Wall clock time and date at job start Sat Apr 11 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39757 * 125.84165 * 2 1 4 4 C 1.36112 * 107.82856 * 179.97438 * 3 2 1 5 5 N 1.39467 * 126.21224 * 179.97438 * 4 3 2 6 6 C 1.34771 * 120.00372 * 0.03359 * 5 4 3 7 7 O 1.21291 * 120.00070 * 359.97438 * 6 5 4 8 8 C 1.50709 * 120.00184 * 179.97438 * 6 5 4 9 9 H 1.08997 * 109.72216 * 300.57087 * 8 6 5 10 10 C 1.53405 * 109.69068 * 61.14378 * 8 6 5 11 11 O 1.42831 * 108.37479 * 184.39417 * 10 8 6 12 12 C 1.35855 * 117.77235 * 310.48060 * 11 10 8 13 13 C 1.39144 * 118.49515 * 196.82947 * 12 11 10 14 14 C 1.37973 * 120.21556 * 180.72505 * 13 12 11 15 15 C 1.38293 * 119.95552 * 0.26685 * 14 13 12 16 16 C 1.38107 * 119.98337 * 359.89042 * 15 14 13 17 17 C 1.38370 * 121.79955 * 17.95067 * 12 11 10 18 18 C 1.50775 * 121.40187 * 358.75599 * 17 12 11 19 19 N 1.35263 * 107.56498 * 0.26570 * 4 3 2 20 20 C 1.46500 * 126.04338 * 179.73499 * 19 4 3 21 21 C 1.50698 * 109.47037 * 90.00015 * 20 19 4 22 22 H 1.07994 * 120.00012 * 0.02562 * 21 20 19 23 23 C 1.37878 * 119.99628 * 180.02562 * 21 20 19 24 24 N 1.31517 * 120.00401 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99777 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47286 * 89.99603 * 25 23 21 27 27 H 1.48496 * 109.46862 * 209.99793 * 25 23 21 28 28 H 1.48500 * 109.46747 * 329.99826 * 25 23 21 29 29 N 1.30854 * 125.83346 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47241 * 89.99905 * 1 2 3 31 31 H 1.08999 * 109.47184 * 209.99998 * 1 2 3 32 32 H 1.08995 * 109.47043 * 329.99766 * 1 2 3 33 33 H 1.07998 * 126.07973 * 0.02562 * 3 2 1 34 34 H 0.97007 * 119.99942 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.68063 * 304.10828 * 10 8 6 36 36 H 1.08991 * 109.68640 * 64.67424 * 10 8 6 37 37 H 1.08002 * 119.89570 * 1.00949 * 13 12 11 38 38 H 1.07997 * 120.02385 * 180.23978 * 14 13 12 39 39 H 1.07996 * 120.00593 * 179.91790 * 15 14 13 40 40 H 1.08006 * 119.83788 * 180.02562 * 16 15 14 41 41 H 1.09001 * 109.43177 * 138.23309 * 18 17 12 42 42 H 1.08998 * 109.43245 * 258.13969 * 18 17 12 43 43 H 1.08999 * 109.47211 * 210.00881 * 20 19 4 44 44 H 1.09009 * 109.47299 * 330.00245 * 20 19 4 45 45 H 0.96994 * 119.99803 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6197 0.7120 0.0006 5 7 4.7513 1.5273 0.0003 6 6 4.6158 2.8682 0.0000 7 8 3.5097 3.3660 -0.0004 8 6 5.8385 3.7492 0.0003 9 1 6.4417 3.5410 0.8839 10 6 6.6658 3.4856 -1.2644 11 8 7.8656 4.2567 -1.1865 12 6 7.7519 5.5752 -0.8795 13 6 8.8315 6.4132 -1.1408 14 6 8.7600 7.7554 -0.8293 15 6 7.6143 8.2698 -0.2503 16 6 6.5421 7.4404 0.0135 17 6 6.6077 6.0924 -0.2980 18 6 5.4146 5.2200 -0.0003 19 7 3.6092 -0.6406 -0.0051 20 6 4.7869 -1.5118 -0.0120 21 6 5.1948 -1.8164 1.4064 22 1 4.6327 -1.4029 2.2305 23 6 6.2856 -2.6232 1.6518 24 7 6.9699 -3.1273 0.6481 25 14 6.7908 -3.0015 3.4100 26 1 6.0925 -4.2277 3.8728 27 1 8.2590 -3.2162 3.4678 28 1 6.4223 -1.8612 4.2870 29 7 2.2731 -1.0609 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.9902 2.1596 0.0004 34 1 5.6359 1.1293 0.0004 35 1 6.9138 2.4260 -1.3266 36 1 6.0955 3.7820 -2.1446 37 1 9.7266 6.0126 -1.5933 38 1 9.5984 8.4037 -1.0371 39 1 7.5580 9.3200 -0.0049 40 1 5.6483 7.8447 0.4654 41 1 5.0095 5.4810 0.9774 42 1 4.6515 5.3767 -0.7626 43 1 4.5484 -2.4411 -0.5292 44 1 5.6070 -1.0102 -0.5261 45 1 7.7375 -3.6945 0.8209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068219424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:50 Heat of formation + Delta-G solvation = 6.036020 kcal Electronic energy + Delta-G solvation = -29004.629071 eV Core-core repulsion = 24987.978468 eV Total energy + Delta-G solvation = -4016.650603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.60172 -41.83844 -40.48162 -38.43052 -36.35337 -35.66020 -35.35511 -33.86287 -32.03378 -31.19441 -30.73593 -29.74292 -27.83136 -26.81717 -25.85001 -24.74138 -23.58193 -22.95306 -21.42567 -21.23029 -20.46464 -18.91465 -18.88356 -18.58146 -18.05827 -17.42125 -16.79908 -16.70838 -16.60590 -16.08238 -15.98939 -15.67456 -15.32871 -15.07456 -14.75302 -14.59794 -14.46813 -14.35286 -14.24075 -14.06125 -13.91427 -13.59387 -13.40267 -13.12963 -12.91972 -12.74842 -12.72782 -12.51499 -12.31449 -12.19563 -11.97189 -11.92307 -11.71082 -11.67184 -11.43196 -10.96863 -10.78070 -9.73819 -9.66069 -9.15682 -9.10736 -8.38250 -6.55636 0.36279 0.46528 0.70196 1.25604 1.34988 1.37330 1.47287 1.55056 2.00712 2.09955 2.23026 2.33225 2.80525 2.92459 3.20681 3.36263 3.50282 3.81199 3.82028 3.90111 4.00360 4.21696 4.27677 4.31377 4.38273 4.49830 4.58621 4.59646 4.68171 4.70480 4.79744 4.84092 4.84565 4.89431 4.93791 4.95725 5.10615 5.19587 5.22373 5.34417 5.49302 5.52377 5.61179 5.75074 5.85516 5.94084 6.09170 6.21434 6.39675 6.54465 6.83661 7.00138 7.16604 8.68099 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010047 B = 0.003183 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.154369 B = 8794.485216 C =10835.103879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.058 3.942 3 C -0.305 4.305 4 C 0.298 3.702 5 N -0.637 5.637 6 C 0.535 3.465 7 O -0.526 6.526 8 C -0.130 4.130 9 H 0.127 0.873 10 C 0.072 3.928 11 O -0.318 6.318 12 C 0.101 3.899 13 C -0.160 4.160 14 C -0.089 4.089 15 C -0.151 4.151 16 C -0.090 4.090 17 C -0.166 4.166 18 C -0.053 4.053 19 N -0.366 5.366 20 C 0.272 3.728 21 C -0.557 4.557 22 H 0.047 0.953 23 C 0.029 3.971 24 N -0.912 5.912 25 Si 0.967 3.033 26 H -0.276 1.276 27 H -0.269 1.269 28 H -0.271 1.271 29 N -0.330 5.330 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.170 0.830 34 H 0.421 0.579 35 H 0.123 0.877 36 H 0.079 0.921 37 H 0.137 0.863 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.142 0.858 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.027 0.973 44 H 0.050 0.950 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.610 21.924 -3.163 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.337 4.337 4 C 0.076 3.924 5 N -0.285 5.285 6 C 0.323 3.677 7 O -0.401 6.401 8 C -0.152 4.152 9 H 0.144 0.856 10 C -0.004 4.004 11 O -0.232 6.232 12 C 0.056 3.944 13 C -0.179 4.179 14 C -0.107 4.107 15 C -0.169 4.169 16 C -0.108 4.108 17 C -0.167 4.167 18 C -0.091 4.091 19 N -0.152 5.152 20 C 0.153 3.847 21 C -0.595 4.595 22 H 0.065 0.935 23 C -0.173 4.173 24 N -0.550 5.550 25 Si 0.791 3.209 26 H -0.202 1.202 27 H -0.194 1.194 28 H -0.196 1.196 29 N -0.155 5.155 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.187 0.813 34 H 0.259 0.741 35 H 0.141 0.859 36 H 0.097 0.903 37 H 0.154 0.846 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.160 0.840 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.045 0.955 44 H 0.067 0.933 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.358 20.734 -3.271 21.034 hybrid contribution 0.712 -0.357 0.823 1.145 sum 2.070 20.377 -2.447 20.628 Atomic orbital electron populations 1.20225 0.83908 1.03896 1.03892 1.22900 0.98756 0.90078 0.99004 1.21488 0.88952 1.00879 1.22340 1.18299 0.89454 0.82836 1.01832 1.42979 1.07719 1.05903 1.71874 1.20676 0.91519 0.80572 0.74971 1.90625 1.27634 1.73771 1.48054 1.21944 0.94316 0.96003 1.02891 0.85558 1.23001 0.84657 0.97034 0.95700 1.86060 1.32863 1.18532 1.85768 1.19067 0.95322 0.83330 0.96652 1.20876 0.98524 0.93599 1.04874 1.21304 0.98965 0.93859 0.96566 1.21401 0.93321 1.01173 1.01004 1.21191 0.99810 0.91548 0.98288 1.19903 0.95679 0.96425 1.04702 1.20274 0.95223 0.89020 1.04539 1.49180 1.06336 1.02870 1.56787 1.19230 0.78627 0.89058 0.97760 1.21405 1.13660 1.32754 0.91682 0.93475 1.25657 0.95408 0.94342 1.01897 1.69979 1.19514 1.32808 1.32705 0.85419 0.77883 0.78626 0.78955 1.20203 1.19373 1.19588 1.77325 0.86407 1.23635 1.28128 0.89189 0.90950 0.88773 0.81264 0.74065 0.85928 0.90296 0.84557 0.82786 0.83243 0.84018 0.88675 0.89451 0.95461 0.93254 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.66 10.44 71.24 0.74 -0.92 16 2 C 0.06 2.27 7.21 43.07 0.31 2.58 16 3 C -0.30 -12.11 9.58 22.14 0.21 -11.89 16 4 C 0.30 12.37 7.66 131.32 1.01 13.37 16 5 N -0.64 -21.28 5.30 -308.56 -1.63 -22.92 16 6 C 0.54 15.54 7.12 87.66 0.62 16.16 16 7 O -0.53 -17.58 12.92 -3.06 -0.04 -17.62 16 8 C -0.13 -2.88 2.76 -11.38 -0.03 -2.91 16 9 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 10 C 0.07 1.51 6.26 72.12 0.45 1.96 16 11 O -0.32 -7.51 10.28 -91.92 -0.94 -8.45 16 12 C 0.10 2.24 6.47 22.52 0.15 2.38 16 13 C -0.16 -3.01 9.94 22.42 0.22 -2.79 16 14 C -0.09 -1.28 10.04 22.22 0.22 -1.06 16 15 C -0.15 -2.10 10.04 22.25 0.22 -1.88 16 16 C -0.09 -1.50 9.67 22.30 0.22 -1.28 16 17 C -0.17 -3.38 5.75 -19.75 -0.11 -3.49 16 18 C -0.05 -1.10 4.67 29.89 0.14 -0.96 16 19 N -0.37 -17.34 3.60 -348.71 -1.26 -18.59 16 20 C 0.27 13.84 6.01 85.63 0.51 14.35 16 21 C -0.56 -30.23 9.39 25.60 0.24 -29.99 16 22 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 23 C 0.03 1.53 5.46 84.65 0.46 1.99 16 24 N -0.91 -49.62 13.29 21.45 0.28 -49.34 16 25 Si 0.97 42.03 29.54 68.60 2.03 44.05 16 26 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 29 N -0.33 -15.48 12.57 -47.45 -0.60 -16.07 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.17 6.39 5.83 -2.91 -0.02 6.37 16 34 H 0.42 13.11 7.44 -92.70 -0.69 12.42 16 35 H 0.12 2.37 7.57 -2.39 -0.02 2.35 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 39 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 40 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 41 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.09 1.89 7.69 -2.39 -0.02 1.87 16 43 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.05 2.40 7.50 -2.38 -0.02 2.38 16 45 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -68.24 378.62 3.77 -64.48 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 0.34 Total: 28.83 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 5.59 Total: -4.37 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -3.20 Total: -106.92 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.98 Total: -26.07 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -68.24 3.77 -64.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068219424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.515 kcal (2) G-P(sol) polarization free energy of solvation -68.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds