Wall clock time and date at job start Sat Apr 11 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35919 * 117.00143 * 2 1 4 4 C 1.38608 * 120.08176 * 359.97314 * 3 2 1 5 5 C 1.38200 * 120.00828 * 179.97438 * 4 3 2 6 6 C 1.38313 * 120.18993 * 359.77280 * 5 4 3 7 7 C 1.50700 * 119.91395 * 180.27540 * 6 5 4 8 8 C 1.38144 * 120.17674 * 0.51329 * 6 5 4 9 9 C 1.38773 * 119.98218 * 359.46000 * 8 6 5 10 10 N 1.40154 * 120.09335 * 180.30384 * 9 8 6 11 11 C 1.35850 * 124.95274 * 359.71990 * 10 9 8 12 12 C 1.35356 * 107.14313 * 179.83866 * 11 10 9 13 13 C 1.41560 * 105.55974 * 0.40726 * 12 11 10 14 14 C 1.47530 * 126.45195 * 179.70660 * 13 12 11 15 15 O 1.21619 * 120.00427 * 354.46590 * 14 13 12 16 16 N 1.34777 * 119.99749 * 174.47046 * 14 13 12 17 17 C 1.36906 * 119.99819 * 185.37079 * 16 14 13 18 18 H 1.08001 * 119.99745 * 224.76866 * 17 16 14 19 19 C 1.39022 * 120.00027 * 44.76562 * 17 16 14 20 20 N 1.31373 * 120.00033 * 6.86148 * 19 17 16 21 21 Si 1.86798 * 120.00027 * 186.86051 * 19 17 16 22 22 H 1.48508 * 109.47137 * 59.99841 * 21 19 17 23 23 H 1.48496 * 109.47586 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47258 * 300.00288 * 21 19 17 25 25 C 1.46498 * 120.00171 * 5.36796 * 16 14 13 26 26 C 1.53001 * 117.49697 * 182.14123 * 25 16 14 27 27 C 1.52997 * 59.99995 * 252.50980 * 26 25 16 28 28 N 1.28479 * 124.95143 * 180.02562 * 10 9 8 29 29 H 1.09003 * 109.47314 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47337 * 299.99907 * 1 2 3 31 31 H 1.08996 * 109.47208 * 60.00657 * 1 2 3 32 32 H 1.08002 * 119.99962 * 0.02994 * 4 3 2 33 33 H 1.08008 * 119.90555 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47044 * 270.23517 * 7 6 5 35 35 H 1.08998 * 109.47303 * 30.22921 * 7 6 5 36 36 H 1.08997 * 109.47356 * 150.23955 * 7 6 5 37 37 H 1.07995 * 120.01189 * 179.73943 * 8 6 5 38 38 H 1.07997 * 126.42982 * 359.97438 * 11 10 9 39 39 H 1.08003 * 127.21624 * 180.15387 * 12 11 10 40 40 H 0.97003 * 119.99846 * 184.99613 * 20 19 17 41 41 H 1.08999 * 115.55098 * 327.84814 * 25 16 14 42 42 H 1.09001 * 117.50036 * 0.02562 * 26 25 16 43 43 H 1.09007 * 117.49502 * 145.02005 * 26 25 16 44 44 H 1.09002 * 117.49821 * 252.50869 * 27 26 25 45 45 H 1.09002 * 117.51654 * 107.48367 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2928 2.3746 -0.0006 5 6 1.9219 3.6051 0.0000 6 6 3.3029 3.6803 0.0058 7 6 3.9824 5.0254 0.0126 8 6 4.0612 2.5256 0.0004 9 6 3.4372 1.2861 0.0005 10 7 4.2043 0.1131 0.0015 11 6 5.5621 0.0712 -0.0030 12 6 5.9210 -1.2340 0.0034 13 6 4.7067 -1.9617 0.0022 14 6 4.5648 -3.4301 0.0015 15 8 5.5499 -4.1362 -0.0996 16 7 3.3436 -3.9892 0.1129 17 6 3.2203 -5.3482 0.2230 18 1 2.4744 -5.8715 -0.3569 19 6 4.0554 -6.0547 1.0811 20 7 4.8693 -5.4088 1.8850 21 14 4.0200 -7.9223 1.0911 22 1 4.3777 -8.4314 -0.2574 23 1 4.9974 -8.4306 2.0868 24 1 2.6572 -8.3897 1.4511 25 6 2.1479 -3.1426 0.1162 26 6 0.7943 -3.8326 0.2959 27 6 1.1900 -3.2684 -1.0701 28 7 3.7258 -1.0792 0.0011 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 0.2142 2.3196 -0.0005 33 1 1.3333 4.5108 0.0000 34 1 4.1466 5.3548 -1.0134 35 1 3.3515 5.7485 0.5296 36 1 4.9404 4.9460 0.5264 37 1 5.1394 2.5874 0.0008 38 1 6.2300 0.9198 -0.0083 39 1 6.9235 -1.6358 0.0046 40 1 5.5028 -5.9002 2.4310 41 1 2.2725 -2.1548 0.5599 42 1 0.7933 -4.9164 0.4121 43 1 0.0280 -3.2988 0.8581 44 1 0.6840 -2.3635 -1.4066 45 1 1.4495 -3.9808 -1.8532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065894489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:42 Heat of formation + Delta-G solvation = 102.769742 kcal Electronic energy + Delta-G solvation = -30501.432127 eV Core-core repulsion = 26488.976213 eV Total energy + Delta-G solvation = -4012.455914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.27420 -40.08672 -38.20591 -37.72959 -35.77362 -33.68794 -32.64651 -31.96203 -30.88683 -30.24192 -29.19969 -27.90792 -26.08863 -25.35045 -23.64812 -22.58146 -21.49828 -21.22858 -20.65006 -20.13308 -19.16071 -18.40013 -17.15302 -16.54512 -16.08883 -16.02505 -15.84542 -15.18349 -14.77649 -14.65402 -14.55012 -14.19174 -13.90582 -13.87251 -13.59646 -13.17031 -12.99958 -12.82088 -12.40337 -12.32497 -12.30051 -12.16135 -11.83915 -11.59388 -11.23195 -11.00741 -10.96030 -10.83801 -10.75034 -10.56247 -10.30748 -10.04682 -9.75133 -9.72456 -9.14935 -8.66960 -8.64173 -8.60139 -8.06437 -7.64354 -6.89009 -5.95877 -3.80449 0.79310 1.13185 2.53578 2.79552 2.93595 3.22006 3.37017 3.41663 3.43469 3.57451 4.34162 4.39415 4.56216 4.72881 4.75536 4.83266 4.94948 5.01127 5.10457 5.11098 5.13541 5.20625 5.30864 5.35127 5.36999 5.49552 5.51728 5.56779 5.66308 5.84785 5.95635 6.02466 6.03224 6.08158 6.18707 6.27983 6.37449 6.42377 6.45476 6.49163 6.66146 6.97329 7.07453 7.13624 7.36959 7.54858 7.69015 8.36561 8.58378 9.16453 9.31224 9.73925 10.44013 11.07678 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.003668 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.918946 B = 7632.004238 C = 8902.508206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.272 6.272 3 C 0.130 3.870 4 C -0.189 4.189 5 C -0.090 4.090 6 C -0.105 4.105 7 C -0.107 4.107 8 C -0.100 4.100 9 C 0.125 3.875 10 N -0.250 5.250 11 C -0.039 4.039 12 C -0.174 4.174 13 C 0.031 3.969 14 C 0.555 3.445 15 O -0.522 6.522 16 N -0.415 5.415 17 C -0.331 4.331 18 H 0.079 0.921 19 C 0.058 3.942 20 N -0.828 5.828 21 Si 0.915 3.085 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.081 3.919 26 C -0.186 4.186 27 C -0.202 4.202 28 N -0.247 5.247 29 H 0.105 0.895 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.137 0.863 33 H 0.128 0.872 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.137 0.863 38 H 0.173 0.827 39 H 0.160 0.840 40 H 0.265 0.735 41 H 0.145 0.855 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.052 21.070 -2.814 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.183 6.183 3 C 0.081 3.919 4 C -0.208 4.208 5 C -0.108 4.108 6 C -0.106 4.106 7 C -0.164 4.164 8 C -0.121 4.121 9 C 0.032 3.968 10 N -0.031 5.031 11 C -0.177 4.177 12 C -0.202 4.202 13 C -0.132 4.132 14 C 0.341 3.659 15 O -0.398 6.398 16 N -0.135 5.135 17 C -0.459 4.459 18 H 0.097 0.903 19 C -0.152 4.152 20 N -0.463 5.463 21 Si 0.742 3.258 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.202 1.202 25 C -0.025 4.025 26 C -0.224 4.224 27 C -0.241 4.241 28 N -0.079 5.079 29 H 0.124 0.876 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.155 0.845 38 H 0.190 0.810 39 H 0.177 0.823 40 H 0.075 0.925 41 H 0.162 0.838 42 H 0.120 0.880 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.504 20.580 -2.659 22.066 hybrid contribution 0.617 -0.770 0.106 0.992 sum -6.887 19.810 -2.553 21.128 Atomic orbital electron populations 1.23191 0.78991 1.04614 1.00731 1.86511 1.20460 1.24152 1.87184 1.18669 0.90046 0.86010 0.97137 1.21142 1.00263 0.91493 1.07939 1.20846 0.93815 0.97128 0.99044 1.19543 0.93411 0.94826 1.02845 1.20710 1.00422 0.92920 1.02365 1.20539 1.00369 0.89036 1.02155 1.16990 0.87520 0.84163 1.08087 1.42771 1.04194 1.03879 1.52237 1.22787 0.84587 0.99427 1.10944 1.21811 0.99937 0.91095 1.07341 1.23135 0.89796 0.96045 1.04214 1.16496 0.84577 0.82367 0.82444 1.90608 1.37241 1.60811 1.51113 1.42567 1.02001 1.05210 1.63679 1.18906 1.22555 0.80971 1.23451 0.90325 1.25332 0.96761 0.99325 0.93752 1.69844 1.18636 1.36308 1.21465 0.86234 0.77594 0.83991 0.78005 1.20050 1.21120 1.20235 1.22430 0.83528 0.96669 0.99866 1.23078 0.98607 1.01553 0.99134 1.23163 1.06557 1.01911 0.92493 1.74094 1.25263 0.88283 1.20222 0.87637 0.92845 0.92847 0.84566 0.85412 0.91186 0.91447 0.91461 0.84495 0.80957 0.82280 0.92457 0.83811 0.87983 0.90351 0.90137 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.65 101.05 0.98 1.18 16 2 O -0.27 -4.11 7.42 -19.49 -0.14 -4.26 16 3 C 0.13 1.81 6.69 -39.04 -0.26 1.55 16 4 C -0.19 -1.96 9.04 -39.46 -0.36 -2.31 16 5 C -0.09 -0.80 9.69 -39.57 -0.38 -1.18 16 6 C -0.11 -0.97 5.88 -104.63 -0.62 -1.58 16 7 C -0.11 -0.67 10.01 36.01 0.36 -0.31 16 8 C -0.10 -1.13 9.08 -39.42 -0.36 -1.48 16 9 C 0.13 1.85 6.67 -83.45 -0.56 1.30 16 10 N -0.25 -4.49 3.52 -10.45 -0.04 -4.53 16 11 C -0.04 -0.64 10.78 -16.80 -0.18 -0.82 16 12 C -0.17 -3.53 10.80 -39.34 -0.43 -3.95 16 13 C 0.03 0.74 6.88 -82.77 -0.57 0.18 16 14 C 0.56 15.79 6.77 -12.47 -0.08 15.71 16 15 O -0.52 -16.48 14.61 5.26 0.08 -16.41 16 16 N -0.41 -11.40 2.85 -108.90 -0.31 -11.71 16 17 C -0.33 -9.49 7.95 -15.00 -0.12 -9.61 16 18 H 0.08 2.16 7.18 -52.49 -0.38 1.78 16 19 C 0.06 1.70 4.75 -17.46 -0.08 1.61 16 20 N -0.83 -25.50 11.13 55.50 0.62 -24.88 16 21 Si 0.91 22.27 29.56 -169.99 -5.03 17.25 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 C 0.08 1.86 5.49 -67.93 -0.37 1.48 16 26 C -0.19 -3.66 9.80 -26.73 -0.26 -3.92 16 27 C -0.20 -3.92 10.37 -26.73 -0.28 -4.19 16 28 N -0.25 -5.29 6.58 33.41 0.22 -5.07 16 29 H 0.11 1.09 7.45 -51.93 -0.39 0.71 16 30 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 31 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 32 H 0.14 1.08 6.30 -52.49 -0.33 0.75 16 33 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 36 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 37 H 0.14 1.25 6.65 -52.49 -0.35 0.91 16 38 H 0.17 1.97 6.96 -52.49 -0.37 1.60 16 39 H 0.16 3.04 8.06 -52.48 -0.42 2.62 16 40 H 0.27 7.80 8.31 -40.82 -0.34 7.47 16 41 H 0.15 3.28 4.11 -51.93 -0.21 3.07 16 42 H 0.10 2.17 6.70 -51.93 -0.35 1.82 16 43 H 0.08 1.30 8.14 -51.92 -0.42 0.87 16 44 H 0.08 1.34 7.28 -51.93 -0.38 0.96 16 45 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -36.81 370.25 -8.22 -45.04 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.63 Total: 5.34 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -3.57 Total: -6.35 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.49 Total: -46.19 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.07 Total: -20.66 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.81 -8.22 -45.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.808 kcal (2) G-P(sol) polarization free energy of solvation -36.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds