Wall clock time and date at job start Sat Apr 11 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39757 * 125.84165 * 2 1 4 4 C 1.36112 * 107.82856 * 179.97438 * 3 2 1 5 5 N 1.39467 * 126.21224 * 179.97438 * 4 3 2 6 6 C 1.34771 * 120.00372 * 0.03359 * 5 4 3 7 7 O 1.21291 * 120.00070 * 359.97438 * 6 5 4 8 8 C 1.50709 * 120.00184 * 179.97438 * 6 5 4 9 9 H 1.08997 * 109.72216 * 300.57087 * 8 6 5 10 10 C 1.53405 * 109.69068 * 61.14378 * 8 6 5 11 11 O 1.42831 * 108.37479 * 184.39417 * 10 8 6 12 12 C 1.35855 * 117.77235 * 310.48060 * 11 10 8 13 13 C 1.39144 * 118.49515 * 196.82947 * 12 11 10 14 14 C 1.37973 * 120.21556 * 180.72505 * 13 12 11 15 15 C 1.38293 * 119.95552 * 0.26685 * 14 13 12 16 16 C 1.38107 * 119.98337 * 359.89042 * 15 14 13 17 17 C 1.38370 * 121.79955 * 17.95067 * 12 11 10 18 18 C 1.50775 * 121.40187 * 358.75599 * 17 12 11 19 19 N 1.35263 * 107.56498 * 0.26570 * 4 3 2 20 20 C 1.46500 * 126.04338 * 179.73499 * 19 4 3 21 21 C 1.50698 * 109.47037 * 90.00015 * 20 19 4 22 22 H 1.07994 * 120.00012 * 0.02562 * 21 20 19 23 23 C 1.37878 * 119.99628 * 180.02562 * 21 20 19 24 24 N 1.31517 * 120.00401 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99777 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47286 * 89.99603 * 25 23 21 27 27 H 1.48496 * 109.46862 * 209.99793 * 25 23 21 28 28 H 1.48500 * 109.46747 * 329.99826 * 25 23 21 29 29 N 1.30854 * 125.83346 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47241 * 89.99905 * 1 2 3 31 31 H 1.08999 * 109.47184 * 209.99998 * 1 2 3 32 32 H 1.08995 * 109.47043 * 329.99766 * 1 2 3 33 33 H 1.07998 * 126.07973 * 0.02562 * 3 2 1 34 34 H 0.97007 * 119.99942 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.68063 * 304.10828 * 10 8 6 36 36 H 1.08991 * 109.68640 * 64.67424 * 10 8 6 37 37 H 1.08002 * 119.89570 * 1.00949 * 13 12 11 38 38 H 1.07997 * 120.02385 * 180.23978 * 14 13 12 39 39 H 1.07996 * 120.00593 * 179.91790 * 15 14 13 40 40 H 1.08006 * 119.83788 * 180.02562 * 16 15 14 41 41 H 1.09001 * 109.43177 * 138.23309 * 18 17 12 42 42 H 1.08998 * 109.43245 * 258.13969 * 18 17 12 43 43 H 1.08999 * 109.47211 * 210.00881 * 20 19 4 44 44 H 1.09009 * 109.47299 * 330.00245 * 20 19 4 45 45 H 0.96994 * 119.99803 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6197 0.7120 0.0006 5 7 4.7513 1.5273 0.0003 6 6 4.6158 2.8682 0.0000 7 8 3.5097 3.3660 -0.0004 8 6 5.8385 3.7492 0.0003 9 1 6.4417 3.5410 0.8839 10 6 6.6658 3.4856 -1.2644 11 8 7.8656 4.2567 -1.1865 12 6 7.7519 5.5752 -0.8795 13 6 8.8315 6.4132 -1.1408 14 6 8.7600 7.7554 -0.8293 15 6 7.6143 8.2698 -0.2503 16 6 6.5421 7.4404 0.0135 17 6 6.6077 6.0924 -0.2980 18 6 5.4146 5.2200 -0.0003 19 7 3.6092 -0.6406 -0.0051 20 6 4.7869 -1.5118 -0.0120 21 6 5.1948 -1.8164 1.4064 22 1 4.6327 -1.4029 2.2305 23 6 6.2856 -2.6232 1.6518 24 7 6.9699 -3.1273 0.6481 25 14 6.7908 -3.0015 3.4100 26 1 6.0925 -4.2277 3.8728 27 1 8.2590 -3.2162 3.4678 28 1 6.4223 -1.8612 4.2870 29 7 2.2731 -1.0609 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.9902 2.1596 0.0004 34 1 5.6359 1.1293 0.0004 35 1 6.9138 2.4260 -1.3266 36 1 6.0955 3.7820 -2.1446 37 1 9.7266 6.0126 -1.5933 38 1 9.5984 8.4037 -1.0371 39 1 7.5580 9.3200 -0.0049 40 1 5.6483 7.8447 0.4654 41 1 5.0095 5.4810 0.9774 42 1 4.6515 5.3767 -0.7626 43 1 4.5484 -2.4411 -0.5292 44 1 5.6070 -1.0102 -0.5261 45 1 7.7375 -3.6945 0.8209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068219424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:51 Heat of formation + Delta-G solvation = 23.443815 kcal Electronic energy + Delta-G solvation = -29003.874212 eV Core-core repulsion = 24987.978468 eV Total energy + Delta-G solvation = -4015.895744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.34414 -40.68014 -39.23954 -37.65915 -34.89197 -34.44472 -33.82616 -32.13561 -31.15136 -30.46855 -29.17888 -28.23352 -26.11465 -25.96425 -24.83126 -22.96554 -22.78823 -21.79134 -20.26807 -19.80617 -19.21833 -18.09394 -17.36277 -16.91991 -16.65035 -16.39437 -15.81176 -15.56903 -15.15100 -14.83596 -14.59462 -14.45981 -14.15667 -14.01419 -13.76919 -13.57270 -13.35780 -13.19571 -12.90446 -12.80865 -12.55158 -12.10216 -12.03408 -11.81899 -11.73497 -11.61375 -11.40508 -11.12090 -11.10616 -10.92727 -10.83325 -10.47366 -10.37349 -9.97702 -9.85403 -9.58182 -9.02227 -8.75497 -8.39579 -7.97988 -7.51731 -6.37020 -4.45839 1.07280 1.18973 2.09879 2.65866 2.97439 3.05552 3.14934 3.21985 3.25853 3.50923 3.53454 3.70304 4.18289 4.21477 4.31530 4.42521 4.58998 4.70493 4.82536 4.91739 4.96473 5.09263 5.17636 5.23605 5.30079 5.31789 5.42069 5.59636 5.67223 5.71656 5.83451 5.99069 6.04325 6.11191 6.11809 6.19351 6.22998 6.29067 6.35020 6.52389 6.59539 6.77863 6.99082 7.18520 7.43538 7.51074 7.56916 7.75227 7.81784 8.17495 8.56840 8.66010 9.22217 10.70087 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010047 B = 0.003183 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.154369 B = 8794.485216 C =10835.103879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.294 4.294 4 C 0.299 3.701 5 N -0.638 5.638 6 C 0.529 3.471 7 O -0.507 6.507 8 C -0.142 4.142 9 H 0.119 0.881 10 C 0.071 3.929 11 O -0.306 6.306 12 C 0.127 3.873 13 C -0.147 4.147 14 C -0.091 4.091 15 C -0.152 4.152 16 C -0.083 4.083 17 C -0.154 4.154 18 C -0.059 4.059 19 N -0.343 5.343 20 C 0.256 3.744 21 C -0.542 4.542 22 H 0.065 0.935 23 C 0.068 3.932 24 N -0.889 5.889 25 Si 0.906 3.094 26 H -0.276 1.276 27 H -0.282 1.282 28 H -0.272 1.272 29 N -0.283 5.283 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.161 0.839 34 H 0.417 0.583 35 H 0.116 0.884 36 H 0.075 0.925 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.268 19.777 -3.879 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.326 4.326 4 C 0.077 3.923 5 N -0.285 5.285 6 C 0.314 3.686 7 O -0.381 6.381 8 C -0.164 4.164 9 H 0.137 0.863 10 C -0.005 4.005 11 O -0.220 6.220 12 C 0.082 3.918 13 C -0.165 4.165 14 C -0.109 4.109 15 C -0.171 4.171 16 C -0.101 4.101 17 C -0.155 4.155 18 C -0.096 4.096 19 N -0.129 5.129 20 C 0.139 3.861 21 C -0.581 4.581 22 H 0.083 0.917 23 C -0.136 4.136 24 N -0.526 5.526 25 Si 0.733 3.267 26 H -0.202 1.202 27 H -0.208 1.208 28 H -0.197 1.197 29 N -0.109 5.109 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.179 0.821 34 H 0.254 0.746 35 H 0.134 0.866 36 H 0.093 0.907 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.006 18.562 -3.977 19.010 hybrid contribution 0.852 0.180 1.089 1.394 sum 1.858 18.742 -2.889 19.054 Atomic orbital electron populations 1.20020 0.87546 1.02476 1.02065 1.22040 0.96548 0.91021 1.01844 1.21264 0.89042 1.00452 1.21835 1.17914 0.87918 0.83393 1.03095 1.42802 1.08445 1.05531 1.71675 1.20102 0.90738 0.81273 0.76437 1.90649 1.26426 1.73654 1.47357 1.21990 0.95971 0.96342 1.02099 0.86337 1.22979 0.84773 0.96650 0.96062 1.86078 1.32604 1.17922 1.85388 1.18770 0.94306 0.83381 0.95325 1.20615 0.98562 0.92831 1.04539 1.20934 0.98035 0.94254 0.97665 1.21027 0.93925 0.99953 1.02158 1.20908 0.98722 0.92022 0.98460 1.19853 0.96018 0.95705 1.03947 1.20322 0.95117 0.89643 1.04504 1.49378 1.06583 1.02147 1.54756 1.19633 0.77762 0.89770 0.98972 1.21333 1.13319 1.32089 0.91327 0.91707 1.24934 0.95665 0.94841 0.98185 1.69910 1.19191 1.32595 1.30955 0.86355 0.77686 0.79122 0.83563 1.20179 1.20790 1.19686 1.77373 0.86108 1.21784 1.25602 0.91347 0.91472 0.91134 0.82150 0.74622 0.86558 0.90650 0.85153 0.85476 0.85882 0.85620 0.89058 0.88883 0.92492 0.93839 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.01 0.38 -0.53 16 2 C 0.05 0.99 7.21 -82.44 -0.59 0.40 16 3 C -0.29 -5.87 9.58 -39.78 -0.38 -6.25 16 4 C 0.30 6.12 7.66 -153.16 -1.17 4.94 16 5 N -0.64 -10.56 5.30 -11.46 -0.06 -10.62 16 6 C 0.53 7.75 7.12 -10.98 -0.08 7.67 16 7 O -0.51 -8.60 12.92 5.55 0.07 -8.52 16 8 C -0.14 -1.61 2.76 -91.52 -0.25 -1.87 16 9 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 10 C 0.07 0.76 6.26 37.37 0.23 0.99 16 11 O -0.31 -3.65 10.28 -19.28 -0.20 -3.85 16 12 C 0.13 1.46 6.47 -39.20 -0.25 1.20 16 13 C -0.15 -1.47 9.94 -39.34 -0.39 -1.86 16 14 C -0.09 -0.77 10.04 -39.66 -0.40 -1.16 16 15 C -0.15 -1.27 10.04 -39.61 -0.40 -1.67 16 16 C -0.08 -0.77 9.67 -39.53 -0.38 -1.15 16 17 C -0.15 -1.65 5.75 -104.44 -0.60 -2.25 16 18 C -0.06 -0.63 4.67 -27.81 -0.13 -0.76 16 19 N -0.34 -7.89 3.60 -61.57 -0.22 -8.11 16 20 C 0.26 6.28 6.01 -5.19 -0.03 6.25 16 21 C -0.54 -14.38 9.39 -34.44 -0.32 -14.71 16 22 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 23 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -24.02 13.29 55.43 0.74 -23.28 16 25 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 N -0.28 -6.51 12.57 33.65 0.42 -6.08 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.16 3.09 5.83 -52.49 -0.31 2.78 16 34 H 0.42 6.37 7.44 -40.82 -0.30 6.07 16 35 H 0.12 1.13 7.57 -51.93 -0.39 0.73 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.09 1.03 7.69 -51.93 -0.40 0.63 16 43 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.04 1.02 7.50 -51.92 -0.39 0.63 16 45 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -31.47 378.62 -9.43 -40.90 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.99 Total: 7.41 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -4.87 Total: -9.06 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.88 Total: -48.09 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.13 Total: -12.38 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.47 -9.43 -40.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068219424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.342 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds