Wall clock time and date at job start Sat Apr 11 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00228 * 2 1 4 4 H 1.48493 * 109.47226 * 240.00040 * 3 2 1 5 5 H 1.48498 * 109.46842 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47035 * 119.99734 * 3 2 1 7 7 C 1.37881 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99776 * 186.38582 * 7 2 1 9 9 C 1.50697 * 120.00018 * 6.39250 * 7 2 1 10 10 H 1.09002 * 109.47106 * 333.94098 * 9 7 2 11 11 C 1.50704 * 109.47175 * 213.94490 * 9 7 2 12 12 O 1.21276 * 119.99923 * 240.00122 * 11 9 7 13 13 N 1.34777 * 120.00168 * 59.99792 * 11 9 7 14 14 C 1.46499 * 120.00103 * 180.02562 * 13 11 9 15 15 C 1.50696 * 109.46849 * 179.97438 * 14 13 11 16 16 C 1.34971 * 126.68382 * 95.02488 * 15 14 13 17 17 N 1.34394 * 108.10275 * 179.97438 * 16 15 14 18 18 C 1.29774 * 109.18560 * 359.95807 * 17 16 15 19 19 N 1.35742 * 108.60727 * 359.82675 * 18 17 16 20 20 C 1.46536 * 123.52419 * 179.47140 * 19 18 17 21 21 C 1.53469 * 108.17673 * 344.25832 * 20 19 18 22 22 O 1.43027 * 109.67151 * 48.04638 * 21 20 19 23 23 C 1.43453 * 114.07055 * 289.88267 * 22 21 20 24 24 C 1.50703 * 109.47409 * 93.94236 * 9 7 2 25 25 C 1.38239 * 119.99555 * 53.84683 * 24 9 7 26 26 C 1.38237 * 119.99547 * 179.81009 * 25 24 9 27 27 C 1.38242 * 120.00006 * 0.39804 * 26 25 24 28 28 C 1.38229 * 119.99667 * 359.85687 * 27 26 25 29 29 C 1.38231 * 120.00130 * 234.12056 * 24 9 7 30 30 H 0.96999 * 120.00418 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99636 * 0.02562 * 13 11 9 32 32 H 1.08998 * 109.46953 * 299.99759 * 14 13 11 33 33 H 1.09002 * 109.47161 * 59.99734 * 14 13 11 34 34 H 1.08007 * 125.94348 * 359.97097 * 16 15 14 35 35 H 1.09003 * 109.89582 * 224.46585 * 20 19 18 36 36 H 1.09006 * 109.54740 * 103.84194 * 20 19 18 37 37 H 1.09006 * 109.43456 * 287.98798 * 21 20 19 38 38 H 1.08998 * 109.40581 * 168.09517 * 21 20 19 39 39 H 1.09002 * 109.79488 * 290.05173 * 23 22 21 40 40 H 1.09002 * 109.84371 * 169.21969 * 23 22 21 41 41 H 1.08000 * 120.00298 * 0.02562 * 25 24 9 42 42 H 1.08001 * 119.99936 * 180.23422 * 26 25 24 43 43 H 1.08002 * 119.99779 * 179.83342 * 27 26 25 44 44 H 1.08007 * 119.99467 * 179.97438 * 28 27 26 45 45 H 1.08007 * 120.00122 * 359.97438 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1971 0.1035 9 6 1.2580 -2.4950 -0.1464 10 1 0.2374 -2.3709 0.2159 11 6 1.9502 -3.5645 0.6587 12 8 2.3788 -4.5563 0.1079 13 7 2.0931 -3.4187 1.9910 14 6 2.7665 -4.4580 2.7736 15 6 2.7947 -4.0546 4.2252 16 6 1.9103 -4.4140 5.1794 17 7 2.2904 -3.8458 6.3364 18 6 3.3698 -3.1535 6.1373 19 7 3.7193 -3.2626 4.8301 20 6 4.8876 -2.5979 4.2466 21 6 5.3546 -1.5080 5.2209 22 8 5.4373 -2.0474 6.5430 23 6 4.1645 -2.3441 7.1345 24 6 1.2301 -2.8982 -1.5983 25 6 2.4100 -2.9907 -2.3126 26 6 2.3848 -3.3643 -3.6433 27 6 1.1790 -3.6375 -4.2618 28 6 -0.0012 -3.5399 -3.5488 29 6 0.0243 -3.1701 -2.2171 30 1 -0.4851 0.8400 0.0004 31 1 1.7500 -2.6255 2.4316 32 1 2.2269 -5.3992 2.6681 33 1 3.7871 -4.5817 2.4112 34 1 1.0473 -5.0478 5.0375 35 1 4.6191 -2.1471 3.2912 36 1 5.6854 -3.3258 4.0987 37 1 4.6430 -0.6824 5.2098 38 1 6.3359 -1.1451 4.9151 39 1 3.6377 -1.4171 7.3612 40 1 4.3067 -2.9208 8.0485 41 1 3.3517 -2.7744 -1.8302 42 1 3.3069 -3.4403 -4.2004 43 1 1.1591 -3.9268 -5.3021 44 1 -0.9433 -3.7529 -4.0321 45 1 -0.8979 -3.0939 -1.6600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433571614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:49 Heat of formation + Delta-G solvation = 6.039767 kcal Electronic energy + Delta-G solvation = -29454.106414 eV Core-core repulsion = 25437.455973 eV Total energy + Delta-G solvation = -4016.650441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.52240 -39.20877 -38.52224 -37.77158 -34.69518 -33.90047 -33.71916 -31.20491 -30.77093 -30.02220 -29.98781 -27.94201 -26.74313 -24.77205 -23.94104 -23.63067 -21.65455 -21.13386 -20.79531 -19.50786 -19.31716 -17.71466 -16.94671 -16.64361 -16.27601 -15.92214 -15.76512 -15.50570 -15.31554 -14.87768 -14.61760 -14.58811 -14.14446 -13.92262 -13.76099 -13.48517 -13.13897 -12.85931 -12.63850 -12.47221 -12.37174 -12.29378 -12.08622 -11.71234 -11.57370 -11.50406 -11.13250 -11.11234 -10.48780 -10.46282 -10.34558 -10.09177 -10.03243 -9.67019 -9.54244 -8.92558 -8.75543 -8.48708 -8.29411 -7.99641 -7.66836 -6.36067 -4.41894 1.79924 2.32420 2.35498 2.47187 2.97565 3.10787 3.19246 3.20193 3.35892 3.61643 3.95637 4.07685 4.19500 4.22455 4.49233 4.64055 4.77924 4.88774 5.01297 5.01939 5.10806 5.17614 5.28052 5.29778 5.40007 5.67926 5.68622 5.75013 5.76596 5.85577 6.14462 6.25987 6.30448 6.44289 6.44696 6.54199 6.70003 6.81507 6.91901 6.98471 7.03195 7.13938 7.32163 7.39054 7.52869 7.69088 7.89576 7.95608 8.00299 8.26210 8.61153 9.12450 9.23807 10.72556 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011899 B = 0.003495 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.599392 B = 8009.716074 C = 9206.973564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.076 3.924 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.517 4.517 8 H 0.060 0.940 9 C 0.050 3.950 10 H 0.093 0.907 11 C 0.529 3.471 12 O -0.566 6.566 13 N -0.728 5.728 14 C 0.199 3.801 15 C -0.020 4.020 16 C -0.011 4.011 17 N -0.475 5.475 18 C 0.163 3.837 19 N -0.444 5.444 20 C 0.066 3.934 21 C 0.048 3.952 22 O -0.374 6.374 23 C 0.151 3.849 24 C -0.012 4.012 25 C -0.085 4.085 26 C -0.135 4.135 27 C -0.148 4.148 28 C -0.131 4.131 29 C -0.120 4.120 30 H 0.269 0.731 31 H 0.407 0.593 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.175 0.825 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.121 0.879 39 H 0.084 0.916 40 H 0.124 0.876 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.782 -2.864 7.979 10.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.129 4.129 3 Si 0.724 3.276 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.078 0.922 9 C 0.029 3.971 10 H 0.111 0.889 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.382 5.382 14 C 0.073 3.927 15 C -0.135 4.135 16 C -0.160 4.160 17 N -0.195 5.195 18 C -0.100 4.100 19 N -0.127 5.127 20 C -0.056 4.056 21 C -0.029 4.029 22 O -0.291 6.291 23 C 0.073 3.927 24 C -0.013 4.013 25 C -0.103 4.103 26 C -0.153 4.153 27 C -0.166 4.166 28 C -0.150 4.150 29 C -0.138 4.138 30 H 0.078 0.922 31 H 0.242 0.758 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.192 0.808 35 H 0.127 0.873 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.139 0.861 39 H 0.102 0.898 40 H 0.142 0.858 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.839 -3.496 8.337 11.336 hybrid contribution 0.374 1.452 -0.933 1.766 sum 7.213 -2.044 7.404 10.536 Atomic orbital electron populations 1.69858 1.06007 1.27674 1.47676 1.24953 0.94887 0.99411 0.93682 0.86578 0.79684 0.82534 0.78842 1.19832 1.21008 1.20176 1.20582 0.93243 0.88680 1.52930 0.92201 1.18124 0.99833 0.91628 0.87528 0.88933 1.21685 0.77914 0.87204 0.81258 1.90593 1.50929 1.32117 1.70837 1.46052 1.60944 1.23179 1.08019 1.19414 0.98586 0.92378 0.82274 1.21169 0.93893 1.01711 0.96736 1.22279 1.01194 1.04801 0.87747 1.69886 1.10741 1.11446 1.27405 1.23891 0.96826 1.04212 0.85055 1.45099 1.21378 1.37098 1.09159 1.22770 0.86812 0.96810 0.99244 1.23008 1.04023 0.94163 0.81722 1.88133 1.27948 1.83592 1.29393 1.21204 0.81683 0.97088 0.92705 1.20042 0.92122 0.92044 0.97108 1.20810 0.98259 0.97950 0.93255 1.20963 0.97067 1.01834 0.95412 1.20809 0.93044 1.03865 0.98907 1.20911 0.97265 1.01928 0.94853 1.21010 0.97841 1.00246 0.94708 0.92151 0.75794 0.89583 0.91593 0.80788 0.87291 0.88839 0.91197 0.86147 0.89814 0.85789 0.87187 0.87580 0.87666 0.87495 0.86938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.59 12.78 55.43 0.71 -21.88 16 2 C 0.08 1.87 5.45 -17.82 -0.10 1.77 16 3 Si 0.90 19.30 29.54 -169.99 -5.02 14.28 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.52 -12.36 7.46 -34.44 -0.26 -12.62 16 8 H 0.06 1.43 7.82 -52.49 -0.41 1.02 16 9 C 0.05 1.15 2.44 -94.07 -0.23 0.92 16 10 H 0.09 2.28 7.00 -51.93 -0.36 1.92 16 11 C 0.53 11.22 7.04 -10.98 -0.08 11.15 16 12 O -0.57 -13.14 15.42 5.56 0.09 -13.05 16 13 N -0.73 -12.86 5.45 -61.47 -0.33 -13.20 16 14 C 0.20 2.97 6.03 -5.20 -0.03 2.94 16 15 C -0.02 -0.28 6.37 -81.93 -0.52 -0.80 16 16 C -0.01 -0.16 11.81 -17.59 -0.21 -0.37 16 17 N -0.48 -7.18 11.24 -10.56 -0.12 -7.30 16 18 C 0.16 2.18 7.79 -155.21 -1.21 0.97 16 19 N -0.44 -5.85 3.14 -109.08 -0.34 -6.20 16 20 C 0.07 0.70 7.14 -3.78 -0.03 0.67 16 21 C 0.05 0.42 6.82 37.40 0.26 0.68 16 22 O -0.37 -3.81 10.78 -35.23 -0.38 -4.19 16 23 C 0.15 1.50 7.29 36.17 0.26 1.76 16 24 C -0.01 -0.28 4.30 -104.62 -0.45 -0.73 16 25 C -0.08 -1.85 8.31 -39.58 -0.33 -2.18 16 26 C -0.13 -2.60 10.05 -39.58 -0.40 -2.99 16 27 C -0.15 -2.70 10.05 -39.58 -0.40 -3.10 16 28 C -0.13 -2.49 10.05 -39.59 -0.40 -2.89 16 29 C -0.12 -2.57 9.67 -39.59 -0.38 -2.95 16 30 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.41 7.27 8.35 -40.82 -0.34 6.93 16 32 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.17 2.17 8.06 -52.48 -0.42 1.75 16 35 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 38 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.11 2.41 7.89 -52.49 -0.41 2.00 16 42 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 45 H 0.11 2.32 7.96 -52.48 -0.42 1.91 16 LS Contribution 382.40 15.07 5.76 5.76 Total: -1.00 -30.23 382.40 -10.29 -40.52 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -6.15 Total: 13.03 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -4.49 Total: -7.77 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.09 Total: -48.57 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.29 Total: -17.25 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.23 -10.29 -40.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433571614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.557 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds