Wall clock time and date at job start Sat Apr 11 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39771 * 120.08226 * 254.89335 * 3 2 1 5 5 C 1.37697 * 119.92408 * 179.97438 * 4 3 2 6 6 C 1.39102 * 120.07655 * 359.97438 * 5 4 3 7 7 N 1.39542 * 119.91643 * 179.97438 * 6 5 4 8 8 C 1.45754 * 117.95030 * 288.75861 * 7 6 5 9 9 C 1.52917 * 110.49073 * 199.07769 * 8 7 6 10 10 C 1.53341 * 108.66276 * 309.23034 * 9 8 7 11 11 C 1.53066 * 108.43853 * 67.52814 * 10 9 8 12 12 H 1.09002 * 109.33003 * 71.20531 * 11 10 9 13 13 N 1.46902 * 109.40527 * 190.98979 * 11 10 9 14 14 C 1.47955 * 111.00023 * 190.43179 * 13 11 10 15 15 C 1.53942 * 86.18126 * 222.41523 * 14 13 11 16 16 O 1.42901 * 113.73043 * 269.25996 * 15 14 13 17 17 C 1.50692 * 113.73473 * 138.07440 * 15 14 13 18 18 H 1.08001 * 119.99887 * 17.05922 * 17 15 14 19 19 C 1.37882 * 119.99786 * 197.04569 * 17 15 14 20 20 N 1.31514 * 119.99934 * 195.29489 * 19 17 15 21 21 Si 1.86794 * 119.99984 * 15.29972 * 19 17 15 22 22 H 1.48501 * 109.46992 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.47315 * 59.99441 * 21 19 17 24 24 H 1.48499 * 109.46962 * 299.99288 * 21 19 17 25 25 C 1.48186 * 111.07365 * 90.99397 * 13 11 10 26 26 C 1.33355 * 117.94705 * 108.74067 * 7 6 5 27 27 O 1.21277 * 118.24427 * 357.77051 * 26 7 6 28 28 C 1.39103 * 120.16018 * 0.25963 * 6 5 4 29 29 C 1.37695 * 120.08116 * 359.48775 * 28 6 5 30 30 H 1.08000 * 120.03863 * 359.95198 * 4 3 2 31 31 H 1.08000 * 119.96298 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.30075 * 319.38823 * 8 7 6 33 33 H 1.08999 * 109.30039 * 78.96755 * 8 7 6 34 34 H 1.09002 * 109.60433 * 69.00109 * 9 8 7 35 35 H 1.09001 * 109.60407 * 189.32637 * 9 8 7 36 36 H 1.09002 * 109.65554 * 307.79741 * 10 9 8 37 37 H 1.09005 * 109.68297 * 187.27703 * 10 9 8 38 38 H 1.09005 * 113.76322 * 108.10193 * 14 13 11 39 39 H 1.09002 * 113.85952 * 336.74309 * 14 13 11 40 40 H 0.96703 * 113.99614 * 174.33772 * 16 15 14 41 41 H 0.97002 * 120.00177 * 354.92436 * 20 19 17 42 42 H 1.08998 * 113.75554 * 23.23866 * 25 13 11 43 43 H 1.09001 * 113.82362 * 251.81816 * 25 13 11 44 44 H 1.08001 * 119.95456 * 179.71638 * 28 6 5 45 45 H 1.08003 * 120.04063 * 180.25656 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2684 0.3162 1.1676 5 6 4.6454 0.3153 1.1641 6 6 5.3393 0.0003 0.0004 7 7 6.7347 0.0010 0.0005 8 6 7.4173 1.2863 0.0813 9 6 8.8641 1.1550 -0.3960 10 6 9.5189 -0.0203 0.3398 11 6 8.8542 -1.3165 -0.1302 12 1 9.1590 -1.5272 -1.1553 13 7 9.2727 -2.4231 0.7406 14 6 8.8564 -3.7268 0.1783 15 6 8.4565 -4.1031 1.6165 16 8 9.5030 -4.7328 2.3583 17 6 7.1455 -4.8404 1.7083 18 1 6.7200 -5.2971 0.8270 19 6 6.4894 -4.9321 2.9175 20 7 5.5222 -5.8090 3.0760 21 14 6.9743 -3.8109 4.3306 22 1 6.1233 -4.1061 5.5112 23 1 6.7850 -2.3946 3.9262 24 1 8.3998 -4.0402 4.6777 25 6 8.3363 -2.5906 1.8768 26 6 7.3602 -1.1745 -0.0731 27 8 6.6866 -2.1827 -0.0946 28 6 4.6456 -0.3095 -1.1648 29 6 3.2687 -0.3156 -1.1673 30 1 2.7303 0.5607 2.0715 31 1 5.1872 0.5594 2.0659 32 1 6.8960 2.0110 -0.5440 33 1 7.4121 1.6325 1.1148 34 1 8.8794 0.9687 -1.4699 35 1 9.4065 2.0747 -0.1766 36 1 9.3780 0.0957 1.4144 37 1 10.5840 -0.0497 0.1100 38 1 9.6822 -4.3186 -0.2169 39 1 8.0130 -3.6614 -0.5091 40 1 9.2856 -4.8925 3.2869 41 1 5.2204 -6.3398 2.3222 42 1 7.3403 -2.1903 1.6876 43 1 8.7472 -2.2760 2.8361 44 1 5.1877 -0.5490 -2.0677 45 1 2.7307 -0.5603 -2.0713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365295715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:10 Heat of formation + Delta-G solvation = 48.798822 kcal Electronic energy + Delta-G solvation = -30848.818764 eV Core-core repulsion = 26834.022495 eV Total energy + Delta-G solvation = -4014.796269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61246 -39.69153 -38.25957 -36.61164 -36.40873 -34.90421 -33.24604 -32.34096 -31.34677 -30.26835 -29.65356 -26.84130 -25.51438 -24.90903 -24.11551 -23.01687 -22.14325 -21.78016 -19.17473 -19.05032 -18.84945 -17.81875 -17.44334 -16.60436 -16.27809 -15.64792 -15.27963 -15.07822 -14.76958 -14.66535 -14.39728 -14.10717 -14.03849 -13.74753 -13.63934 -13.40125 -13.27972 -13.25469 -12.87007 -12.50131 -12.38402 -12.17991 -12.12740 -11.81975 -11.58929 -11.43698 -11.30653 -11.11318 -10.81352 -10.62276 -10.55192 -10.26108 -9.88259 -9.56536 -9.31548 -9.23149 -9.18273 -8.77173 -8.61172 -8.25849 -7.88613 -6.46660 -4.14000 0.52464 1.16689 2.53388 2.64058 2.75680 2.83488 3.21737 3.30468 3.47884 3.65611 3.77022 4.30214 4.37155 4.53553 4.55803 4.66314 4.67601 4.73024 4.84579 5.05197 5.09141 5.17532 5.18173 5.27099 5.32143 5.39774 5.54484 5.57942 5.64798 5.74378 5.78525 5.84518 5.88252 6.00426 6.08603 6.11278 6.22998 6.27671 6.36107 6.41923 6.61215 6.77629 6.87656 7.11089 7.30833 7.34662 7.65834 7.88332 8.24397 8.35512 8.86461 8.98045 9.57245 10.88854 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009595 B = 0.005181 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.630108 B = 5402.613290 C = 7286.283453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.260 3.740 3 C -0.035 4.035 4 C -0.057 4.057 5 C -0.118 4.118 6 C 0.176 3.824 7 N -0.574 5.574 8 C 0.115 3.885 9 C -0.133 4.133 10 C -0.109 4.109 11 C 0.038 3.962 12 H 0.105 0.895 13 N -0.454 5.454 14 C 0.021 3.979 15 C 0.210 3.790 16 O -0.568 6.568 17 C -0.591 4.591 18 H 0.064 0.936 19 C 0.031 3.969 20 N -0.899 5.899 21 Si 1.045 2.955 22 H -0.284 1.284 23 H -0.281 1.281 24 H -0.281 1.281 25 C -0.052 4.052 26 C 0.488 3.512 27 O -0.487 6.487 28 C -0.106 4.106 29 C -0.058 4.058 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.361 0.639 41 H 0.270 0.730 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.132 0.868 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.066 19.566 -7.350 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.055 4.055 3 C -0.039 4.039 4 C -0.078 4.078 5 C -0.137 4.137 6 C 0.085 3.915 7 N -0.307 5.307 8 C -0.007 4.007 9 C -0.172 4.172 10 C -0.147 4.147 11 C -0.074 4.074 12 H 0.123 0.877 13 N -0.176 5.176 14 C -0.107 4.107 15 C 0.169 3.831 16 O -0.376 6.376 17 C -0.629 4.629 18 H 0.082 0.918 19 C -0.174 4.174 20 N -0.533 5.533 21 Si 0.874 3.126 22 H -0.210 1.210 23 H -0.207 1.207 24 H -0.209 1.209 25 C -0.181 4.181 26 C 0.276 3.724 27 O -0.359 6.359 28 C -0.126 4.126 29 C -0.079 4.079 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.210 0.790 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.081 0.919 44 H 0.150 0.850 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.706 19.480 -6.242 20.634 hybrid contribution -0.400 -0.327 -1.238 1.341 sum 2.307 19.153 -7.480 20.691 Atomic orbital electron populations 1.81240 1.12064 1.09036 1.07470 1.25679 0.92616 0.93518 0.93695 1.16033 0.84311 1.07581 0.95954 1.21018 0.93617 0.96507 0.96668 1.21200 0.93789 1.01203 0.97528 1.17828 0.83617 0.97055 0.93024 1.45274 1.03488 1.07368 1.74551 1.21491 0.93393 0.83947 1.01887 1.21890 0.94184 0.99947 1.01133 1.21601 1.00606 0.91557 1.00945 1.22309 0.88133 0.96143 1.00840 0.87673 1.68927 1.42530 1.00611 1.05529 1.24188 0.99484 0.88684 0.98382 1.20172 0.87397 0.86954 0.88542 1.86357 1.43635 1.82138 1.25450 1.22164 1.04887 1.37863 0.98024 0.91778 1.25698 0.95282 0.96499 0.99969 1.70800 1.29573 1.19569 1.33377 0.84079 0.75798 0.76420 0.76279 1.20989 1.20691 1.20861 1.25565 0.95814 1.02852 0.93819 1.21479 0.92233 0.82488 0.76214 1.90933 1.65691 1.33830 1.45451 1.21129 0.93601 0.99927 0.97926 1.20999 0.93626 0.96418 0.96900 0.84538 0.84703 0.90437 0.91450 0.90851 0.89377 0.90901 0.89943 0.90962 0.88479 0.79013 0.91954 0.88690 0.91940 0.84994 0.84678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.21 18.54 41.84 0.78 -5.44 16 2 C 0.26 3.30 15.33 -22.47 -0.34 2.95 16 3 C -0.04 -0.40 5.74 -106.82 -0.61 -1.01 16 4 C -0.06 -0.62 9.75 -39.21 -0.38 -1.00 16 5 C -0.12 -1.38 9.84 -39.46 -0.39 -1.77 16 6 C 0.18 2.22 4.32 -83.71 -0.36 1.86 16 7 N -0.57 -7.10 2.85 -114.63 -0.33 -7.43 16 8 C 0.11 0.93 6.26 -4.49 -0.03 0.91 16 9 C -0.13 -0.97 6.02 -26.60 -0.16 -1.13 16 10 C -0.11 -1.17 5.62 -26.52 -0.15 -1.32 16 11 C 0.04 0.56 2.51 -69.08 -0.17 0.39 16 12 H 0.11 1.41 8.08 -51.93 -0.42 0.99 16 13 N -0.45 -8.69 6.15 -231.68 -1.43 -10.11 16 14 C 0.02 0.45 6.92 -2.76 -0.02 0.43 16 15 C 0.21 5.20 1.06 -90.84 -0.10 5.11 16 16 O -0.57 -14.19 13.47 -35.23 -0.47 -14.66 16 17 C -0.59 -16.89 9.03 -34.44 -0.31 -17.20 16 18 H 0.06 2.01 8.06 -52.49 -0.42 1.59 16 19 C 0.03 0.91 5.43 -17.82 -0.10 0.81 16 20 N -0.90 -27.65 13.70 55.43 0.76 -26.89 16 21 Si 1.04 24.90 24.52 -169.99 -4.17 20.73 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 24 H -0.28 -6.10 5.85 56.52 0.33 -5.77 16 25 C -0.05 -1.14 4.21 -2.63 -0.01 -1.15 16 26 C 0.49 7.81 5.29 -11.87 -0.06 7.75 16 27 O -0.49 -10.09 11.61 5.56 0.06 -10.03 16 28 C -0.11 -1.24 9.43 -39.46 -0.37 -1.61 16 29 C -0.06 -0.62 9.75 -39.21 -0.38 -1.01 16 30 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 32 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 39 H 0.10 2.18 5.82 -51.93 -0.30 1.88 16 40 H 0.36 8.53 6.14 45.56 0.28 8.81 16 41 H 0.27 8.36 8.73 -40.82 -0.36 8.01 16 42 H 0.10 2.20 4.48 -51.93 -0.23 1.97 16 43 H 0.06 1.34 6.88 -51.93 -0.36 0.98 16 44 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.14 1.16 8.06 -52.48 -0.42 0.73 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -34.90 364.13 -8.62 -43.51 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -5.36 Total: 11.83 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -3.95 Total: -7.00 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.22 Total: -49.87 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.41 Total: -24.69 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -4.17 Total: 20.73 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.90 -8.62 -43.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365295715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.313 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds