Wall clock time and date at job start Sat Apr 11 2020 06:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99933 * 2 1 4 4 H 1.48502 * 109.46576 * 239.99887 * 3 2 1 5 5 H 1.48498 * 109.47091 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47146 * 119.99806 * 3 2 1 7 7 C 1.37880 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99697 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99702 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46886 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00383 * 89.99957 * 10 9 7 12 12 C 1.50707 * 109.46935 * 270.00600 * 11 10 9 13 13 C 1.38227 * 119.62059 * 95.01845 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.74122 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61137 * 274.99275 * 12 11 10 18 18 C 1.34777 * 119.99928 * 270.00390 * 10 9 7 19 19 O 1.21287 * 120.00124 * 180.02562 * 18 10 9 20 20 C 1.50698 * 120.00377 * 359.97438 * 18 10 9 21 21 O 1.42894 * 109.47621 * 180.02562 * 20 18 10 22 22 C 1.42896 * 114.00303 * 180.02562 * 21 20 18 23 23 C 1.50705 * 109.47227 * 179.97438 * 22 21 20 24 24 C 1.38641 * 120.79119 * 269.71826 * 23 22 21 25 25 C 1.38208 * 119.16213 * 179.79848 * 24 23 22 26 26 N 1.31862 * 120.76282 * 0.48730 * 25 24 23 27 27 C 1.31867 * 121.72864 * 359.74065 * 26 25 24 28 28 C 1.38211 * 120.76373 * 0.02562 * 27 26 25 29 29 H 0.97000 * 120.00213 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47036 * 59.99986 * 9 7 2 31 31 H 1.08997 * 109.47234 * 299.99688 * 9 7 2 32 32 H 1.08997 * 109.47679 * 150.00067 * 11 10 9 33 33 H 1.09003 * 109.46652 * 30.00027 * 11 10 9 34 34 H 1.07998 * 120.41916 * 359.95342 * 13 12 11 35 35 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 36 36 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 37 37 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 38 38 H 1.08996 * 109.47123 * 300.00770 * 20 18 10 39 39 H 1.09001 * 109.46493 * 60.00386 * 20 18 10 40 40 H 1.09005 * 109.46736 * 299.99840 * 22 21 20 41 41 H 1.09004 * 109.47089 * 59.99827 * 22 21 20 42 42 H 1.08001 * 120.42231 * 0.02562 * 24 23 22 43 43 H 1.08000 * 119.61457 * 180.20793 * 25 24 23 44 44 H 1.08000 * 119.62280 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.42099 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6791 -4.1695 1.2692 12 6 3.9222 -3.4369 1.7043 13 6 3.8176 -2.3775 2.5859 14 6 4.9679 -1.7139 2.9839 15 6 6.1847 -2.1363 2.4703 16 6 6.2113 -3.2037 1.5931 17 7 5.0971 -3.8145 1.2399 18 6 2.6409 -4.1248 -1.1667 19 8 3.4287 -5.0470 -1.1667 20 6 2.1510 -3.5524 -2.4718 21 8 2.7541 -4.2585 -3.5579 22 6 2.3548 -3.7913 -4.8480 23 6 3.0481 -4.6020 -5.9126 24 6 4.2771 -4.2066 -6.4180 25 6 4.8849 -4.9777 -7.3907 26 7 4.3048 -6.0716 -7.8443 27 6 3.1345 -6.4752 -7.3902 28 6 2.4693 -5.7578 -6.4140 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 2.9074 -5.2272 1.1389 33 1 1.9057 -4.0556 2.0289 34 1 2.8524 -2.0728 2.9626 35 1 4.9170 -0.8851 3.6745 36 1 7.1006 -1.6402 2.7557 37 1 7.1554 -3.5413 1.1918 38 1 1.0674 -3.6548 -2.5294 39 1 2.4199 -2.4977 -2.5296 40 1 1.2753 -3.8980 -4.9549 41 1 2.6286 -2.7417 -4.9551 42 1 4.7553 -3.3095 -6.0535 43 1 5.8439 -4.6783 -7.7871 44 1 2.6901 -7.3764 -7.7863 45 1 1.5108 -6.0933 -6.0464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647200529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:29 Heat of formation + Delta-G solvation = -0.929771 kcal Electronic energy + Delta-G solvation = -28933.754689 eV Core-core repulsion = 24916.802027 eV Total energy + Delta-G solvation = -4016.952662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.21638 -39.89717 -38.91457 -37.24133 -35.08699 -33.22312 -32.84386 -32.00642 -31.37076 -31.27318 -28.53886 -27.57737 -26.50119 -25.07378 -23.52798 -23.17130 -22.84314 -22.02235 -21.67889 -18.70102 -17.15877 -16.92069 -16.59635 -16.53784 -16.27456 -16.13127 -15.68757 -15.47208 -15.36064 -15.19878 -14.98214 -14.51250 -13.93195 -13.81833 -13.68193 -13.60726 -13.15812 -12.91988 -12.68161 -12.50742 -12.26447 -11.96137 -11.77394 -11.56071 -11.49273 -11.41667 -11.27008 -11.02479 -10.81469 -10.27935 -9.88438 -9.81235 -9.56466 -9.47981 -9.44003 -9.20693 -9.02289 -8.96727 -8.69624 -8.49141 -7.81101 -6.28426 -4.35283 1.07935 1.09034 1.50234 1.74130 3.15021 3.21132 3.22751 3.31795 3.43055 3.80093 4.19462 4.23413 4.38363 4.47488 4.65618 4.74672 4.86123 5.02086 5.04689 5.06403 5.15955 5.18938 5.31386 5.33560 5.43138 5.45768 5.56424 5.59014 5.65323 5.71995 5.82713 5.90095 5.93349 5.94806 6.15877 6.20629 6.28111 6.53424 6.59782 6.61674 6.62331 6.99471 7.12008 7.22742 7.47103 7.66990 7.87780 7.94755 8.22419 8.50652 8.71155 9.00342 9.33184 10.77972 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009940 B = 0.003254 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.341452 B = 8603.899387 C = 9883.472755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.069 3.931 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.235 3.765 10 N -0.593 5.593 11 C 0.174 3.826 12 C 0.123 3.877 13 C -0.132 4.132 14 C -0.085 4.085 15 C -0.181 4.181 16 C 0.087 3.913 17 N -0.460 5.460 18 C 0.520 3.480 19 O -0.532 6.532 20 C 0.050 3.950 21 O -0.361 6.361 22 C 0.098 3.902 23 C -0.037 4.037 24 C -0.150 4.150 25 C 0.094 3.906 26 N -0.486 5.486 27 C 0.093 3.907 28 C -0.151 4.151 29 H 0.266 0.734 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.147 0.853 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.137 0.863 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.962 -4.659 -3.987 7.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.135 4.135 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.573 4.573 8 H 0.078 0.922 9 C 0.115 3.885 10 N -0.327 5.327 11 C 0.050 3.950 12 C -0.016 4.016 13 C -0.153 4.153 14 C -0.111 4.111 15 C -0.201 4.201 16 C -0.070 4.070 17 N -0.169 5.169 18 C 0.307 3.693 19 O -0.408 6.408 20 C -0.029 4.029 21 O -0.279 6.279 22 C 0.021 3.979 23 C -0.045 4.045 24 C -0.170 4.170 25 C -0.063 4.063 26 N -0.196 5.196 27 C -0.064 4.064 28 C -0.171 4.171 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.164 0.836 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.155 0.845 43 H 0.173 0.827 44 H 0.173 0.827 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.764 -6.373 -5.192 9.500 hybrid contribution -0.201 2.934 1.315 3.222 sum 4.563 -3.438 -3.877 6.905 Atomic orbital electron populations 1.69898 1.05898 1.27442 1.49608 1.24887 0.94754 0.99048 0.94768 0.86665 0.79664 0.82924 0.78951 1.20204 1.21092 1.20068 1.21428 0.93495 0.90307 1.52028 0.92246 1.19511 0.87339 0.82775 0.98831 1.48075 1.45438 1.35752 1.03411 1.20092 0.91137 0.97475 0.86339 1.21649 0.93654 0.93994 0.92311 1.21989 0.99507 0.95630 0.98141 1.21501 0.92564 0.98517 0.98501 1.22038 0.98588 0.99272 1.00242 1.22651 0.96710 0.92902 0.94754 1.67580 0.98186 1.29494 1.21687 1.19945 0.81383 0.83006 0.84990 1.90677 1.33824 1.29058 1.87284 1.22308 0.97679 0.97297 0.85642 1.88009 1.68910 1.58845 1.12145 1.21321 0.97755 0.96568 0.82277 1.20056 0.94606 0.94988 0.94864 1.22129 0.95210 1.01782 0.97902 1.22738 0.99345 0.90457 0.93766 1.67638 1.10380 1.14702 1.26847 1.22735 0.90932 0.98938 0.93783 1.22105 1.01896 0.95082 0.98026 0.92421 0.94434 0.94299 0.89268 0.89295 0.84563 0.85452 0.85642 0.83587 0.90515 0.89043 0.91845 0.91730 0.84536 0.82670 0.82684 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.97 13.29 55.43 0.74 -22.23 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 19.75 29.54 -169.99 -5.02 14.73 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.53 -12.90 9.13 -34.44 -0.31 -13.21 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.24 5.14 5.01 -5.20 -0.03 5.12 16 10 N -0.59 -12.13 2.44 -176.43 -0.43 -12.56 16 11 C 0.17 3.20 5.76 -5.19 -0.03 3.17 16 12 C 0.12 2.33 6.36 -82.58 -0.53 1.80 16 13 C -0.13 -2.28 9.57 -39.44 -0.38 -2.66 16 14 C -0.08 -1.30 10.18 -39.28 -0.40 -1.70 16 15 C -0.18 -2.64 10.11 -39.44 -0.40 -3.04 16 16 C 0.09 1.44 11.18 -17.55 -0.20 1.24 16 17 N -0.46 -9.06 10.27 -9.47 -0.10 -9.16 16 18 C 0.52 11.12 7.75 -10.99 -0.09 11.04 16 19 O -0.53 -12.82 16.08 -14.36 -0.23 -13.05 16 20 C 0.05 0.93 4.97 36.00 0.18 1.11 16 21 O -0.36 -6.58 9.86 -55.14 -0.54 -7.13 16 22 C 0.10 1.35 6.11 36.01 0.22 1.57 16 23 C -0.04 -0.49 5.55 -104.32 -0.58 -1.07 16 24 C -0.15 -1.86 9.82 -39.44 -0.39 -2.24 16 25 C 0.09 1.11 11.18 -17.55 -0.20 0.91 16 26 N -0.49 -6.31 10.36 -13.25 -0.14 -6.45 16 27 C 0.09 1.07 11.18 -17.55 -0.20 0.88 16 28 C -0.15 -1.80 9.82 -39.44 -0.39 -2.19 16 29 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.04 0.84 6.44 -51.93 -0.33 0.50 16 31 H 0.04 0.87 7.89 -51.93 -0.41 0.46 16 32 H 0.09 1.67 7.42 -51.93 -0.39 1.29 16 33 H 0.09 1.40 7.79 -51.93 -0.40 1.00 16 34 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 35 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 36 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 38 H 0.08 1.29 7.40 -51.93 -0.38 0.90 16 39 H 0.09 1.76 8.00 -51.93 -0.42 1.34 16 40 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 42 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -32.17 394.04 -9.69 -41.85 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.10 Total: 5.73 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -3.80 Total: 2.32 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.07 Total: -50.40 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.77 Total: -20.18 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.17 -9.69 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647200529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.924 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds