Wall clock time and date at job start Sat Apr 11 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00475 * 2 1 4 4 H 1.48500 * 109.47234 * 270.00365 * 3 2 1 5 5 H 1.48501 * 109.46881 * 30.00097 * 3 2 1 6 6 H 1.48499 * 109.47333 * 149.99641 * 3 2 1 7 7 C 1.37878 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00357 * 0.02562 * 7 2 1 10 10 O 1.42901 * 110.88870 * 62.42776 * 9 7 2 11 11 C 1.55156 * 111.03980 * 186.33454 * 9 7 2 12 12 C 1.54340 * 103.02295 * 153.39341 * 11 9 7 13 13 N 1.47025 * 107.26470 * 338.14137 * 12 11 9 14 14 C 1.34772 * 125.65083 * 178.84901 * 13 12 11 15 15 O 1.21579 * 120.00262 * 179.68679 * 14 13 12 16 16 N 1.34777 * 119.99764 * 359.69394 * 14 13 12 17 17 C 1.39944 * 120.00346 * 184.62856 * 16 14 13 18 18 C 1.38930 * 120.03213 * 324.64163 * 17 16 14 19 19 C 1.38143 * 120.06022 * 180.25432 * 18 17 16 20 20 C 1.38185 * 120.13357 * 0.03729 * 19 18 17 21 21 C 1.38856 * 120.07599 * 359.95836 * 20 19 18 22 22 N 1.40199 * 120.03343 * 180.02562 * 21 20 19 23 23 C 1.36576 * 125.66999 * 179.66778 * 22 21 20 24 24 C 1.34848 * 108.19801 * 179.89130 * 23 22 21 25 25 C 1.40943 * 107.47178 * 0.37299 * 24 23 22 26 26 C 1.34856 * 107.46640 * 359.76493 * 25 24 23 27 27 C 1.38728 * 119.93850 * 0.02562 * 21 20 19 28 28 C 1.47426 * 108.69894 * 358.58090 * 13 12 11 29 29 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 30 30 H 0.96700 * 113.99684 * 297.57594 * 10 9 7 31 31 H 1.08997 * 110.71855 * 271.95083 * 11 9 7 32 32 H 1.08997 * 110.72239 * 35.22263 * 11 9 7 33 33 H 1.08995 * 109.99152 * 218.66090 * 12 11 9 34 34 H 1.08998 * 109.77941 * 97.49323 * 12 11 9 35 35 H 0.97003 * 120.00008 * 4.62115 * 16 14 13 36 36 H 1.07996 * 119.97202 * 0.26918 * 18 17 16 37 37 H 1.07996 * 119.93087 * 180.02562 * 19 18 17 38 38 H 1.08002 * 119.96182 * 179.97438 * 20 19 18 39 39 H 1.07994 * 125.89646 * 0.02562 * 23 22 21 40 40 H 1.07994 * 126.26518 * 180.14036 * 24 23 22 41 41 H 1.07994 * 126.26774 * 179.77287 * 25 24 23 42 42 H 1.07992 * 125.89769 * 179.97438 * 26 25 24 43 43 H 1.07995 * 120.06991 * 180.02562 * 27 21 20 44 44 H 1.09007 * 110.36412 * 143.20107 * 28 13 12 45 45 H 1.08998 * 110.37282 * 265.40818 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 8 0.4614 -2.6307 -1.1856 11 6 2.2188 -3.7013 0.1576 12 6 1.3283 -4.7809 0.8085 13 7 0.2051 -4.0877 1.4562 14 6 -0.8083 -4.6814 2.1172 15 8 -1.6844 -4.0054 2.6207 16 7 -0.8503 -6.0246 2.2203 17 6 -1.9506 -6.6462 2.8216 18 6 -2.5904 -6.0403 3.8956 19 6 -3.6732 -6.6559 4.4930 20 6 -4.1228 -7.8758 4.0250 21 6 -3.4876 -8.4864 2.9517 22 7 -3.9448 -9.7239 2.4773 23 6 -3.4131 -10.4212 1.4303 24 6 -4.1199 -11.5598 1.2802 25 6 -5.1298 -11.5636 2.2634 26 6 -4.9998 -10.4296 2.9815 27 6 -2.4001 -7.8708 2.3494 28 6 0.3743 -2.6353 1.2683 29 1 -0.4850 0.8401 0.0004 30 1 -0.2245 -1.9553 -1.2779 31 1 2.5840 -4.0338 -0.8140 32 1 3.0490 -3.4435 0.8152 33 1 1.8995 -5.3365 1.5521 34 1 0.9529 -5.4601 0.0430 35 1 -0.1180 -6.5605 1.8776 36 1 -2.2410 -5.0870 4.2638 37 1 -4.1693 -6.1828 5.3275 38 1 -4.9694 -8.3548 4.4943 39 1 -2.5706 -10.1148 0.8281 40 1 -3.9464 -12.3264 0.5396 41 1 -5.8717 -12.3337 2.4141 42 1 -5.6226 -10.1309 3.8116 43 1 -1.9047 -8.3436 1.5143 44 1 -0.5932 -2.1574 1.1144 45 1 0.8800 -2.1978 2.1290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464884607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:57 Heat of formation + Delta-G solvation = 0.154467 kcal Electronic energy + Delta-G solvation = -28822.515850 eV Core-core repulsion = 24805.610203 eV Total energy + Delta-G solvation = -4016.905646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.57962 -41.73456 -40.02720 -38.87890 -36.15407 -35.94374 -34.24243 -33.87849 -32.12705 -31.07233 -29.75431 -29.64993 -29.26850 -27.01046 -24.74940 -24.20100 -23.52761 -21.67416 -21.51431 -20.95734 -20.58470 -19.64312 -19.26845 -18.89415 -17.48174 -17.25000 -16.96521 -16.92520 -16.40959 -16.10074 -15.99771 -15.81547 -15.11922 -15.04656 -14.83447 -14.66074 -14.58084 -14.30970 -13.92619 -13.67986 -13.51234 -13.33344 -13.24745 -13.13870 -12.85778 -12.82129 -12.54981 -12.46319 -12.33123 -12.24421 -12.10902 -11.65057 -11.28205 -11.20179 -10.67647 -10.66763 -10.34115 -9.70673 -9.34551 -9.18667 -8.88047 -8.25508 -6.42524 -0.07088 0.16537 1.35478 1.43104 1.44832 1.49945 1.53557 1.90991 2.00029 2.08021 2.37608 2.76443 2.86977 3.00902 3.70273 3.76161 3.88405 3.99981 4.06245 4.09589 4.14716 4.25651 4.28547 4.31966 4.40887 4.58426 4.60573 4.64200 4.73659 4.79843 4.99376 5.04410 5.07410 5.12544 5.23408 5.29123 5.32443 5.37072 5.39493 5.43603 5.45556 5.75025 5.82076 5.97172 5.99673 6.08670 6.26246 6.47760 6.64543 6.86063 7.25955 7.34165 7.36871 8.79572 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023908 B = 0.002238 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.867287 B =12508.292473 C =13088.571065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.963 3.037 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.231 3.769 10 O -0.588 6.588 11 C -0.110 4.110 12 C 0.101 3.899 13 N -0.626 5.626 14 C 0.712 3.288 15 O -0.618 6.618 16 N -0.671 5.671 17 C 0.185 3.815 18 C -0.155 4.155 19 C -0.069 4.069 20 C -0.155 4.155 21 C 0.149 3.851 22 N -0.402 5.402 23 C -0.034 4.034 24 C -0.202 4.202 25 C -0.203 4.203 26 C -0.026 4.026 27 C -0.170 4.170 28 C 0.128 3.872 29 H 0.269 0.731 30 H 0.373 0.627 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.421 0.579 36 H 0.121 0.879 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.177 0.823 40 H 0.155 0.845 41 H 0.158 0.842 42 H 0.187 0.813 43 H 0.148 0.852 44 H 0.046 0.954 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.653 -20.962 6.592 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.788 3.212 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.592 4.592 8 H 0.088 0.912 9 C 0.191 3.809 10 O -0.395 6.395 11 C -0.148 4.148 12 C -0.020 4.020 13 N -0.362 5.362 14 C 0.414 3.586 15 O -0.498 6.498 16 N -0.320 5.320 17 C 0.088 3.912 18 C -0.176 4.176 19 C -0.088 4.088 20 C -0.175 4.175 21 C 0.056 3.944 22 N -0.074 5.074 23 C -0.160 4.160 24 C -0.226 4.226 25 C -0.227 4.227 26 C -0.152 4.152 27 C -0.192 4.192 28 C 0.005 3.995 29 H 0.078 0.922 30 H 0.221 0.779 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.260 0.740 36 H 0.139 0.861 37 H 0.175 0.825 38 H 0.174 0.826 39 H 0.194 0.806 40 H 0.173 0.827 41 H 0.176 0.824 42 H 0.204 0.796 43 H 0.166 0.834 44 H 0.064 0.936 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.916 -20.624 6.933 22.306 hybrid contribution 0.234 1.694 -0.241 1.727 sum -4.682 -18.929 6.692 20.616 Atomic orbital electron populations 1.69838 1.07166 1.28376 1.50044 1.25826 0.95730 1.02845 0.93130 0.85475 0.78759 0.78712 0.78212 1.20149 1.21293 1.18836 1.21786 0.93984 0.91110 1.52367 0.91177 1.19883 0.87200 0.93254 0.80574 1.86098 1.51471 1.56794 1.45138 1.22598 0.97186 0.93598 1.01398 1.22230 0.87107 0.95640 0.97061 1.47906 1.24096 1.09006 1.55160 1.15612 0.81573 0.81952 0.79431 1.90868 1.40647 1.64101 1.54229 1.42386 1.22351 1.04631 1.62610 1.17357 0.89175 0.92411 0.92211 1.21441 0.99011 1.01331 0.95780 1.21138 0.94537 0.93722 0.99357 1.21042 1.02503 0.96743 0.97259 1.17663 0.95248 0.85531 0.95989 1.41757 1.25366 1.14453 1.25848 1.22323 1.03908 0.95074 0.94691 1.21328 0.99004 0.99052 1.03170 1.21339 1.02814 0.99388 0.99148 1.22403 0.94072 0.94654 1.04073 1.20476 0.98890 0.96789 1.03091 1.22739 1.00323 0.77115 0.99346 0.92207 0.77885 0.89508 0.89100 0.88696 0.90570 0.74035 0.86115 0.82503 0.82614 0.80575 0.82708 0.82428 0.79624 0.83411 0.93562 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.48 10.69 21.45 0.23 -49.26 16 2 C 0.03 1.33 5.29 84.66 0.45 1.77 16 3 Si 0.96 41.21 29.54 68.60 2.03 43.24 16 4 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.55 -28.08 8.27 25.60 0.21 -27.87 16 8 H 0.07 3.42 7.79 -2.91 -0.02 3.40 16 9 C 0.23 10.81 0.87 -10.15 -0.01 10.80 16 10 O -0.59 -29.50 13.16 -148.98 -1.96 -31.46 16 11 C -0.11 -3.91 6.13 31.79 0.19 -3.71 16 12 C 0.10 3.03 6.16 86.73 0.53 3.57 16 13 N -0.63 -24.43 3.33 -829.73 -2.76 -27.19 16 14 C 0.71 27.70 8.33 179.06 1.49 29.19 16 15 O -0.62 -29.09 14.04 -3.96 -0.06 -29.15 16 16 N -0.67 -19.22 5.29 -317.24 -1.68 -20.90 16 17 C 0.18 5.12 6.29 38.13 0.24 5.36 16 18 C -0.15 -4.48 8.70 22.41 0.19 -4.28 16 19 C -0.07 -1.50 10.03 22.23 0.22 -1.27 16 20 C -0.16 -3.02 9.45 22.41 0.21 -2.81 16 21 C 0.15 3.25 6.62 38.07 0.25 3.50 16 22 N -0.40 -8.21 2.97 -346.73 -1.03 -9.25 16 23 C -0.03 -0.65 10.74 83.18 0.89 0.25 16 24 C -0.20 -3.58 10.86 22.15 0.24 -3.34 16 25 C -0.20 -3.45 10.86 22.16 0.24 -3.21 16 26 C -0.03 -0.45 10.74 83.18 0.89 0.44 16 27 C -0.17 -3.90 9.37 22.51 0.21 -3.69 16 28 C 0.13 6.11 5.38 86.86 0.47 6.58 16 29 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 30 H 0.37 19.82 7.57 -74.06 -0.56 19.26 16 31 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.09 2.99 8.03 -2.39 -0.02 2.97 16 33 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.42 9.01 7.82 -92.71 -0.72 8.28 16 36 H 0.12 4.18 6.22 -2.91 -0.02 4.16 16 37 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.16 2.09 6.70 -2.91 -0.02 2.07 16 39 H 0.18 2.65 7.01 -2.91 -0.02 2.63 16 40 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 42 H 0.19 2.17 7.00 -2.91 -0.02 2.15 16 43 H 0.15 2.75 6.70 -2.91 -0.02 2.73 16 44 H 0.05 2.57 7.33 -2.38 -0.02 2.55 16 45 H 0.04 2.20 8.03 -2.39 -0.02 2.18 16 Total: -1.00 -67.68 371.52 1.47 -66.21 By element: Atomic # 1 Polarization: 46.70 SS G_CDS: -0.24 Total: 46.46 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 6.94 Total: 11.28 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -5.24 Total: -106.58 kcal Atomic # 8 Polarization: -58.59 SS G_CDS: -2.02 Total: -60.61 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -67.68 1.47 -66.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464884607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.367 kcal (2) G-P(sol) polarization free energy of solvation -67.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds