Wall clock time and date at job start Sat Apr 11 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35919 * 117.00143 * 2 1 4 4 C 1.38608 * 120.08176 * 359.97314 * 3 2 1 5 5 C 1.38200 * 120.00828 * 179.97438 * 4 3 2 6 6 C 1.38313 * 120.18993 * 359.77280 * 5 4 3 7 7 C 1.50700 * 119.91395 * 180.27540 * 6 5 4 8 8 C 1.38144 * 120.17674 * 0.51329 * 6 5 4 9 9 C 1.38773 * 119.98218 * 359.46000 * 8 6 5 10 10 N 1.40154 * 120.09335 * 180.30384 * 9 8 6 11 11 C 1.35850 * 124.95274 * 359.71990 * 10 9 8 12 12 C 1.35356 * 107.14313 * 179.83866 * 11 10 9 13 13 C 1.41560 * 105.55974 * 0.40726 * 12 11 10 14 14 C 1.47530 * 126.45195 * 179.70660 * 13 12 11 15 15 O 1.21619 * 120.00427 * 354.46590 * 14 13 12 16 16 N 1.34777 * 119.99749 * 174.47046 * 14 13 12 17 17 C 1.36906 * 119.99819 * 185.37079 * 16 14 13 18 18 H 1.08001 * 119.99745 * 224.76866 * 17 16 14 19 19 C 1.39022 * 120.00027 * 44.76562 * 17 16 14 20 20 N 1.31373 * 120.00033 * 6.86148 * 19 17 16 21 21 Si 1.86798 * 120.00027 * 186.86051 * 19 17 16 22 22 H 1.48508 * 109.47137 * 59.99841 * 21 19 17 23 23 H 1.48496 * 109.47586 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47258 * 300.00288 * 21 19 17 25 25 C 1.46498 * 120.00171 * 5.36796 * 16 14 13 26 26 C 1.53001 * 117.49697 * 182.14123 * 25 16 14 27 27 C 1.52997 * 59.99995 * 252.50980 * 26 25 16 28 28 N 1.28479 * 124.95143 * 180.02562 * 10 9 8 29 29 H 1.09003 * 109.47314 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47337 * 299.99907 * 1 2 3 31 31 H 1.08996 * 109.47208 * 60.00657 * 1 2 3 32 32 H 1.08002 * 119.99962 * 0.02994 * 4 3 2 33 33 H 1.08008 * 119.90555 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47044 * 270.23517 * 7 6 5 35 35 H 1.08998 * 109.47303 * 30.22921 * 7 6 5 36 36 H 1.08997 * 109.47356 * 150.23955 * 7 6 5 37 37 H 1.07995 * 120.01189 * 179.73943 * 8 6 5 38 38 H 1.07997 * 126.42982 * 359.97438 * 11 10 9 39 39 H 1.08003 * 127.21624 * 180.15387 * 12 11 10 40 40 H 0.97003 * 119.99846 * 184.99613 * 20 19 17 41 41 H 1.08999 * 115.55098 * 327.84814 * 25 16 14 42 42 H 1.09001 * 117.50036 * 0.02562 * 26 25 16 43 43 H 1.09007 * 117.49502 * 145.02005 * 26 25 16 44 44 H 1.09002 * 117.49821 * 252.50869 * 27 26 25 45 45 H 1.09002 * 117.51654 * 107.48367 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2928 2.3746 -0.0006 5 6 1.9219 3.6051 0.0000 6 6 3.3029 3.6803 0.0058 7 6 3.9824 5.0254 0.0126 8 6 4.0612 2.5256 0.0004 9 6 3.4372 1.2861 0.0005 10 7 4.2043 0.1131 0.0015 11 6 5.5621 0.0712 -0.0030 12 6 5.9210 -1.2340 0.0034 13 6 4.7067 -1.9617 0.0022 14 6 4.5648 -3.4301 0.0015 15 8 5.5499 -4.1362 -0.0996 16 7 3.3436 -3.9892 0.1129 17 6 3.2203 -5.3482 0.2230 18 1 2.4744 -5.8715 -0.3569 19 6 4.0554 -6.0547 1.0811 20 7 4.8693 -5.4088 1.8850 21 14 4.0200 -7.9223 1.0911 22 1 4.3777 -8.4314 -0.2574 23 1 4.9974 -8.4306 2.0868 24 1 2.6572 -8.3897 1.4511 25 6 2.1479 -3.1426 0.1162 26 6 0.7943 -3.8326 0.2959 27 6 1.1900 -3.2684 -1.0701 28 7 3.7258 -1.0792 0.0011 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 0.2142 2.3196 -0.0005 33 1 1.3333 4.5108 0.0000 34 1 4.1466 5.3548 -1.0134 35 1 3.3515 5.7485 0.5296 36 1 4.9404 4.9460 0.5264 37 1 5.1394 2.5874 0.0008 38 1 6.2300 0.9198 -0.0083 39 1 6.9235 -1.6358 0.0046 40 1 5.5028 -5.9002 2.4310 41 1 2.2725 -2.1548 0.5599 42 1 0.7933 -4.9164 0.4121 43 1 0.0280 -3.2988 0.8581 44 1 0.6840 -2.3635 -1.4066 45 1 1.4495 -3.9808 -1.8532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065894489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:41 Heat of formation + Delta-G solvation = 79.656368 kcal Electronic energy + Delta-G solvation = -30502.434398 eV Core-core repulsion = 26488.976213 eV Total energy + Delta-G solvation = -4013.458185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.69051 -41.03181 -40.10198 -38.64211 -37.66844 -35.00012 -34.58498 -32.96285 -32.61075 -31.70839 -30.46266 -28.70310 -27.33904 -26.77058 -25.05596 -23.90046 -23.09821 -22.78346 -21.89968 -21.46890 -20.93205 -19.44189 -18.56796 -17.98582 -17.77643 -17.16858 -17.07039 -16.71612 -16.35448 -15.94973 -15.72707 -15.45829 -15.29053 -14.88859 -14.83143 -14.56241 -14.43309 -14.39552 -13.84440 -13.67752 -13.16197 -13.03491 -12.96004 -12.85396 -12.82951 -12.72015 -12.42373 -12.23781 -12.15983 -11.94775 -11.75323 -11.74694 -11.56589 -10.96104 -10.83428 -10.75197 -10.16379 -10.09779 -9.56791 -8.98620 -8.74765 -8.12420 -6.03619 -0.17496 0.32524 1.11752 1.37548 1.40565 1.46638 1.50647 1.56711 2.33325 2.38943 2.68947 2.86550 3.11709 3.14771 3.39130 3.51917 3.78000 3.87007 3.96994 4.11125 4.18005 4.28615 4.32090 4.37575 4.43117 4.43539 4.44346 4.59077 4.65313 4.75459 4.81810 4.82953 4.87588 4.91223 4.96356 5.04428 5.08795 5.24852 5.27056 5.37983 5.43746 5.47500 5.56689 5.64251 5.76144 6.06291 6.21100 6.51337 6.97954 7.04618 7.26759 7.64759 8.35196 8.90695 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.003668 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.918946 B = 7632.004238 C = 8902.508206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.309 6.309 3 C 0.110 3.890 4 C -0.188 4.188 5 C -0.075 4.075 6 C -0.104 4.104 7 C -0.107 4.107 8 C -0.094 4.094 9 C 0.069 3.931 10 N -0.238 5.238 11 C -0.010 4.010 12 C -0.205 4.205 13 C -0.022 4.022 14 C 0.541 3.459 15 O -0.577 6.577 16 N -0.430 5.430 17 C -0.348 4.348 18 H 0.083 0.917 19 C 0.003 3.997 20 N -0.870 5.870 21 Si 0.984 3.016 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.254 1.254 25 C 0.048 3.952 26 C -0.170 4.170 27 C -0.177 4.177 28 N -0.246 5.246 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.157 0.843 38 H 0.228 0.772 39 H 0.156 0.844 40 H 0.260 0.740 41 H 0.146 0.854 42 H 0.084 0.916 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.286 25.148 -3.104 26.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.221 6.221 3 C 0.062 3.938 4 C -0.207 4.207 5 C -0.093 4.093 6 C -0.105 4.105 7 C -0.163 4.163 8 C -0.114 4.114 9 C -0.021 4.021 10 N -0.020 5.020 11 C -0.149 4.149 12 C -0.233 4.233 13 C -0.183 4.183 14 C 0.329 3.671 15 O -0.457 6.457 16 N -0.149 5.149 17 C -0.476 4.476 18 H 0.100 0.900 19 C -0.203 4.203 20 N -0.506 5.506 21 Si 0.807 3.193 22 H -0.202 1.202 23 H -0.210 1.210 24 H -0.178 1.178 25 C -0.057 4.057 26 C -0.207 4.207 27 C -0.215 4.215 28 N -0.079 5.079 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.179 0.821 33 H 0.182 0.818 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.174 0.826 38 H 0.245 0.755 39 H 0.174 0.826 40 H 0.069 0.931 41 H 0.163 0.837 42 H 0.102 0.898 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.821 24.684 -2.956 26.730 hybrid contribution 1.144 -1.640 0.137 2.004 sum -8.677 23.044 -2.819 24.784 Atomic orbital electron populations 1.23403 0.77167 1.05102 1.02561 1.86442 1.22642 1.25489 1.87563 1.19049 0.90162 0.86798 0.97786 1.21465 1.01404 0.90792 1.07037 1.21375 0.94129 0.97861 0.95928 1.19986 0.93782 0.95494 1.01201 1.20794 1.00837 0.91233 1.03452 1.20889 1.01651 0.88220 1.00676 1.17589 0.88201 0.83789 1.12558 1.43096 1.05194 1.03938 1.49742 1.23387 0.84587 0.99356 1.07603 1.21912 0.99016 0.92617 1.09765 1.22622 0.92181 0.94515 1.08944 1.17154 0.84294 0.84334 0.81286 1.90521 1.38798 1.62797 1.53555 1.42814 1.03326 1.05440 1.63342 1.19235 1.22699 0.82311 1.23378 0.89963 1.26323 0.96240 1.04400 0.93296 1.70009 1.19793 1.38006 1.22790 0.85180 0.78593 0.77822 0.77688 1.20177 1.21013 1.17776 1.22584 0.83146 0.96700 1.03302 1.23135 0.97368 1.00703 0.99535 1.23112 1.04427 1.02528 0.91462 1.73950 1.24788 0.89302 1.19898 0.87923 0.91129 0.90815 0.82149 0.81799 0.90051 0.89750 0.90770 0.82576 0.75542 0.82610 0.93064 0.83705 0.89792 0.86640 0.86911 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.65 113.37 1.09 1.32 16 2 O -0.31 -9.01 7.42 -92.64 -0.69 -9.70 16 3 C 0.11 2.85 6.69 22.62 0.15 3.01 16 4 C -0.19 -3.18 9.04 22.35 0.20 -2.98 16 5 C -0.07 -0.95 9.69 22.28 0.22 -0.74 16 6 C -0.10 -1.43 5.88 -19.87 -0.12 -1.55 16 7 C -0.11 -0.77 10.01 71.24 0.71 -0.05 16 8 C -0.09 -1.80 9.08 22.38 0.20 -1.59 16 9 C 0.07 1.94 6.67 38.20 0.25 2.19 16 10 N -0.24 -8.49 3.52 -186.99 -0.66 -9.14 16 11 C -0.01 -0.31 10.78 83.41 0.90 0.59 16 12 C -0.21 -8.75 10.80 22.42 0.24 -8.51 16 13 C -0.02 -1.15 6.88 42.40 0.29 -0.86 16 14 C 0.54 33.11 6.77 86.69 0.59 33.70 16 15 O -0.58 -39.43 14.61 -4.09 -0.06 -39.49 16 16 N -0.43 -25.03 2.85 -616.70 -1.76 -26.79 16 17 C -0.35 -20.98 7.95 84.09 0.67 -20.31 16 18 H 0.08 4.71 7.18 -2.91 -0.02 4.69 16 19 C 0.00 0.17 4.75 84.95 0.40 0.57 16 20 N -0.87 -56.90 11.13 21.68 0.24 -56.66 16 21 Si 0.98 47.62 29.56 68.60 2.03 49.65 16 22 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 23 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.25 -11.19 7.11 99.48 0.71 -10.49 16 25 C 0.05 2.25 5.49 44.99 0.25 2.50 16 26 C -0.17 -6.64 9.80 30.59 0.30 -6.34 16 27 C -0.18 -6.83 10.37 30.59 0.32 -6.52 16 28 N -0.25 -10.84 6.58 -48.20 -0.32 -11.16 16 29 H 0.10 1.91 7.45 -2.39 -0.02 1.89 16 30 H 0.07 1.03 7.66 -2.39 -0.02 1.01 16 31 H 0.07 1.03 7.66 -2.39 -0.02 1.01 16 32 H 0.16 1.83 6.30 -2.91 -0.02 1.81 16 33 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 34 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.08 0.37 8.09 -2.39 -0.02 0.35 16 36 H 0.07 0.48 8.08 -2.39 -0.02 0.46 16 37 H 0.16 2.21 6.65 -2.91 -0.02 2.19 16 38 H 0.23 4.43 6.96 -2.91 -0.02 4.41 16 39 H 0.16 6.46 8.06 -2.91 -0.02 6.44 16 40 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 41 H 0.15 6.83 4.11 -2.39 -0.01 6.82 16 42 H 0.08 3.61 6.70 -2.39 -0.02 3.59 16 43 H 0.12 3.60 8.14 -2.38 -0.02 3.58 16 44 H 0.11 3.59 7.28 -2.39 -0.02 3.57 16 45 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -89.79 370.25 6.49 -83.30 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 1.03 Total: 25.59 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 6.67 Total: -5.59 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -2.49 Total: -103.76 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -0.75 Total: -49.19 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -89.79 6.49 -83.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.956 kcal (2) G-P(sol) polarization free energy of solvation -89.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds