5941 1.9901 -1.3955 5 1 1.4014 2.6788 0.6003 6 1 3.4946 1.4701 0.7952 7 6 2.0044 -1.1941 -0.0005 8 1 1.4678 -2.1275 -0.0859 9 6 3.5067 -1.1970 0.1181 10 1 3.9025 -0.2525 -0.2555 11 6 4.0726 -2.3344 -0.6926 12 8 4.3633 -3.3796 -0.1504 13 7 4.2553 -2.1902 -2.0200 14 6 3.9021 -0.9323 -2.6921 15 6 5.1265 -0.4373 -3.4769 16 6 5.6002 -1.5432 -4.4227 17 6 6.7786 -1.0495 -5.2219 18 7 6.8476 -0.9532 -6.5617 19 6 8.0425 -0.4792 -6.8204 20 8 8.6569 -0.3121 -5.6455 21 7 7.9168 -0.6441 -4.7436 22 6 6.0149 -2.7705 -3.6080 23 6 4.8054 -3.2903 -2.8238 24 6 3.8962 -1.3680 1.5638 25 6 4.7541 -0.4630 2.1603 26 6 5.1109 -0.6197 3.4866 27 6 4.6094 -1.6810 4.2165 28 6 3.7522 -2.5866 3.6197 29 6 3.3948 -2.4295 2.2938 30 1 -0.4850 0.8401 0.0004 31 1 3.0712 -1.1043 -3.3763 32 1 3.6176 -0.1881 -1.9483 33 1 5.9281 -0.1836 -2.7833 34 1 4.8539 0.4449 -4.0563 35 1 4.7900 -1.8137 -5.0999 36 1 8.4531 -0.2681 -7.7968 37 1 6.8082 -2.4948 -2.9132 38 1 6.3747 -3.5495 -4.2802 39 1 5.1173 -4.1023 -2.1669 40 1 4.0466 -3.6503 -3.5184 41 1 5.1457 0.3664 1.5901 42 1 5.7847 0.0849 3.9513 43 1 4.8885 -1.8036 5.2526 44 1 3.3607 -3.4161 4.1900 45 1 2.7237 -3.1360 1.8281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364904825.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:57 Heat of formation + Delta-G solvation = 39.240006 kcal Electronic energy + Delta-G solvation = -29968.941940 eV Core-core repulsion = 25953.731170 eV Total energy + Delta-G solvation = -4015.210770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.60151 -41.42804 -39.87477 -38.63764 -36.72093 -35.62805 -34.46182 -33.44925 -32.50590 -32.14542 -31.63543 -29.53026 -27.39972 -25.54937 -25.08561 -24.36387 -23.84998 -23.36885 -22.49039 -21.39375 -19.87275 -19.15499 -19.01718 -18.92425 -18.14310 -17.55921 -16.91209 -16.54547 -16.37499 -16.07772 -15.82252 -15.61784 -15.42869 -15.10279 -14.84905 -14.76781 -14.39106 -14.19104 -13.93001 -13.83098 -13.54069 -13.40434 -13.27380 -12.94366 -12.78915 -12.75105 -12.54044 -12.33904 -12.12667 -12.10234 -12.00859 -11.85666 -11.74377 -11.65713 -11.47762 -10.98148 -10.76667 -10.53762 -9.64353 -9.63613 -9.38173 -8.35867 -6.43906 0.33089 0.62185 0.69634 1.26634 1.29414 1.36666 1.44235 1.80924 2.12826 2.25307 2.29002 2.70798 2.95291 3.13259 3.16485 3.63899 3.66975 3.84401 3.92683 4.05096 4.10920 4.21081 4.22838 4.32980 4.34394 4.37510 4.41697 4.47116 4.61382 4.68351 4.73213 4.77088 4.81560 4.83718 4.88666 4.91103 4.95191 5.08913 5.18893 5.23673 5.32114 5.39702 5.63239 5.69062 5.74369 5.95142 6.17457 6.28278 6.45283 6.59203 7.20017 7.27636 7.33172 8.79451 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012406 B = 0.003610 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.394170 B = 7753.939332 C = 8456.475202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.040 3.960 3 Si 0.908 3.092 4 H -0.241 1.241 5 H -0.288 1.288 6 H -0.235 1.235 7 C -0.499 4.499 8 H 0.029 0.971 9 C 0.038 3.962 10 H 0.070 0.930 11 C 0.532 3.468 12 O -0.585 6.585 13 N -0.612 5.612 14 C 0.111 3.889 15 C -0.118 4.118 16 C 0.007 3.993 17 C 0.168 3.832 18 N -0.515 5.515 19 C 0.181 3.819 20 O 0.075 5.925 21 N -0.404 5.404 22 C -0.108 4.108 23 C 0.112 3.888 24 C -0.067 4.067 25 C -0.148 4.148 26 C -0.127 4.127 27 C -0.134 4.134 28 C -0.137 4.137 29 C -0.096 4.096 30 H 0.271 0.729 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.318 0.682 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.122 0.878 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.133 0.867 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.025 2.402 -11.614 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.161 4.161 3 Si 0.730 3.270 4 H -0.165 1.165 5 H -0.215 1.215 6 H -0.159 1.159 7 C -0.537 4.537 8 H 0.047 0.953 9 C 0.016 3.984 10 H 0.088 0.912 11 C 0.323 3.677 12 O -0.465 6.465 13 N -0.344 5.344 14 C -0.011 4.011 15 C -0.157 4.157 16 C -0.013 4.013 17 C -0.105 4.105 18 N -0.248 5.248 19 C -0.058 4.058 20 O 0.016 5.984 21 N -0.111 5.111 22 C -0.148 4.148 23 C -0.010 4.010 24 C -0.068 4.068 25 C -0.166 4.166 26 C -0.145 4.145 27 C -0.151 4.151 28 C -0.155 4.155 29 C -0.115 4.115 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.133 0.867 36 H 0.332 0.668 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.139 0.861 42 H 0.167 0.833 43 H 0.169 0.831 44 H 0.151 0.849 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 16.775 1.817 -10.603 19.928 hybrid contribution -0.500 0.545 -0.277 0.790 sum 16.275 2.362 -10.880 19.719 Atomic orbital electron populations 1.70002 1.08155 1.28477 1.50241 1.25684 0.95255 1.02132 0.92990 0.86341 0.80531 0.79087 0.81062 1.16464 1.21462 1.15852 1.20331 0.88046 0.93403 1.51891 0.95263 1.18299 0.96211 0.94278 0.89602 0.91193 1.21122 0.74873 0.89396 0.82355 1.90538 1.53399 1.31027 1.71575 1.48056 1.63668 1.15828 1.06861 1.21888 0.96867 0.85452 0.96925 1.22011 0.97740 0.98063 0.97907 1.19540 0.91723 0.95198 0.94821 1.25846 0.95628 1.00494 0.88501 1.71902 1.20259 1.20178 1.12435 1.31673 0.86654 0.92250 0.95248 1.85293 1.38566 1.60780 1.13764 1.74676 1.04517 1.18328 1.13587 1.21825 0.97468 0.97043 0.98414 1.21615 0.95597 0.89619 0.94189 1.20178 0.94917 0.94917 0.96751 1.21278 0.99012 0.99528 0.96776 1.21358 1.00653 0.98905 0.93573 1.21355 0.98019 0.94894 1.00869 1.21367 0.99298 1.00519 0.94336 1.20847 0.98680 0.97287 0.94673 0.92016 0.89974 0.90248 0.91724 0.89005 0.86697 0.66756 0.92363 0.88782 0.90282 0.89865 0.86051 0.83337 0.83132 0.84900 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.15 13.96 21.45 0.30 -54.85 16 2 C 0.04 2.16 5.47 84.65 0.46 2.62 16 3 Si 0.91 39.63 25.91 68.60 1.78 41.41 16 4 H -0.24 -9.37 7.11 99.48 0.71 -8.66 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.24 -9.55 5.32 99.48 0.53 -9.03 16 7 C -0.50 -27.42 7.84 25.60 0.20 -27.22 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 9 C 0.04 1.77 1.10 -13.03 -0.01 1.76 16 10 H 0.07 3.07 3.53 -2.38 -0.01 3.07 16 11 C 0.53 24.36 6.80 87.66 0.60 24.95 16 12 O -0.58 -29.58 14.54 -3.04 -0.04 -29.63 16 13 N -0.61 -22.69 2.97 -817.99 -2.43 -25.12 16 14 C 0.11 3.63 6.23 86.51 0.54 4.17 16 15 C -0.12 -3.09 5.36 30.82 0.17 -2.92 16 16 C 0.01 0.17 2.62 -11.51 -0.03 0.14 16 17 C 0.17 3.83 6.72 138.46 0.93 4.76 16 18 N -0.52 -9.80 11.55 -315.38 -3.64 -13.44 16 19 C 0.18 1.86 13.40 130.52 1.75 3.61 16 20 O 0.08 1.26 11.31 74.86 0.85 2.11 16 21 N -0.40 -9.55 12.16 -60.39 -0.73 -10.29 16 22 C -0.11 -2.68 5.34 30.68 0.16 -2.51 16 23 C 0.11 3.37 6.43 86.37 0.56 3.93 16 24 C -0.07 -3.09 4.54 -19.87 -0.09 -3.18 16 25 C -0.15 -5.88 9.01 22.27 0.20 -5.68 16 26 C -0.13 -4.23 10.05 22.27 0.22 -4.00 16 27 C -0.13 -4.33 10.05 22.27 0.22 -4.11 16 28 C -0.14 -5.23 10.05 22.27 0.22 -5.00 16 29 C -0.10 -4.51 8.02 22.27 0.18 -4.33 16 30 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 31 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.08 2.92 4.14 -2.39 -0.01 2.91 16 33 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.32 -1.23 8.06 -2.91 -0.02 -1.25 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.08 2.65 7.01 -2.39 -0.02 2.64 16 40 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.12 4.41 7.20 -2.91 -0.02 4.39 16 42 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 43 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 44 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 45 H 0.09 4.53 7.70 -2.91 -0.02 4.51 16 Total: -1.00 -77.36 366.13 3.20 -74.17 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.84 Total: 28.65 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 6.28 Total: -13.01 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -6.50 Total: -103.70 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: 0.80 Total: -27.51 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.78 Total: 41.41 kcal Total: -77.36 3.20 -74.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364904825.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.406 kcal (2) G-P(sol) polarization free energy of solvation -77.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds