Wall clock time and date at job start Sat Apr 11 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99891 * 2 1 4 4 H 1.48510 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47283 * 299.99929 * 3 2 1 6 6 H 1.48502 * 109.47425 * 60.00261 * 3 2 1 7 7 C 1.37879 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00311 * 185.08727 * 7 2 1 9 9 C 1.50700 * 119.99873 * 5.09600 * 7 2 1 10 10 H 1.09004 * 109.47182 * 185.76913 * 9 7 2 11 11 C 1.50698 * 109.47260 * 305.77078 * 9 7 2 12 12 O 1.21284 * 120.00053 * 120.00073 * 11 9 7 13 13 N 1.34771 * 119.99936 * 300.00538 * 11 9 7 14 14 C 1.46934 * 120.63045 * 179.97438 * 13 11 9 15 15 C 1.53185 * 108.77603 * 233.62581 * 14 13 11 16 16 C 1.53041 * 109.31677 * 305.36774 * 15 14 13 17 17 C 1.50698 * 109.46186 * 181.38266 * 16 15 14 18 18 N 1.34495 * 126.28653 * 120.02207 * 17 16 15 19 19 C 1.31130 * 105.61474 * 180.02562 * 18 17 16 20 20 O 1.33642 * 106.89774 * 0.02562 * 19 18 17 21 21 N 1.21302 * 109.80978 * 359.97438 * 20 19 18 22 22 C 1.53039 * 109.53685 * 61.36062 * 16 15 14 23 23 C 1.46929 * 120.63364 * 0.02562 * 13 11 9 24 24 C 1.50705 * 109.47306 * 65.77292 * 9 7 2 25 25 C 1.38238 * 119.99904 * 174.80585 * 24 9 7 26 26 C 1.38231 * 119.99631 * 179.81092 * 25 24 9 27 27 C 1.38233 * 120.00254 * 0.39868 * 26 25 24 28 28 C 1.38238 * 120.00011 * 359.85259 * 27 26 25 29 29 C 1.38233 * 119.99893 * 359.95899 * 28 27 26 30 30 H 0.96993 * 120.00243 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.58352 * 113.83780 * 14 13 11 32 32 H 1.08997 * 109.70066 * 353.49076 * 14 13 11 33 33 H 1.09002 * 109.49938 * 185.41423 * 15 14 13 34 34 H 1.09002 * 109.52537 * 65.33326 * 15 14 13 35 35 H 1.08999 * 109.45655 * 301.36047 * 16 15 14 36 36 H 1.08001 * 126.54945 * 180.26039 * 19 18 17 37 37 H 1.09002 * 109.49768 * 58.59376 * 22 16 15 38 38 H 1.09002 * 109.49439 * 178.68119 * 22 16 15 39 39 H 1.09005 * 109.58774 * 246.16297 * 23 13 11 40 40 H 1.09000 * 109.58428 * 6.58145 * 23 13 11 41 41 H 1.07995 * 119.99901 * 0.02562 * 25 24 9 42 42 H 1.08001 * 120.00043 * 180.23471 * 26 25 24 43 43 H 1.07998 * 120.00389 * 179.83681 * 27 26 25 44 44 H 1.08004 * 120.00144 * 179.97438 * 28 27 26 45 45 H 1.07997 * 119.99897 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0814 -1.1959 0.0835 9 6 1.2555 -2.4966 -0.1148 10 1 1.9507 -3.3275 0.0059 11 6 0.1993 -2.5654 0.9579 12 8 -0.9694 -2.6730 0.6522 13 7 0.5534 -2.5074 2.2570 14 6 -0.4649 -2.5727 3.3142 15 6 -0.2912 -1.3657 4.2413 16 6 1.1491 -1.3269 4.7574 17 6 1.3146 -0.1601 5.6967 18 7 1.6782 -0.2247 6.9899 19 6 1.6945 1.0159 7.4144 20 8 1.3443 1.7852 6.3792 21 7 1.1314 1.0931 5.4061 22 6 2.1115 -1.1723 3.5776 23 6 1.9651 -2.3764 2.6430 24 6 0.6015 -2.5818 -1.4699 25 6 -0.0552 -3.7376 -1.8490 26 6 -0.6584 -3.8143 -3.0904 27 6 -0.5978 -2.7382 -3.9559 28 6 0.0634 -1.5842 -3.5789 29 6 0.6632 -1.5061 -2.3359 30 1 -0.4850 0.8400 0.0004 31 1 -0.3404 -3.4929 3.8850 32 1 -1.4593 -2.5510 2.8683 33 1 -0.9773 -1.4523 5.0838 34 1 -0.5050 -0.4496 3.6907 35 1 1.3701 -2.2537 5.2869 36 1 1.9468 1.3520 8.4093 37 1 1.8752 -0.2583 3.0328 38 1 3.1355 -1.1212 3.9478 39 1 2.2882 -3.2806 3.1590 40 1 2.5747 -2.2239 1.7524 41 1 -0.1000 -4.5794 -1.1739 42 1 -1.1748 -4.7159 -3.3851 43 1 -1.0668 -2.7990 -4.9269 44 1 0.1110 -0.7436 -4.2553 45 1 1.1801 -0.6048 -2.0415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364904828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:00 Heat of formation + Delta-G solvation = 69.187351 kcal Electronic energy + Delta-G solvation = -30710.020229 eV Core-core repulsion = 26696.108073 eV Total energy + Delta-G solvation = -4013.912156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.60086 -39.44289 -38.11817 -36.80340 -35.42803 -33.86160 -32.99637 -31.30207 -30.94796 -30.45189 -29.65064 -27.39834 -25.79373 -24.15265 -23.91606 -22.75384 -22.49332 -21.26571 -20.71009 -19.86952 -18.16003 -18.00243 -17.90739 -17.05720 -15.87599 -15.58081 -15.42498 -14.93686 -14.70408 -14.45597 -14.08438 -13.96248 -13.69039 -13.56954 -13.26317 -12.58856 -12.53110 -12.45362 -12.32634 -12.21220 -11.80510 -11.68744 -11.60186 -11.32046 -11.19938 -11.03658 -10.95231 -10.77916 -10.71056 -10.54988 -10.38702 -10.11557 -10.07046 -9.76924 -9.72405 -9.38238 -8.63886 -8.26683 -7.77077 -7.60869 -7.40541 -6.18993 -4.30792 1.21816 2.27531 2.49227 2.59107 3.01619 3.17498 3.28432 3.29909 3.68246 4.00660 4.19239 4.20811 4.39427 4.96411 4.98165 5.03679 5.09894 5.15750 5.45704 5.58284 5.71003 5.75144 5.82589 5.84117 5.92535 5.96995 6.01920 6.08355 6.10563 6.13979 6.24732 6.36779 6.51709 6.58079 6.61220 6.67876 6.79570 6.81591 6.85819 7.08124 7.21334 7.49362 7.59752 7.60696 7.68215 7.78098 8.13217 8.22810 8.24522 8.55354 8.75500 9.31309 9.72647 10.81638 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016615 B = 0.003928 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.777148 B = 7126.033647 C = 8169.182101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.077 3.923 3 Si 0.875 3.125 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.070 0.930 9 C 0.056 3.944 10 H 0.055 0.945 11 C 0.561 3.439 12 O -0.548 6.548 13 N -0.614 5.614 14 C 0.122 3.878 15 C -0.121 4.121 16 C 0.005 3.995 17 C 0.181 3.819 18 N -0.486 5.486 19 C 0.144 3.856 20 O 0.076 5.924 21 N -0.370 5.370 22 C -0.121 4.121 23 C 0.115 3.885 24 C -0.017 4.017 25 C -0.114 4.114 26 C -0.143 4.143 27 C -0.144 4.144 28 C -0.148 4.148 29 C -0.059 4.059 30 H 0.266 0.734 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.259 0.741 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.123 0.877 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.136 -1.328 10.435 11.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.131 4.131 3 Si 0.701 3.299 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.088 0.912 9 C 0.035 3.965 10 H 0.073 0.927 11 C 0.353 3.647 12 O -0.424 6.424 13 N -0.349 5.349 14 C -0.002 4.002 15 C -0.160 4.160 16 C -0.016 4.016 17 C -0.092 4.092 18 N -0.219 5.219 19 C -0.097 4.097 20 O 0.016 5.984 21 N -0.076 5.076 22 C -0.160 4.160 23 C -0.009 4.009 24 C -0.018 4.018 25 C -0.133 4.133 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.167 4.167 29 C -0.077 4.077 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.275 0.725 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.141 0.859 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.102 -1.427 9.475 10.071 hybrid contribution 0.335 1.466 0.655 1.640 sum 3.437 0.039 10.130 10.697 Atomic orbital electron populations 1.70058 1.05274 1.26973 1.44838 1.24964 0.94809 0.98974 0.94341 0.86788 0.80534 0.84361 0.78193 1.19331 1.20630 1.20604 1.20672 0.93246 0.88866 1.54549 0.91203 1.17943 0.92539 0.98158 0.87897 0.92685 1.20897 0.90061 0.71753 0.82025 1.90521 1.20530 1.49863 1.81476 1.47815 1.05950 1.75617 1.05489 1.21230 0.94834 0.95234 0.88885 1.21929 0.93675 1.01353 0.99077 1.19694 0.98006 0.91368 0.92497 1.26085 0.98800 0.93711 0.90619 1.71887 1.19280 1.21475 1.09307 1.30433 0.96730 0.85044 0.97478 1.85352 1.61209 1.36545 1.15279 1.74746 1.19716 1.05467 1.07621 1.21906 0.97353 1.01959 0.94772 1.21780 0.84015 0.94634 1.00445 1.19846 0.94668 0.91921 0.95401 1.20880 0.98674 0.98220 0.95477 1.20777 1.01944 0.98167 0.95205 1.20793 1.01855 0.94580 0.98953 1.21070 1.00814 0.97208 0.97569 1.21423 0.96219 0.98867 0.91176 0.92369 0.93040 0.89240 0.91913 0.90497 0.88565 0.72543 0.90001 0.91776 0.93766 0.85908 0.88070 0.88002 0.88127 0.88024 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.23 10.42 55.43 0.58 -21.65 16 2 C 0.08 1.87 3.19 -17.82 -0.06 1.82 16 3 Si 0.87 19.60 29.54 -169.99 -5.02 14.57 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.54 -12.47 5.31 -34.44 -0.18 -12.65 16 8 H 0.07 1.58 7.56 -52.49 -0.40 1.18 16 9 C 0.06 1.28 1.89 -94.07 -0.18 1.10 16 10 H 0.06 1.16 7.94 -51.93 -0.41 0.74 16 11 C 0.56 13.18 5.31 -10.99 -0.06 13.12 16 12 O -0.55 -14.70 14.58 5.55 0.08 -14.62 16 13 N -0.61 -12.20 2.97 -172.80 -0.51 -12.71 16 14 C 0.12 2.16 6.43 -3.71 -0.02 2.13 16 15 C -0.12 -2.00 5.34 -26.61 -0.14 -2.14 16 16 C 0.00 0.07 2.62 -91.73 -0.24 -0.17 16 17 C 0.18 2.77 6.72 -156.38 -1.05 1.72 16 18 N -0.49 -6.37 11.55 -13.72 -0.16 -6.53 16 19 C 0.14 1.35 13.40 51.98 0.70 2.05 16 20 O 0.08 0.96 11.31 18.10 0.20 1.17 16 21 N -0.37 -6.07 12.16 30.87 0.38 -5.69 16 22 C -0.12 -2.00 5.34 -26.64 -0.14 -2.15 16 23 C 0.11 1.96 5.88 -3.74 -0.02 1.94 16 24 C -0.02 -0.41 4.50 -104.62 -0.47 -0.88 16 25 C -0.11 -2.51 8.75 -39.58 -0.35 -2.85 16 26 C -0.14 -2.86 10.05 -39.59 -0.40 -3.25 16 27 C -0.14 -2.82 10.05 -39.58 -0.40 -3.22 16 28 C -0.15 -3.14 10.05 -39.58 -0.40 -3.54 16 29 C -0.06 -1.39 8.00 -39.58 -0.32 -1.71 16 30 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.78 7.01 -51.93 -0.36 1.42 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.26 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.12 2.26 4.40 -51.93 -0.23 2.03 16 41 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 42 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 43 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 45 H 0.14 3.37 4.97 -52.49 -0.26 3.11 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -31.63 364.14 -8.57 -40.19 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.87 Total: 8.48 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -3.73 Total: -8.69 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.28 Total: -46.59 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.29 Total: -13.46 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.63 -8.57 -40.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364904828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.381 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds