Wall clock time and date at job start Sat Apr 11 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38235 * 120.00292 * 2 1 4 4 C 1.38230 * 119.99899 * 179.97438 * 3 2 1 5 5 C 1.38235 * 120.00326 * 359.95697 * 4 3 2 6 6 C 1.50702 * 120.00236 * 179.72466 * 5 4 3 7 7 C 1.53005 * 110.53084 * 270.69857 * 6 5 4 8 8 N 1.47306 * 110.59825 * 33.52880 * 6 5 4 9 9 C 1.34525 * 106.61762 * 118.53080 * 8 6 5 10 10 O 1.21542 * 123.76756 * 179.97438 * 9 8 6 11 11 N 1.33786 * 112.45933 * 359.97438 * 9 8 6 12 12 C 1.46506 * 124.17868 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47295 * 89.97490 * 12 11 9 14 14 H 1.09000 * 109.46851 * 54.99685 * 13 12 11 15 15 C 1.47207 * 109.47052 * 295.00149 * 13 12 11 16 16 N 6.99390 * 132.17272 * 85.09339 * 2 1 3 17 17 C 1.52995 * 109.47325 * 174.99926 * 13 12 11 18 18 C 1.50698 * 109.47513 * 184.99898 * 17 13 12 19 19 H 1.08003 * 119.99881 * 0.02562 * 18 17 13 20 20 C 1.37868 * 120.00269 * 180.02562 * 18 17 13 21 21 N 1.31522 * 120.00198 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00274 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47357 * 90.00138 * 22 20 18 24 24 H 1.48500 * 109.47373 * 210.00036 * 22 20 18 25 25 H 1.48505 * 109.46889 * 330.00050 * 22 20 18 26 26 C 1.35116 * 111.68563 * 0.09228 * 11 9 8 27 27 O 1.21239 * 127.33776 * 179.97438 * 26 11 9 28 28 C 1.38234 * 119.99814 * 359.97438 * 5 4 3 29 29 C 1.38234 * 119.99503 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46873 * 89.99571 * 1 2 3 31 31 H 1.08992 * 109.47454 * 210.00138 * 1 2 3 32 32 H 1.08996 * 109.46937 * 330.00657 * 1 2 3 33 33 H 1.08001 * 119.99730 * 359.97438 * 3 2 1 34 34 H 1.08000 * 120.00376 * 179.97438 * 4 3 2 35 35 H 1.08997 * 109.47111 * 60.00248 * 7 6 5 36 36 H 1.09000 * 109.46621 * 179.97438 * 7 6 5 37 37 H 1.09005 * 109.47185 * 300.00166 * 7 6 5 38 38 H 0.97000 * 126.69195 * 298.55866 * 8 6 5 39 39 H 1.08999 * 109.46863 * 209.97808 * 12 11 9 40 40 H 1.09000 * 109.47075 * 329.97389 * 12 11 9 41 41 H 1.08997 * 109.47261 * 304.99982 * 17 13 12 42 42 H 1.09000 * 109.46993 * 65.00158 * 17 13 12 43 43 H 0.96997 * 120.00269 * 179.97438 * 21 20 18 44 44 H 1.08001 * 120.00299 * 179.97438 * 28 5 4 45 45 H 1.07997 * 120.00455 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0001 0.0020 6 6 5.7787 -0.0002 -0.0037 7 6 6.3099 0.0124 -1.4385 8 7 6.2999 1.1518 0.7521 9 6 7.0154 0.6493 1.7744 10 8 7.5878 1.3341 2.5994 11 7 7.0266 -0.6885 1.7816 12 6 7.7264 -1.5004 2.7803 13 6 6.7868 -1.7880 3.9531 14 1 5.8722 -2.2497 3.5810 15 6 6.4567 -0.5274 4.6378 16 7 6.2025 0.4433 5.1644 17 6 7.4741 -2.7377 4.9362 18 6 6.5064 -3.1181 6.0270 19 1 5.5015 -2.7224 6.0196 20 6 6.9039 -3.9712 7.0345 21 7 6.0592 -4.3036 7.9863 22 14 8.6421 -4.6550 7.0479 23 1 9.5281 -3.7402 7.8118 24 1 8.6423 -5.9943 7.6894 25 1 9.1379 -4.7741 5.6531 26 6 6.3141 -1.1993 0.7534 27 8 6.1375 -2.3697 0.4908 28 6 3.5805 -1.1972 0.0034 29 6 2.1981 -1.1972 0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5137 33 1 1.6583 2.1324 -0.0004 34 1 4.1207 2.1323 0.0001 35 1 5.9543 0.9069 -1.9498 36 1 7.3998 0.0126 -1.4224 37 1 5.9541 -0.8730 -1.9655 38 1 6.1550 2.0898 0.5519 39 1 8.0414 -2.4408 2.3281 40 1 8.6014 -0.9592 3.1401 41 1 7.7979 -3.6348 4.4087 42 1 8.3399 -2.2419 5.3752 43 1 6.3387 -4.9041 8.6949 44 1 4.1204 -2.1326 0.0041 45 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007201206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:20 Heat of formation + Delta-G solvation = 6.556723 kcal Electronic energy + Delta-G solvation = -29836.304910 eV Core-core repulsion = 25819.676886 eV Total energy + Delta-G solvation = -4016.628024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.76725 -39.66334 -38.64003 -37.22219 -36.40496 -35.13743 -33.73647 -32.86667 -31.77464 -31.22252 -30.58162 -28.05644 -27.19172 -25.12193 -24.12771 -23.06655 -22.55891 -21.55138 -21.03492 -20.34931 -18.28686 -17.60702 -17.02405 -16.63496 -16.39240 -16.08820 -15.86142 -15.45059 -15.27563 -14.96937 -14.42065 -14.23881 -14.20897 -13.92802 -13.82826 -13.57934 -13.42141 -13.21734 -12.88113 -12.59278 -12.55009 -12.50104 -12.38040 -12.15708 -11.96074 -11.61054 -11.53811 -11.35609 -11.32484 -10.98709 -10.85147 -10.39052 -10.34765 -10.17105 -9.96446 -9.73161 -9.50901 -9.32857 -9.15648 -8.83685 -8.61580 -6.10528 -4.11823 0.94389 1.16918 1.50710 2.09760 2.89232 2.96526 3.28182 3.35072 3.35904 3.47664 3.64778 3.68978 3.70721 4.03591 4.38471 4.46030 4.57819 4.60605 4.67536 4.79791 4.97435 5.05799 5.12155 5.19787 5.21016 5.23048 5.24182 5.32594 5.39768 5.47141 5.52106 5.54541 5.59320 5.67516 5.79278 5.85446 6.11183 6.14973 6.18284 6.22981 6.36091 6.61087 6.72580 6.87898 6.96086 7.05973 7.24275 7.60471 8.06254 8.39032 8.46846 8.92053 9.48395 11.02472 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012214 B = 0.003455 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.820231 B = 8103.171305 C = 8981.619292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 C -0.121 4.121 4 C -0.093 4.093 5 C -0.102 4.102 6 C 0.166 3.834 7 C -0.140 4.140 8 N -0.722 5.722 9 C 0.700 3.300 10 O -0.524 6.524 11 N -0.575 5.575 12 C 0.120 3.880 13 C 0.004 3.996 14 H 0.109 0.891 15 C 0.228 3.772 16 N -0.442 5.442 17 C -0.002 4.002 18 C -0.528 4.528 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.896 5.896 22 Si 0.877 3.123 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.261 1.261 26 C 0.536 3.464 27 O -0.454 6.454 28 C -0.101 4.101 29 C -0.115 4.115 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.437 0.563 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.042 0.958 42 H 0.025 0.975 43 H 0.265 0.735 44 H 0.143 0.857 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.432 8.331 -25.052 26.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.078 4.078 3 C -0.139 4.139 4 C -0.111 4.111 5 C -0.103 4.103 6 C 0.075 3.925 7 C -0.198 4.198 8 N -0.387 5.387 9 C 0.401 3.599 10 O -0.396 6.396 11 N -0.321 5.321 12 C -0.001 4.001 13 C -0.019 4.019 14 H 0.127 0.873 15 C -0.090 4.090 16 N -0.118 5.118 17 C -0.041 4.041 18 C -0.566 4.566 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.704 3.296 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.186 1.186 26 C 0.322 3.678 27 O -0.322 6.322 28 C -0.119 4.119 29 C -0.133 4.133 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.281 0.719 39 H 0.134 0.866 40 H 0.122 0.878 41 H 0.060 0.940 42 H 0.043 0.957 43 H 0.075 0.925 44 H 0.160 0.840 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.547 9.347 -23.692 25.872 hybrid contribution 0.802 -0.329 0.076 0.871 sum -3.744 9.018 -23.616 25.555 Atomic orbital electron populations 1.20827 0.91006 1.03147 1.02365 1.20045 0.96322 0.93231 0.98205 1.20975 0.93759 0.97763 1.01416 1.20756 0.94239 0.96848 0.99245 1.19335 0.91650 0.94620 1.04722 1.20127 0.92487 0.85243 0.94684 1.21992 1.01893 1.04643 0.91315 1.45626 1.54930 1.08655 1.29471 1.15898 0.80047 0.81866 0.82102 1.91081 1.47625 1.61005 1.39843 1.46578 1.49276 1.07890 1.28320 1.22052 0.95246 0.96050 0.86768 1.19327 1.00788 0.88055 0.93729 0.87295 1.28599 0.93323 0.93660 0.93437 1.80887 1.08839 1.12695 1.09400 1.19623 0.96729 0.93555 0.94165 1.20951 0.99431 1.28851 1.07326 0.90822 1.24971 0.97311 0.95715 0.95001 1.69904 1.35319 1.35184 1.12954 0.86820 0.85148 0.78647 0.78974 1.20176 1.21192 1.18584 1.20629 0.77191 0.89676 0.80324 1.90771 1.56130 1.16590 1.68749 1.21401 0.94690 0.98282 0.97546 1.21073 0.93853 0.97852 1.00492 0.91023 0.91220 0.91435 0.85762 0.86169 0.90216 0.90933 0.89554 0.71873 0.86631 0.87773 0.93997 0.95672 0.92517 0.83960 0.85445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.08 -0.73 5.88 -104.62 -0.62 -1.34 16 3 C -0.12 -1.09 9.70 -39.59 -0.38 -1.47 16 4 C -0.09 -0.85 9.35 -39.59 -0.37 -1.22 16 5 C -0.10 -1.06 4.88 -104.62 -0.51 -1.57 16 6 C 0.17 1.64 1.16 -133.25 -0.15 1.48 16 7 C -0.14 -0.96 8.96 37.16 0.33 -0.63 16 8 N -0.72 -7.52 5.33 -54.02 -0.29 -7.81 16 9 C 0.70 10.22 7.98 -88.03 -0.70 9.52 16 10 O -0.52 -9.62 16.52 5.33 0.09 -9.53 16 11 N -0.57 -8.09 2.50 -120.63 -0.30 -8.39 16 12 C 0.12 1.77 5.14 -4.04 -0.02 1.75 16 13 C 0.00 0.07 2.42 -93.41 -0.23 -0.16 16 14 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 15 C 0.23 5.00 12.19 -20.85 -0.25 4.75 16 16 N -0.44 -10.64 18.48 42.05 0.78 -9.86 16 17 C 0.00 -0.04 3.49 -27.89 -0.10 -0.14 16 18 C -0.53 -14.42 9.15 -34.44 -0.32 -14.74 16 19 H 0.07 2.22 7.84 -52.48 -0.41 1.81 16 20 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 21 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 22 Si 0.88 20.70 27.47 -169.99 -4.67 16.03 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 26 C 0.54 6.81 6.51 -10.40 -0.07 6.74 16 27 O -0.45 -6.32 15.66 5.59 0.09 -6.23 16 28 C -0.10 -1.12 9.18 -39.58 -0.36 -1.48 16 29 C -0.11 -1.16 9.70 -39.58 -0.38 -1.54 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.12 0.85 7.02 -52.49 -0.37 0.48 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.44 3.44 8.13 -40.82 -0.33 3.10 16 39 H 0.12 1.42 8.01 -51.93 -0.42 1.00 16 40 H 0.10 1.49 7.86 -51.93 -0.41 1.09 16 41 H 0.04 0.84 7.20 -51.93 -0.37 0.47 16 42 H 0.03 0.54 7.57 -51.93 -0.39 0.15 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.14 1.66 5.70 -52.49 -0.30 1.36 16 45 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -35.58 382.48 -7.61 -43.18 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.97 Total: 1.82 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -3.87 Total: 1.46 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.96 Total: -52.50 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.18 Total: -15.76 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.58 -7.61 -43.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007201206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.740 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds