Wall clock time and date at job start Sat Apr 11 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30635 * 119.25476 * 2 1 4 4 C 1.33526 * 121.50252 * 179.73102 * 3 2 1 5 5 C 1.50702 * 120.04391 * 180.28841 * 4 3 2 6 6 C 1.36199 * 119.90722 * 0.53402 * 4 3 2 7 7 C 1.50699 * 120.70105 * 179.73636 * 6 4 3 8 8 C 1.52997 * 109.47226 * 94.72342 * 7 6 4 9 9 C 1.50699 * 109.47226 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00083 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00036 * 179.97438 * 9 8 7 12 12 C 1.39244 * 120.00319 * 175.70587 * 11 9 8 13 13 C 1.39476 * 119.83678 * 215.01395 * 12 11 9 14 14 C 1.36373 * 120.16710 * 179.76069 * 13 12 11 15 15 C 1.40866 * 119.82843 * 0.51070 * 14 13 12 16 16 C 1.41153 * 120.16546 * 179.71601 * 15 14 13 17 17 H 1.07998 * 120.00691 * 214.80796 * 16 15 14 18 18 C 1.39915 * 119.99702 * 34.80795 * 16 15 14 19 19 N 1.30872 * 119.99602 * 355.56132 * 18 16 15 20 20 Si 1.86796 * 119.99984 * 175.55640 * 18 16 15 21 21 H 1.48502 * 109.46993 * 60.00211 * 20 18 16 22 22 H 1.48498 * 109.46992 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47287 * 300.00209 * 20 18 16 24 24 C 1.40865 * 119.67338 * 359.74739 * 15 14 13 25 25 C 1.36373 * 119.82879 * 359.97438 * 24 15 14 26 26 C 1.41023 * 118.59290 * 359.46094 * 6 4 3 27 27 O 1.21989 * 120.70429 * 180.25048 * 26 6 4 28 28 N 1.34744 * 119.24987 * 179.97438 * 2 1 3 29 29 H 0.96999 * 120.04494 * 359.97438 * 28 2 1 30 30 H 1.09004 * 109.47253 * 270.02318 * 1 2 3 31 31 H 1.09003 * 109.46813 * 30.01285 * 1 2 3 32 32 H 1.08990 * 109.47236 * 150.01694 * 1 2 3 33 33 H 1.09000 * 109.47600 * 270.24199 * 5 4 3 34 34 H 1.09000 * 109.47102 * 30.24672 * 5 4 3 35 35 H 1.09007 * 109.46715 * 150.24139 * 5 4 3 36 36 H 1.09001 * 109.47133 * 334.71906 * 7 6 4 37 37 H 1.09001 * 109.47328 * 214.72182 * 7 6 4 38 38 H 1.09001 * 109.47025 * 299.99378 * 8 7 6 39 39 H 1.09001 * 109.47420 * 59.99740 * 8 7 6 40 40 H 0.97005 * 120.00395 * 355.70748 * 11 9 8 41 41 H 1.07995 * 119.91579 * 0.02562 * 13 12 11 42 42 H 1.08001 * 120.08503 * 180.25280 * 14 13 12 43 43 H 0.96997 * 119.99490 * 179.97438 * 19 18 16 44 44 H 1.08006 * 120.08922 * 179.97438 * 24 15 14 45 45 H 1.08003 * 119.91520 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1455 1.1397 0.0000 4 6 3.4797 1.1921 0.0053 5 6 4.1824 2.5252 0.0117 6 6 4.2046 0.0391 0.0000 7 6 5.7111 0.0773 -0.0001 8 6 6.2242 -0.0350 1.4369 9 6 7.7307 0.0039 1.4368 10 8 8.3345 0.1105 0.3905 11 7 8.4070 -0.0797 2.5996 12 6 9.7983 -0.1339 2.5936 13 6 10.4670 -0.9025 3.5462 14 6 11.8294 -0.9643 3.5434 15 6 12.5616 -0.2408 2.5818 16 6 13.9721 -0.2948 2.5762 17 1 14.5449 0.5777 2.2988 18 6 14.6282 -1.4789 2.9300 19 7 13.9383 -2.5089 3.3495 20 14 16.4886 -1.5895 2.8035 21 1 17.1062 -0.5616 3.6794 22 1 16.9346 -2.9389 3.2342 23 1 16.9039 -1.3558 1.3971 24 6 11.8794 0.5376 1.6263 25 6 10.5165 0.5850 1.6381 26 6 3.5155 -1.1914 0.0004 27 8 4.1263 -2.2473 0.0003 28 7 2.1654 -1.1756 0.0005 29 1 1.6702 -2.0096 0.0013 30 1 -0.3634 0.0004 1.0277 31 1 -0.3633 0.8899 -0.5141 32 1 -0.3633 -0.8900 -0.5135 33 1 4.3521 2.8516 -1.0143 34 1 3.5645 3.2592 0.5290 35 1 5.1391 2.4291 0.5253 36 1 6.0506 1.0175 -0.4348 37 1 6.0957 -0.7551 -0.5893 38 1 5.8397 0.7975 2.0261 39 1 5.8846 -0.9752 1.8715 40 1 7.9245 -0.1022 3.4409 41 1 9.9044 -1.4535 4.2852 42 1 12.3456 -1.5631 4.2791 43 1 14.3931 -3.3299 3.5945 44 1 12.4341 1.0953 0.8863 45 1 9.9920 1.1816 0.9064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057812854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:35 Heat of formation + Delta-G solvation = -48.504221 kcal Electronic energy + Delta-G solvation = -28008.000333 eV Core-core repulsion = 23988.984688 eV Total energy + Delta-G solvation = -4019.015645 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.89165 -41.22249 -39.15871 -38.94432 -37.19355 -36.14733 -34.72920 -34.25592 -32.61049 -31.49830 -30.85574 -30.22284 -29.15332 -26.91136 -25.11633 -23.66346 -23.45109 -23.00788 -22.37206 -21.06764 -19.61771 -19.30096 -19.15405 -18.36903 -17.79833 -17.15850 -17.04447 -16.97148 -16.59704 -15.75242 -15.44407 -15.33531 -14.99259 -14.83684 -14.64355 -14.46465 -14.24216 -14.15055 -13.96367 -13.84118 -13.58553 -13.37447 -13.27680 -13.16951 -12.91048 -12.80428 -12.75061 -12.73724 -12.48020 -12.07930 -11.79600 -11.52852 -11.40422 -11.33539 -11.21353 -11.08419 -10.78806 -10.57679 -9.48033 -9.38254 -8.73498 -8.50816 -6.33735 -0.43339 0.73593 0.79123 1.12900 1.38589 1.46265 1.51043 1.66576 1.79079 2.23215 2.30984 2.51509 2.80387 2.88649 3.40862 3.62986 3.69189 3.75878 3.96290 4.00305 4.23511 4.34380 4.39563 4.50665 4.57249 4.60026 4.69684 4.74312 4.77053 4.82033 4.93048 5.04783 5.05377 5.13754 5.14687 5.17387 5.32002 5.34526 5.37907 5.43591 5.62215 5.68987 5.90398 6.01920 6.13221 6.38216 6.66259 6.72801 6.76264 6.76781 6.95867 6.99444 7.39528 8.41897 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.030852 B = 0.001860 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.344713 B =15052.676163 C =15438.278954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.404 3.596 3 N -0.552 5.552 4 C 0.202 3.798 5 C -0.115 4.115 6 C -0.292 4.292 7 C -0.029 4.029 8 C -0.115 4.115 9 C 0.499 3.501 10 O -0.573 6.573 11 N -0.647 5.647 12 C 0.020 3.980 13 C -0.122 4.122 14 C -0.159 4.159 15 C 0.065 3.935 16 C -0.498 4.498 17 H 0.074 0.926 18 C 0.026 3.974 19 N -0.843 5.843 20 Si 0.990 3.010 21 H -0.256 1.256 22 H -0.268 1.268 23 H -0.265 1.265 24 C -0.220 4.220 25 C -0.098 4.098 26 C 0.516 3.484 27 O -0.581 6.581 28 N -0.619 5.619 29 H 0.431 0.569 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.126 0.874 39 H 0.094 0.906 40 H 0.417 0.583 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.284 0.716 44 H 0.097 0.903 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.712 6.272 -2.120 31.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 N -0.277 5.277 4 C 0.082 3.918 5 C -0.171 4.171 6 C -0.299 4.299 7 C -0.068 4.068 8 C -0.155 4.155 9 C 0.288 3.712 10 O -0.453 6.453 11 N -0.292 5.292 12 C -0.073 4.073 13 C -0.142 4.142 14 C -0.179 4.179 15 C 0.063 3.937 16 C -0.529 4.529 17 H 0.092 0.908 18 C -0.186 4.186 19 N -0.471 5.471 20 Si 0.811 3.189 21 H -0.181 1.181 22 H -0.193 1.193 23 H -0.190 1.190 24 C -0.240 4.240 25 C -0.118 4.118 26 C 0.316 3.684 27 O -0.463 6.463 28 N -0.258 5.258 29 H 0.273 0.727 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.065 0.935 38 H 0.144 0.856 39 H 0.112 0.888 40 H 0.255 0.745 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.095 0.905 44 H 0.115 0.885 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -30.099 6.350 -2.772 30.887 hybrid contribution 1.282 -1.633 0.146 2.081 sum -28.818 4.717 -2.626 29.319 Atomic orbital electron populations 1.21272 0.80952 1.07395 1.07022 1.24213 0.98327 0.79795 0.83561 1.68282 1.09072 1.24721 1.25585 1.21376 0.88854 0.96191 0.85419 1.20974 1.00355 0.91096 1.04719 1.21127 0.97858 0.92170 1.18713 1.19718 0.88545 1.03150 0.95389 1.21556 0.88497 1.05688 0.99731 1.21405 0.91347 0.75434 0.82978 1.90665 1.71357 1.50258 1.32979 1.42989 1.04355 1.72204 1.09611 1.17376 0.82653 1.04709 1.02611 1.20574 0.94707 0.99005 0.99931 1.21174 0.92814 1.03601 1.00332 1.18052 0.94370 0.91321 0.89968 1.19705 0.92021 0.98673 1.42490 0.90784 1.26781 1.05712 0.94427 0.91674 1.69830 1.39422 1.03679 1.34167 0.85133 0.75651 0.78526 0.79610 1.18053 1.19281 1.19010 1.20941 0.93904 1.07892 1.01253 1.20541 0.93639 0.98979 0.98603 1.17302 0.81903 0.90848 0.78348 1.90992 1.66985 1.34393 1.53961 1.44617 1.08588 1.12142 1.60429 0.72749 0.86045 0.86789 0.86791 0.88543 0.88348 0.89622 0.89242 0.93496 0.85640 0.88782 0.74548 0.85971 0.86338 0.90503 0.88475 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.15 10.24 71.24 0.73 0.88 16 2 C 0.40 3.79 7.71 138.19 1.07 4.86 16 3 N -0.55 -7.92 10.22 -175.72 -1.80 -9.72 16 4 C 0.20 3.55 6.77 41.83 0.28 3.84 16 5 C -0.11 -1.52 9.38 71.24 0.67 -0.85 16 6 C -0.29 -6.67 5.17 -19.66 -0.10 -6.77 16 7 C -0.03 -0.79 3.75 29.85 0.11 -0.67 16 8 C -0.11 -2.92 5.62 29.85 0.17 -2.75 16 9 C 0.50 17.70 7.66 87.66 0.67 18.38 16 10 O -0.57 -25.67 13.40 -3.03 -0.04 -25.71 16 11 N -0.65 -22.76 5.30 -303.11 -1.61 -24.37 16 12 C 0.02 0.92 6.31 38.56 0.24 1.16 16 13 C -0.12 -5.75 9.90 22.13 0.22 -5.53 16 14 C -0.16 -8.65 8.62 22.48 0.19 -8.45 16 15 C 0.07 3.73 5.55 -21.28 -0.12 3.61 16 16 C -0.50 -28.20 9.03 23.39 0.21 -27.99 16 17 H 0.07 4.02 7.85 -2.91 -0.02 4.00 16 18 C 0.03 1.36 5.42 85.24 0.46 1.82 16 19 N -0.84 -46.06 10.60 21.82 0.23 -45.83 16 20 Si 0.99 40.32 29.56 68.60 2.03 42.35 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 23 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 24 C -0.22 -11.89 9.74 22.48 0.22 -11.67 16 25 C -0.10 -4.90 8.61 22.13 0.19 -4.71 16 26 C 0.52 12.48 7.74 84.89 0.66 13.14 16 27 O -0.58 -19.42 17.27 -5.28 -0.09 -19.51 16 28 N -0.62 -8.11 5.25 -310.69 -1.63 -9.74 16 29 H 0.43 3.07 8.78 -92.71 -0.81 2.25 16 30 H 0.12 -0.53 8.14 -2.39 -0.02 -0.55 16 31 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.11 -0.68 8.14 -2.39 -0.02 -0.70 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 1.17 6.30 -2.38 -0.02 1.16 16 36 H 0.09 2.27 6.43 -2.39 -0.02 2.25 16 37 H 0.05 1.63 7.78 -2.39 -0.02 1.61 16 38 H 0.13 2.22 7.88 -2.39 -0.02 2.20 16 39 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.42 10.97 8.82 -92.70 -0.82 10.15 16 41 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 42 H 0.12 6.68 6.13 -2.91 -0.02 6.66 16 43 H 0.28 14.16 8.30 -92.71 -0.77 13.39 16 44 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 45 H 0.11 5.45 6.22 -2.91 -0.02 5.43 16 Total: -1.00 -83.49 379.58 2.40 -81.09 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: -0.57 Total: 33.15 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 5.87 Total: -21.71 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -4.80 Total: -89.66 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -0.13 Total: -45.23 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -83.49 2.40 -81.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057812854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.588 kcal (2) G-P(sol) polarization free energy of solvation -83.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds