Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30635 * 119.25476 * 2 1 4 4 C 1.33526 * 121.50252 * 179.73102 * 3 2 1 5 5 C 1.50702 * 120.04391 * 180.28841 * 4 3 2 6 6 C 1.36199 * 119.90722 * 0.53402 * 4 3 2 7 7 C 1.50699 * 120.70105 * 179.73636 * 6 4 3 8 8 C 1.52997 * 109.47226 * 94.72342 * 7 6 4 9 9 C 1.50699 * 109.47226 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00083 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00036 * 179.97438 * 9 8 7 12 12 C 1.39244 * 120.00319 * 175.70587 * 11 9 8 13 13 C 1.39476 * 119.83678 * 215.01395 * 12 11 9 14 14 C 1.36373 * 120.16710 * 179.76069 * 13 12 11 15 15 C 1.40866 * 119.82843 * 0.51070 * 14 13 12 16 16 C 1.41153 * 120.16546 * 179.71601 * 15 14 13 17 17 H 1.07998 * 120.00691 * 214.80796 * 16 15 14 18 18 C 1.39915 * 119.99702 * 34.80795 * 16 15 14 19 19 N 1.30872 * 119.99602 * 355.56132 * 18 16 15 20 20 Si 1.86796 * 119.99984 * 175.55640 * 18 16 15 21 21 H 1.48502 * 109.46993 * 60.00211 * 20 18 16 22 22 H 1.48498 * 109.46992 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47287 * 300.00209 * 20 18 16 24 24 C 1.40865 * 119.67338 * 359.74739 * 15 14 13 25 25 C 1.36373 * 119.82879 * 359.97438 * 24 15 14 26 26 C 1.41023 * 118.59290 * 359.46094 * 6 4 3 27 27 O 1.21989 * 120.70429 * 180.25048 * 26 6 4 28 28 N 1.34744 * 119.24987 * 179.97438 * 2 1 3 29 29 H 0.96999 * 120.04494 * 359.97438 * 28 2 1 30 30 H 1.09004 * 109.47253 * 270.02318 * 1 2 3 31 31 H 1.09003 * 109.46813 * 30.01285 * 1 2 3 32 32 H 1.08990 * 109.47236 * 150.01694 * 1 2 3 33 33 H 1.09000 * 109.47600 * 270.24199 * 5 4 3 34 34 H 1.09000 * 109.47102 * 30.24672 * 5 4 3 35 35 H 1.09007 * 109.46715 * 150.24139 * 5 4 3 36 36 H 1.09001 * 109.47133 * 334.71906 * 7 6 4 37 37 H 1.09001 * 109.47328 * 214.72182 * 7 6 4 38 38 H 1.09001 * 109.47025 * 299.99378 * 8 7 6 39 39 H 1.09001 * 109.47420 * 59.99740 * 8 7 6 40 40 H 0.97005 * 120.00395 * 355.70748 * 11 9 8 41 41 H 1.07995 * 119.91579 * 0.02562 * 13 12 11 42 42 H 1.08001 * 120.08503 * 180.25280 * 14 13 12 43 43 H 0.96997 * 119.99490 * 179.97438 * 19 18 16 44 44 H 1.08006 * 120.08922 * 179.97438 * 24 15 14 45 45 H 1.08003 * 119.91520 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1455 1.1397 0.0000 4 6 3.4797 1.1921 0.0053 5 6 4.1824 2.5252 0.0117 6 6 4.2046 0.0391 0.0000 7 6 5.7111 0.0773 -0.0001 8 6 6.2242 -0.0350 1.4369 9 6 7.7307 0.0039 1.4368 10 8 8.3345 0.1105 0.3905 11 7 8.4070 -0.0797 2.5996 12 6 9.7983 -0.1339 2.5936 13 6 10.4670 -0.9025 3.5462 14 6 11.8294 -0.9643 3.5434 15 6 12.5616 -0.2408 2.5818 16 6 13.9721 -0.2948 2.5762 17 1 14.5449 0.5777 2.2988 18 6 14.6282 -1.4789 2.9300 19 7 13.9383 -2.5089 3.3495 20 14 16.4886 -1.5895 2.8035 21 1 17.1062 -0.5616 3.6794 22 1 16.9346 -2.9389 3.2342 23 1 16.9039 -1.3558 1.3971 24 6 11.8794 0.5376 1.6263 25 6 10.5165 0.5850 1.6381 26 6 3.5155 -1.1914 0.0004 27 8 4.1263 -2.2473 0.0003 28 7 2.1654 -1.1756 0.0005 29 1 1.6702 -2.0096 0.0013 30 1 -0.3634 0.0004 1.0277 31 1 -0.3633 0.8899 -0.5141 32 1 -0.3633 -0.8900 -0.5135 33 1 4.3521 2.8516 -1.0143 34 1 3.5645 3.2592 0.5290 35 1 5.1391 2.4291 0.5253 36 1 6.0506 1.0175 -0.4348 37 1 6.0957 -0.7551 -0.5893 38 1 5.8397 0.7975 2.0261 39 1 5.8846 -0.9752 1.8715 40 1 7.9245 -0.1022 3.4409 41 1 9.9044 -1.4535 4.2852 42 1 12.3456 -1.5631 4.2791 43 1 14.3931 -3.3299 3.5945 44 1 12.4341 1.0953 0.8863 45 1 9.9920 1.1816 0.9064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057812854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = -24.316796 kcal Electronic energy + Delta-G solvation = -28006.951488 eV Core-core repulsion = 23988.984688 eV Total energy + Delta-G solvation = -4017.966800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.14650 -39.63087 -38.09491 -37.34224 -36.33591 -34.38002 -33.37605 -32.84920 -31.88047 -29.75858 -29.53922 -29.09055 -28.10217 -25.26052 -23.93887 -22.92101 -22.37986 -21.38339 -20.61382 -19.47776 -18.86655 -18.42218 -17.31323 -16.87302 -16.36418 -16.27995 -16.07878 -15.35059 -15.11461 -14.54242 -14.29210 -14.11689 -13.93667 -13.83237 -13.61849 -13.40979 -13.22919 -12.91164 -12.73860 -12.51312 -12.42073 -12.28444 -12.06470 -12.01708 -11.64760 -11.30845 -11.10682 -11.07267 -10.91885 -10.80340 -10.68071 -10.43111 -10.32658 -9.97773 -9.44151 -9.36865 -9.06788 -8.81302 -8.52803 -7.49378 -6.80510 -6.56972 -4.29489 0.24137 1.51425 2.30794 2.62593 3.08898 3.11819 3.14150 3.15390 3.19636 3.38594 3.41138 3.82767 4.01879 4.03397 4.31832 4.58583 4.74472 4.75368 4.78156 4.87502 5.05278 5.18088 5.20472 5.29472 5.30490 5.48687 5.51654 5.65690 5.72142 5.77655 6.02183 6.13417 6.22657 6.24826 6.28341 6.50483 6.82087 6.98247 7.11991 7.26670 7.35162 7.42823 7.56900 7.68929 7.80854 7.93320 8.11159 8.33099 8.37119 8.67512 8.83247 8.97433 9.05877 10.34164 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.030852 B = 0.001860 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.344713 B =15052.676163 C =15438.278954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.389 3.611 3 N -0.535 5.535 4 C 0.178 3.822 5 C -0.112 4.112 6 C -0.253 4.253 7 C -0.038 4.038 8 C -0.131 4.131 9 C 0.500 3.500 10 O -0.531 6.531 11 N -0.654 5.654 12 C 0.006 3.994 13 C -0.122 4.122 14 C -0.141 4.141 15 C 0.099 3.901 16 C -0.462 4.462 17 H 0.075 0.925 18 C 0.069 3.931 19 N -0.813 5.813 20 Si 0.916 3.084 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.266 1.266 24 C -0.205 4.205 25 C -0.086 4.086 26 C 0.523 3.477 27 O -0.527 6.527 28 N -0.631 5.631 29 H 0.416 0.584 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.395 0.605 41 H 0.090 0.910 42 H 0.132 0.868 43 H 0.278 0.722 44 H 0.096 0.904 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.642 5.512 -2.729 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.124 3.876 3 N -0.259 5.259 4 C 0.059 3.941 5 C -0.169 4.169 6 C -0.260 4.260 7 C -0.077 4.077 8 C -0.172 4.172 9 C 0.287 3.713 10 O -0.408 6.408 11 N -0.297 5.297 12 C -0.087 4.087 13 C -0.142 4.142 14 C -0.161 4.161 15 C 0.096 3.904 16 C -0.493 4.493 17 H 0.093 0.907 18 C -0.146 4.146 19 N -0.440 5.440 20 Si 0.741 3.259 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.191 1.191 24 C -0.225 4.225 25 C -0.106 4.106 26 C 0.321 3.679 27 O -0.404 6.404 28 N -0.271 5.271 29 H 0.255 0.745 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.228 0.772 41 H 0.109 0.891 42 H 0.149 0.851 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -26.919 5.587 -3.409 27.703 hybrid contribution 0.661 -1.480 0.382 1.665 sum -26.258 4.107 -3.027 26.749 Atomic orbital electron populations 1.20991 0.85017 1.05640 1.05241 1.23163 0.96422 0.80966 0.87074 1.68123 1.09907 1.23751 1.24089 1.21097 0.88248 0.96197 0.88547 1.20874 1.00301 0.91761 1.03976 1.21423 0.98960 0.91448 1.14157 1.19927 0.86926 1.04763 0.96070 1.21592 0.92705 1.04020 0.98858 1.20532 0.89453 0.77304 0.84020 1.90680 1.70048 1.48633 1.31415 1.43039 1.06202 1.72392 1.08053 1.17298 0.80357 1.06751 1.04252 1.20326 0.95420 0.99236 0.99266 1.21186 0.91536 1.03059 1.00330 1.17719 0.93574 0.90120 0.88981 1.19455 0.91621 0.97714 1.40492 0.90681 1.25880 1.00689 0.95356 0.92647 1.69758 1.37409 1.03115 1.33729 0.86249 0.82097 0.77944 0.79625 1.19085 1.20472 1.19122 1.20804 0.93053 1.07559 1.01100 1.20400 0.93969 0.98369 0.97898 1.17171 0.80555 0.91415 0.78717 1.91029 1.65490 1.32851 1.51008 1.44755 1.09875 1.10691 1.61825 0.74517 0.88207 0.87658 0.89467 0.89401 0.89924 0.89507 0.89561 0.89452 0.89537 0.89095 0.77183 0.89143 0.85067 0.91133 0.88625 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.17 10.24 36.01 0.37 0.20 16 2 C 0.39 2.43 7.71 -155.57 -1.20 1.23 16 3 N -0.53 -4.60 10.22 -6.89 -0.07 -4.67 16 4 C 0.18 1.74 6.77 -82.59 -0.56 1.18 16 5 C -0.11 -0.87 9.38 36.01 0.34 -0.53 16 6 C -0.25 -2.97 5.17 -104.30 -0.54 -3.51 16 7 C -0.04 -0.51 3.75 -27.88 -0.10 -0.61 16 8 C -0.13 -1.74 5.62 -27.88 -0.16 -1.89 16 9 C 0.50 8.99 7.66 -10.99 -0.08 8.91 16 10 O -0.53 -11.68 13.40 5.56 0.07 -11.60 16 11 N -0.65 -11.92 5.30 -9.74 -0.05 -11.97 16 12 C 0.01 0.13 6.31 -83.57 -0.53 -0.40 16 13 C -0.12 -2.89 9.90 -39.79 -0.39 -3.28 16 14 C -0.14 -3.73 8.62 -39.26 -0.34 -4.07 16 15 C 0.10 2.71 5.55 -106.80 -0.59 2.12 16 16 C -0.46 -12.61 9.03 -37.85 -0.34 -12.95 16 17 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 18 C 0.07 1.79 5.42 -17.33 -0.09 1.70 16 19 N -0.81 -21.70 10.60 55.55 0.59 -21.11 16 20 Si 0.92 19.46 29.56 -169.99 -5.03 14.43 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 C -0.21 -5.34 9.74 -39.26 -0.38 -5.72 16 25 C -0.09 -2.13 8.61 -39.79 -0.34 -2.47 16 26 C 0.52 6.40 7.74 -15.10 -0.12 6.28 16 27 O -0.53 -8.50 17.27 4.93 0.09 -8.41 16 28 N -0.63 -4.74 5.25 -12.27 -0.06 -4.80 16 29 H 0.42 1.92 8.78 -40.82 -0.36 1.56 16 30 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 31 H 0.10 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.69 6.30 -51.93 -0.33 0.36 16 36 H 0.09 1.08 6.43 -51.93 -0.33 0.75 16 37 H 0.09 1.42 7.78 -51.93 -0.40 1.01 16 38 H 0.09 0.89 7.88 -51.93 -0.41 0.48 16 39 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.39 5.66 8.82 -40.82 -0.36 5.30 16 41 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 42 H 0.13 3.57 6.13 -52.49 -0.32 3.25 16 43 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 44 H 0.10 2.36 8.06 -52.48 -0.42 1.93 16 45 H 0.11 2.59 6.22 -52.48 -0.33 2.26 16 LS Contribution 379.58 15.07 5.72 5.72 Total: -1.00 -36.05 379.58 -9.58 -45.63 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.77 Total: 10.60 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -5.07 Total: -13.82 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.40 Total: -42.56 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.16 Total: -20.02 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.05 -9.58 -45.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057812854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.315 kcal (2) G-P(sol) polarization free energy of solvation -36.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds