Wall clock time and date at job start Sat Apr 11 2020 06:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86802 * 120.00024 * 2 1 4 4 H 1.48504 * 109.47148 * 274.98565 * 3 2 1 5 5 H 1.48502 * 109.47179 * 34.98285 * 3 2 1 6 6 H 1.48504 * 109.47337 * 154.98361 * 3 2 1 7 7 C 1.40030 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99971 * 173.67135 * 7 2 1 9 9 C 1.41332 * 120.00223 * 353.66847 * 7 2 1 10 10 C 1.40601 * 119.79169 * 186.32482 * 9 7 2 11 11 C 1.38312 * 119.13066 * 179.97438 * 10 9 7 12 12 C 1.38683 * 118.66843 * 359.73283 * 11 10 9 13 13 C 1.39640 * 119.49847 * 0.55175 * 12 11 10 14 14 N 1.39246 * 119.57661 * 179.70306 * 13 12 11 15 15 C 1.34780 * 120.00099 * 341.17548 * 14 13 12 16 16 O 1.21575 * 120.00069 * 354.20205 * 15 14 13 17 17 N 1.34781 * 120.00068 * 174.20306 * 15 14 13 18 18 C 1.46503 * 119.99627 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.46778 * 180.02562 * 18 17 15 20 20 C 1.50692 * 109.47174 * 180.02562 * 19 18 17 21 21 C 1.38237 * 120.00322 * 89.99667 * 20 19 18 22 22 C 1.38237 * 120.00090 * 180.02562 * 21 20 19 23 23 C 1.38226 * 120.00047 * 0.02562 * 22 21 20 24 24 C 1.50707 * 120.00117 * 179.97438 * 23 22 21 25 25 O 1.42903 * 109.46962 * 89.99780 * 24 23 22 26 26 C 1.38234 * 120.00451 * 0.24885 * 23 22 21 27 27 C 1.38241 * 119.99633 * 359.49449 * 26 23 22 28 28 N 1.31926 * 120.84904 * 359.43702 * 13 12 11 29 29 H 0.97001 * 120.00280 * 0.02562 * 1 2 3 30 30 H 1.08005 * 120.43441 * 359.97438 * 10 9 7 31 31 H 1.08004 * 120.66200 * 180.02562 * 11 10 9 32 32 H 1.08001 * 120.24820 * 180.27853 * 12 11 10 33 33 H 0.96999 * 120.00271 * 161.16674 * 14 13 12 34 34 H 0.96994 * 119.99818 * 359.97438 * 17 15 14 35 35 H 1.08995 * 109.47443 * 59.99867 * 18 17 15 36 36 H 1.08996 * 109.47060 * 299.99709 * 18 17 15 37 37 H 1.08995 * 109.47309 * 59.99703 * 19 18 17 38 38 H 1.09009 * 109.46777 * 299.99753 * 19 18 17 39 39 H 1.08002 * 120.00071 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.99838 * 179.97438 * 22 21 20 41 41 H 1.08993 * 109.46817 * 330.00247 * 24 23 22 42 42 H 1.09002 * 109.47239 * 209.99484 * 24 23 22 43 43 H 0.96698 * 113.99867 * 180.02562 * 25 24 23 44 44 H 1.08003 * 120.00659 * 179.73073 * 26 23 22 45 45 H 1.07996 * 120.00206 * 180.22884 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1073 -1.3948 5 1 1.4955 2.6200 0.8027 6 1 3.5877 1.4121 0.5921 7 6 2.0075 -1.2127 0.0005 8 1 3.0826 -1.2156 -0.1026 9 6 1.3074 -2.4329 0.1361 10 6 2.0213 -3.6368 0.2700 11 6 1.3223 -4.8229 0.4023 12 6 -0.0639 -4.7817 0.4037 13 6 -0.7155 -3.5549 0.2610 14 7 -2.1073 -3.5123 0.2559 15 6 -2.8148 -4.6321 0.0069 16 8 -2.2414 -5.6541 -0.3167 17 7 -4.1581 -4.6188 0.1166 18 6 -4.9272 -5.8359 -0.1546 19 6 -6.4178 -5.5512 0.0402 20 6 -7.2089 -6.8032 -0.2382 21 6 -7.4811 -7.6909 0.7860 22 6 -8.2063 -8.8396 0.5305 23 6 -8.6589 -9.1010 -0.7491 24 6 -9.4491 -10.3537 -1.0278 25 8 -10.8416 -10.0886 -0.8466 26 6 -8.3819 -8.2163 -1.7745 27 6 -7.6612 -7.0648 -1.5180 28 7 -0.0293 -2.4350 0.1360 29 1 -0.4850 0.8400 -0.0004 30 1 3.1013 -3.6353 0.2697 31 1 1.8456 -5.7619 0.5072 32 1 -0.6352 -5.6920 0.5099 33 1 -2.5676 -2.6768 0.4317 34 1 -4.6155 -3.8035 0.3751 35 1 -4.6147 -6.6235 0.5310 36 1 -4.7500 -6.1565 -1.1811 37 1 -6.7299 -4.7637 -0.6457 38 1 -6.5953 -5.2304 1.0667 39 1 -7.1264 -7.4873 1.7856 40 1 -8.4186 -9.5333 1.3306 41 1 -9.1367 -11.1405 -0.3412 42 1 -9.2709 -10.6749 -2.0540 43 1 -11.4118 -10.8525 -1.0092 44 1 -8.7318 -8.4226 -2.7752 45 1 -7.4479 -6.3717 -2.3183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365076058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:03 Heat of formation + Delta-G solvation = -12.508835 kcal Electronic energy + Delta-G solvation = -27229.470784 eV Core-core repulsion = 23212.016016 eV Total energy + Delta-G solvation = -4017.454768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.12367 -39.76704 -37.91320 -37.19090 -35.49889 -34.17452 -33.34914 -32.85284 -31.22791 -30.37546 -29.83046 -28.71832 -25.96527 -25.32952 -23.23887 -23.04709 -21.74162 -21.53004 -20.97426 -20.14844 -18.17671 -17.88875 -17.33320 -16.53911 -16.51986 -16.25804 -15.62004 -15.39160 -15.06213 -14.63855 -14.52778 -14.31461 -14.18414 -13.90374 -13.84231 -13.56098 -13.33050 -13.04359 -12.85371 -12.45088 -12.31155 -11.96215 -11.90720 -11.69677 -11.27972 -11.26771 -11.18701 -11.06386 -10.87059 -10.64510 -10.53042 -10.10574 -9.80765 -9.29724 -9.19203 -9.07433 -8.95154 -8.87191 -7.99723 -7.64727 -7.02858 -6.39960 -4.47395 0.92456 1.13806 2.70319 2.93711 2.98949 3.09822 3.13392 3.27232 3.35279 3.72923 3.96625 4.05024 4.43010 4.43257 4.61259 4.70587 4.72269 4.77304 4.81271 4.87775 4.97790 5.03052 5.19224 5.33680 5.36558 5.69029 5.69778 5.82909 5.87324 5.94136 6.09224 6.18861 6.26794 6.33796 6.46213 6.53166 6.69070 6.75341 6.84885 6.96968 7.12724 7.14286 7.25812 7.54492 7.65193 7.93872 8.10061 8.19863 8.46263 8.72955 8.92392 9.07393 10.08280 10.33495 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026972 B = 0.001667 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.882743 B =16793.924779 C =17491.046125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.072 3.928 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.437 4.437 8 H 0.085 0.915 9 C 0.280 3.720 10 C -0.291 4.291 11 C -0.049 4.049 12 C -0.312 4.312 13 C 0.374 3.626 14 N -0.659 5.659 15 C 0.706 3.294 16 O -0.569 6.569 17 N -0.750 5.750 18 C 0.147 3.853 19 C -0.094 4.094 20 C -0.070 4.070 21 C -0.115 4.115 22 C -0.098 4.098 23 C -0.100 4.100 24 C 0.117 3.883 25 O -0.568 6.568 26 C -0.097 4.097 27 C -0.115 4.115 28 N -0.509 5.509 29 H 0.270 0.730 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.403 0.597 34 H 0.395 0.605 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.379 0.621 44 H 0.122 0.878 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.514 -13.034 -0.205 24.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.152 4.152 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.154 3.846 10 C -0.314 4.314 11 C -0.074 4.074 12 C -0.337 4.337 13 C 0.138 3.862 14 N -0.306 5.306 15 C 0.406 3.594 16 O -0.446 6.446 17 N -0.407 5.407 18 C 0.023 3.977 19 C -0.132 4.132 20 C -0.071 4.071 21 C -0.133 4.133 22 C -0.116 4.116 23 C -0.100 4.100 24 C 0.040 3.960 25 O -0.374 6.374 26 C -0.116 4.116 27 C -0.133 4.133 28 N -0.228 5.228 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.150 0.850 33 H 0.238 0.762 34 H 0.229 0.771 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.227 0.773 44 H 0.140 0.860 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.395 -12.471 -0.441 23.910 hybrid contribution 0.147 0.222 0.098 0.284 sum -20.248 -12.249 -0.343 23.667 Atomic orbital electron populations 1.70122 1.07221 1.27412 1.29846 1.26028 0.94860 1.00964 0.93392 0.86338 0.80655 0.80992 0.78948 1.19600 1.20194 1.18500 1.19547 0.94617 0.89351 1.43370 0.89702 1.18170 0.86312 0.92052 0.88095 1.21701 0.98749 0.93758 1.17186 1.20806 0.93698 0.96543 0.96356 1.21623 0.94520 0.98139 1.19432 1.18214 0.81976 0.91347 0.94617 1.42258 1.05563 1.10706 1.72065 1.15756 0.81163 0.83939 0.78521 1.90841 1.68473 1.32053 1.53228 1.45105 1.05123 1.14370 1.76105 1.21081 0.88195 0.86591 1.01867 1.20818 0.93497 0.95431 1.03410 1.19718 0.97763 0.95999 0.93632 1.21079 0.98859 0.94199 0.99194 1.21015 0.97377 0.97254 0.95917 1.19598 0.99497 0.96787 0.94092 1.20988 0.81065 0.94102 0.99885 1.86575 1.16816 1.40745 1.93294 1.21022 0.97863 0.93824 0.98849 1.21087 0.98335 0.97498 0.96404 1.68017 1.08399 1.24637 1.21715 0.91927 0.88272 0.88383 0.84984 0.76177 0.77092 0.91436 0.91474 0.90022 0.90039 0.85623 0.85982 0.92721 0.92718 0.77347 0.85976 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.89 11.49 55.55 0.64 -18.25 16 2 C 0.07 1.82 5.49 -17.35 -0.10 1.73 16 3 Si 0.91 18.54 29.56 -169.99 -5.03 13.52 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.44 -11.77 9.13 -37.73 -0.34 -12.11 16 8 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 9 C 0.28 7.83 6.54 -85.00 -0.56 7.27 16 10 C -0.29 -7.45 9.83 -38.66 -0.38 -7.83 16 11 C -0.05 -1.20 10.15 -39.39 -0.40 -1.60 16 12 C -0.31 -7.85 8.83 -38.89 -0.34 -8.19 16 13 C 0.37 9.46 7.51 -154.99 -1.16 8.30 16 14 N -0.66 -13.53 5.42 -15.79 -0.09 -13.61 16 15 C 0.71 13.31 8.40 -86.91 -0.73 12.58 16 16 O -0.57 -12.78 13.14 5.30 0.07 -12.71 16 17 N -0.75 -9.85 5.56 -65.23 -0.36 -10.21 16 18 C 0.15 1.68 5.66 -4.04 -0.02 1.66 16 19 C -0.09 -0.77 5.46 -27.89 -0.15 -0.92 16 20 C -0.07 -0.64 5.13 -104.62 -0.54 -1.18 16 21 C -0.12 -1.02 9.70 -39.58 -0.38 -1.41 16 22 C -0.10 -0.86 9.70 -39.59 -0.38 -1.24 16 23 C -0.10 -0.89 5.51 -104.62 -0.58 -1.46 16 24 C 0.12 0.77 7.17 36.01 0.26 1.03 16 25 O -0.57 -4.17 13.64 -35.23 -0.48 -4.66 16 26 C -0.10 -0.86 9.70 -39.58 -0.38 -1.25 16 27 C -0.12 -1.03 9.70 -39.58 -0.38 -1.42 16 28 N -0.51 -14.06 7.92 -10.26 -0.08 -14.14 16 29 H 0.27 6.35 8.29 -40.82 -0.34 6.01 16 30 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 31 H 0.10 2.06 8.06 -52.48 -0.42 1.63 16 32 H 0.13 3.30 5.33 -52.50 -0.28 3.02 16 33 H 0.40 7.33 8.84 -40.82 -0.36 6.97 16 34 H 0.40 4.00 8.49 -40.82 -0.35 3.65 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 38 H 0.08 0.58 8.09 -51.92 -0.42 0.16 16 39 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.05 0.28 8.08 -51.93 -0.42 -0.14 16 42 H 0.05 0.29 8.08 -51.93 -0.42 -0.13 16 43 H 0.38 0.89 9.12 45.56 0.42 1.31 16 44 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 45 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 386.58 15.07 5.83 5.83 Total: -1.00 -35.01 386.58 -11.26 -46.28 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -5.18 Total: 13.99 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -6.58 Total: -6.04 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.11 Total: -56.21 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.41 Total: -17.37 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.01 -11.26 -46.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365076058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.768 kcal (2) G-P(sol) polarization free energy of solvation -35.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds