Wall clock time and date at job start Sat Apr 11 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00475 * 2 1 4 4 H 1.48500 * 109.47234 * 270.00365 * 3 2 1 5 5 H 1.48501 * 109.46881 * 30.00097 * 3 2 1 6 6 H 1.48499 * 109.47333 * 149.99641 * 3 2 1 7 7 C 1.37878 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00357 * 0.02562 * 7 2 1 10 10 O 1.42901 * 110.88870 * 62.42776 * 9 7 2 11 11 C 1.55156 * 111.03980 * 186.33454 * 9 7 2 12 12 C 1.54340 * 103.02295 * 153.39341 * 11 9 7 13 13 N 1.47025 * 107.26470 * 338.14137 * 12 11 9 14 14 C 1.34772 * 125.65083 * 178.84901 * 13 12 11 15 15 O 1.21579 * 120.00262 * 179.68679 * 14 13 12 16 16 N 1.34777 * 119.99764 * 359.69394 * 14 13 12 17 17 C 1.39944 * 120.00346 * 184.62856 * 16 14 13 18 18 C 1.38930 * 120.03213 * 324.64163 * 17 16 14 19 19 C 1.38143 * 120.06022 * 180.25432 * 18 17 16 20 20 C 1.38185 * 120.13357 * 0.03729 * 19 18 17 21 21 C 1.38856 * 120.07599 * 359.95836 * 20 19 18 22 22 N 1.40199 * 120.03343 * 180.02562 * 21 20 19 23 23 C 1.36576 * 125.66999 * 179.66778 * 22 21 20 24 24 C 1.34848 * 108.19801 * 179.89130 * 23 22 21 25 25 C 1.40943 * 107.47178 * 0.37299 * 24 23 22 26 26 C 1.34856 * 107.46640 * 359.76493 * 25 24 23 27 27 C 1.38728 * 119.93850 * 0.02562 * 21 20 19 28 28 C 1.47426 * 108.69894 * 358.58090 * 13 12 11 29 29 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 30 30 H 0.96700 * 113.99684 * 297.57594 * 10 9 7 31 31 H 1.08997 * 110.71855 * 271.95083 * 11 9 7 32 32 H 1.08997 * 110.72239 * 35.22263 * 11 9 7 33 33 H 1.08995 * 109.99152 * 218.66090 * 12 11 9 34 34 H 1.08998 * 109.77941 * 97.49323 * 12 11 9 35 35 H 0.97003 * 120.00008 * 4.62115 * 16 14 13 36 36 H 1.07996 * 119.97202 * 0.26918 * 18 17 16 37 37 H 1.07996 * 119.93087 * 180.02562 * 19 18 17 38 38 H 1.08002 * 119.96182 * 179.97438 * 20 19 18 39 39 H 1.07994 * 125.89646 * 0.02562 * 23 22 21 40 40 H 1.07994 * 126.26518 * 180.14036 * 24 23 22 41 41 H 1.07994 * 126.26774 * 179.77287 * 25 24 23 42 42 H 1.07992 * 125.89769 * 179.97438 * 26 25 24 43 43 H 1.07995 * 120.06991 * 180.02562 * 27 21 20 44 44 H 1.09007 * 110.36412 * 143.20107 * 28 13 12 45 45 H 1.08998 * 110.37282 * 265.40818 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 8 0.4614 -2.6307 -1.1856 11 6 2.2188 -3.7013 0.1576 12 6 1.3283 -4.7809 0.8085 13 7 0.2051 -4.0877 1.4562 14 6 -0.8083 -4.6814 2.1172 15 8 -1.6844 -4.0054 2.6207 16 7 -0.8503 -6.0246 2.2203 17 6 -1.9506 -6.6462 2.8216 18 6 -2.5904 -6.0403 3.8956 19 6 -3.6732 -6.6559 4.4930 20 6 -4.1228 -7.8758 4.0250 21 6 -3.4876 -8.4864 2.9517 22 7 -3.9448 -9.7239 2.4773 23 6 -3.4131 -10.4212 1.4303 24 6 -4.1199 -11.5598 1.2802 25 6 -5.1298 -11.5636 2.2634 26 6 -4.9998 -10.4296 2.9815 27 6 -2.4001 -7.8708 2.3494 28 6 0.3743 -2.6353 1.2683 29 1 -0.4850 0.8401 0.0004 30 1 -0.2245 -1.9553 -1.2779 31 1 2.5840 -4.0338 -0.8140 32 1 3.0490 -3.4435 0.8152 33 1 1.8995 -5.3365 1.5521 34 1 0.9529 -5.4601 0.0430 35 1 -0.1180 -6.5605 1.8776 36 1 -2.2410 -5.0870 4.2638 37 1 -4.1693 -6.1828 5.3275 38 1 -4.9694 -8.3548 4.4943 39 1 -2.5706 -10.1148 0.8281 40 1 -3.9464 -12.3264 0.5396 41 1 -5.8717 -12.3337 2.4141 42 1 -5.6226 -10.1309 3.8116 43 1 -1.9047 -8.3436 1.5143 44 1 -0.5932 -2.1574 1.1144 45 1 0.8800 -2.1978 2.1290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464884607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:58 Heat of formation + Delta-G solvation = 18.107951 kcal Electronic energy + Delta-G solvation = -28821.737328 eV Core-core repulsion = 24805.610203 eV Total energy + Delta-G solvation = -4016.127125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.77797 -40.41431 -38.79377 -37.39667 -34.75134 -34.37914 -32.97955 -32.29195 -30.76693 -29.90536 -28.95258 -28.49811 -27.79801 -25.23376 -23.49147 -23.16367 -22.39950 -20.60080 -20.18431 -19.74519 -19.52915 -18.63517 -17.80629 -17.14290 -16.35181 -16.13092 -15.58921 -15.16296 -15.12882 -15.09414 -14.60046 -14.45068 -14.15945 -13.90110 -13.69395 -13.37366 -13.12430 -12.92027 -12.72020 -12.53205 -12.37640 -12.23096 -11.93938 -11.72247 -11.61748 -11.51836 -11.08802 -10.93480 -10.70504 -10.52425 -10.50987 -10.26540 -9.90793 -9.62952 -9.45174 -8.76364 -8.57251 -8.44985 -8.42650 -8.05477 -7.80114 -6.33333 -4.43432 0.84773 1.12735 2.32678 2.55026 2.80525 2.89426 3.17688 3.25493 3.27338 3.37789 3.77066 4.13738 4.24083 4.55024 4.69233 4.84223 4.92266 4.93500 5.04978 5.19612 5.26863 5.28767 5.34623 5.45896 5.51095 5.60656 5.66420 5.82914 5.88508 5.94992 6.01949 6.12922 6.22328 6.25257 6.40072 6.42806 6.60653 6.71643 6.76450 6.79102 6.87897 7.02399 7.09057 7.21510 7.26980 7.41238 7.68396 7.95621 8.24032 8.60383 8.81861 9.23357 9.31947 10.73743 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023908 B = 0.002238 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.867287 B =12508.292473 C =13088.571065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.115 4.115 12 C 0.100 3.900 13 N -0.621 5.621 14 C 0.715 3.285 15 O -0.576 6.576 16 N -0.690 5.690 17 C 0.208 3.792 18 C -0.131 4.131 19 C -0.072 4.072 20 C -0.163 4.163 21 C 0.153 3.847 22 N -0.393 5.393 23 C -0.014 4.014 24 C -0.194 4.194 25 C -0.195 4.195 26 C -0.014 4.014 27 C -0.174 4.174 28 C 0.112 3.888 29 H 0.271 0.729 30 H 0.382 0.618 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.406 0.594 36 H 0.149 0.851 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.164 0.836 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.164 0.836 43 H 0.131 0.869 44 H 0.088 0.912 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.941 -18.449 6.330 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.153 4.153 12 C -0.023 4.023 13 N -0.356 5.356 14 C 0.418 3.582 15 O -0.454 6.454 16 N -0.338 5.338 17 C 0.111 3.889 18 C -0.152 4.152 19 C -0.092 4.092 20 C -0.184 4.184 21 C 0.061 3.939 22 N -0.064 5.064 23 C -0.141 4.141 24 C -0.218 4.218 25 C -0.219 4.219 26 C -0.141 4.141 27 C -0.197 4.197 28 C -0.010 4.010 29 H 0.081 0.919 30 H 0.232 0.768 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.241 0.759 36 H 0.167 0.833 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.181 0.819 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.181 0.819 43 H 0.149 0.851 44 H 0.106 0.894 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.231 -18.024 6.681 19.921 hybrid contribution 0.414 1.034 -0.180 1.128 sum -4.818 -16.989 6.501 18.818 Atomic orbital electron populations 1.69710 1.05993 1.28016 1.49271 1.25087 0.95055 0.99822 0.93280 0.86393 0.79753 0.82375 0.78334 1.20368 1.20989 1.19689 1.21434 0.93646 0.89928 1.52682 0.91458 1.19634 0.86594 0.91642 0.81324 1.86107 1.51582 1.57203 1.44227 1.22596 0.97520 0.95006 1.00196 1.22032 0.88241 0.96328 0.95727 1.48012 1.22830 1.10196 1.54601 1.15470 0.82255 0.80694 0.79829 1.90895 1.39133 1.62663 1.52670 1.42741 1.21536 1.06400 1.63082 1.17209 0.88702 0.91469 0.91553 1.21503 0.97355 1.01790 0.94552 1.20905 0.95578 0.93564 0.99115 1.20720 1.02299 0.97370 0.97961 1.17479 0.95414 0.85133 0.95887 1.41644 1.24779 1.14583 1.25371 1.21926 1.03100 0.94680 0.94382 1.20976 0.99148 0.98852 1.02847 1.20973 1.02529 0.98950 0.99416 1.21894 0.94182 0.94624 1.03403 1.20385 0.98800 0.97709 1.02819 1.23259 1.02860 0.74965 0.99875 0.91919 0.76830 0.90582 0.90262 0.92809 0.92376 0.75884 0.83342 0.84825 0.85452 0.81909 0.84292 0.84310 0.81860 0.85128 0.89393 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.25 10.69 55.43 0.59 -22.66 16 2 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 3 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.54 -13.52 8.27 -34.44 -0.28 -13.80 16 8 H 0.07 1.65 7.79 -52.48 -0.41 1.25 16 9 C 0.25 5.75 0.87 -89.62 -0.08 5.68 16 10 O -0.58 -14.35 13.16 -35.23 -0.46 -14.82 16 11 C -0.12 -2.14 6.13 -24.89 -0.15 -2.29 16 12 C 0.10 1.61 6.16 -3.05 -0.02 1.59 16 13 N -0.62 -12.07 3.33 -176.23 -0.59 -12.66 16 14 C 0.71 13.69 8.33 -86.92 -0.72 12.96 16 15 O -0.58 -12.93 14.04 5.30 0.07 -12.85 16 16 N -0.69 -10.10 5.29 -14.24 -0.08 -10.18 16 17 C 0.21 2.93 6.29 -83.72 -0.53 2.41 16 18 C -0.13 -1.88 8.70 -39.36 -0.34 -2.22 16 19 C -0.07 -0.83 10.03 -39.64 -0.40 -1.23 16 20 C -0.16 -1.78 9.45 -39.37 -0.37 -2.15 16 21 C 0.15 1.83 6.62 -83.62 -0.55 1.28 16 22 N -0.39 -4.47 2.97 -60.95 -0.18 -4.65 16 23 C -0.01 -0.15 10.74 -16.64 -0.18 -0.33 16 24 C -0.19 -1.95 10.86 -39.76 -0.43 -2.38 16 25 C -0.19 -1.90 10.86 -39.76 -0.43 -2.33 16 26 C -0.01 -0.14 10.74 -16.64 -0.18 -0.32 16 27 C -0.17 -2.13 9.37 -39.22 -0.37 -2.50 16 28 C 0.11 2.57 5.38 -2.53 -0.01 2.56 16 29 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.38 9.73 7.57 45.56 0.34 10.07 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.41 4.73 7.82 -40.82 -0.32 4.41 16 36 H 0.15 2.42 6.22 -52.49 -0.33 2.09 16 37 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.13 1.08 6.70 -52.49 -0.35 0.73 16 39 H 0.16 1.40 7.01 -52.49 -0.37 1.03 16 40 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 42 H 0.16 1.23 7.00 -52.49 -0.37 0.86 16 43 H 0.13 1.36 6.70 -52.49 -0.35 1.01 16 44 H 0.09 2.31 7.33 -51.92 -0.38 1.92 16 45 H 0.06 1.45 8.03 -51.93 -0.42 1.03 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -29.98 371.52 -10.24 -40.23 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -5.03 Total: 18.48 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -5.15 Total: -1.36 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.25 Total: -50.15 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.39 Total: -27.67 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.98 -10.24 -40.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464884607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.335 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds