Wall clock time and date at job start Sat Apr 11 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38289 * 119.97233 * 2 1 4 4 C 1.38238 * 120.11164 * 180.02562 * 3 2 1 5 5 C 1.38161 * 120.05714 * 359.68224 * 4 3 2 6 6 C 1.38714 * 119.94046 * 0.57130 * 5 4 3 7 7 O 1.35904 * 120.05460 * 179.72502 * 6 5 4 8 8 C 1.42898 * 117.00247 * 359.72498 * 7 6 5 9 9 C 1.53005 * 109.47445 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.46939 * 185.00189 * 9 8 7 11 11 C 1.53003 * 109.46700 * 304.99614 * 9 8 7 12 12 N 1.46499 * 109.47071 * 64.99833 * 9 8 7 13 13 S 1.65593 * 119.99833 * 145.00407 * 12 9 8 14 14 O 1.42104 * 104.27905 * 308.92754 * 13 12 9 15 15 O 1.42102 * 104.27718 * 181.06534 * 13 12 9 16 16 C 1.81399 * 104.45079 * 64.99683 * 13 12 9 17 17 C 1.53005 * 109.47445 * 179.97438 * 16 13 12 18 18 C 1.52996 * 109.47245 * 179.97438 * 17 16 13 19 19 C 1.50703 * 109.46946 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99876 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99789 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00287 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99733 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47151 * 90.00298 * 23 21 19 25 25 H 1.48507 * 109.47197 * 210.00055 * 23 21 19 26 26 H 1.48498 * 109.47171 * 330.00226 * 23 21 19 27 27 C 1.38121 * 119.97359 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47020 * 270.02336 * 1 2 3 29 29 H 1.09005 * 109.46575 * 30.02246 * 1 2 3 30 30 H 1.08999 * 109.47171 * 150.01976 * 1 2 3 31 31 H 1.08005 * 119.94554 * 359.97438 * 3 2 1 32 32 H 1.08006 * 119.97204 * 179.97438 * 4 3 2 33 33 H 1.08006 * 120.03281 * 180.29312 * 5 4 3 34 34 H 1.08999 * 109.47123 * 59.99779 * 8 7 6 35 35 H 1.09002 * 109.47147 * 300.00022 * 8 7 6 36 36 H 1.08996 * 109.46994 * 300.00244 * 11 9 8 37 37 H 1.09007 * 109.46559 * 60.00207 * 11 9 8 38 38 H 1.08998 * 109.47034 * 179.97438 * 11 9 8 39 39 H 0.97001 * 119.99882 * 324.99879 * 12 9 8 40 40 H 1.09001 * 109.47190 * 299.99797 * 16 13 12 41 41 H 1.09004 * 109.47089 * 59.99930 * 16 13 12 42 42 H 1.09001 * 109.46962 * 300.00183 * 17 16 13 43 43 H 1.09004 * 109.46832 * 60.00020 * 17 16 13 44 44 H 1.09001 * 109.47372 * 300.00032 * 18 17 16 45 45 H 1.09004 * 109.47108 * 60.00288 * 18 17 16 46 46 H 0.96996 * 120.00180 * 180.02562 * 22 21 19 47 47 H 1.08001 * 120.02585 * 0.02814 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0072 0.0056 6 6 3.5846 -1.1958 0.0002 7 8 4.2658 -2.3717 0.0006 8 6 5.6927 -2.2949 0.0004 9 6 6.2796 -3.7079 0.0002 10 1 7.3644 -3.6507 0.0897 11 6 5.7113 -4.4963 1.1819 12 7 5.9277 -4.3827 -1.2516 13 16 6.9949 -5.4374 -1.9520 14 8 8.2151 -4.7118 -2.0142 15 8 6.3369 -5.8673 -3.1359 16 6 7.1264 -6.8031 -0.7653 17 6 8.0960 -7.8564 -1.3051 18 6 8.2074 -9.0079 -0.3039 19 6 9.1629 -10.0450 -0.8353 20 1 9.6430 -9.8974 -1.7915 21 6 9.4248 -11.1819 -0.1005 22 7 8.8406 -11.3614 1.0639 23 14 10.6087 -12.4678 -0.7597 24 1 11.9858 -12.1542 -0.3010 25 1 10.2131 -13.8083 -0.2578 26 1 10.5683 -12.4632 -2.2441 27 6 2.1971 -1.1965 0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6566 2.1325 -0.0004 32 1 4.1176 2.1382 -0.0010 33 1 5.3552 0.0103 0.0099 34 1 6.0280 -1.7620 0.8902 35 1 6.0278 -1.7626 -0.8898 36 1 5.9731 -3.9942 2.1132 37 1 4.6264 -4.5534 1.0924 38 1 6.1290 -5.5031 1.1815 39 1 5.0695 -4.2116 -1.6701 40 1 7.4960 -6.4226 0.1870 41 1 6.1447 -7.2540 -0.6200 42 1 7.7260 -8.2368 -2.2572 43 1 9.0778 -7.4058 -1.4507 44 1 8.5776 -8.6272 0.6481 45 1 7.2257 -9.4586 -0.1579 46 1 9.0252 -12.1610 1.5810 47 1 1.6571 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068898179.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:04 Heat of formation + Delta-G solvation = -110.824443 kcal Electronic energy + Delta-G solvation = -26881.726561 eV Core-core repulsion = 22963.159708 eV Total energy + Delta-G solvation = -3918.566853 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.55334 -38.40943 -36.95545 -36.14884 -35.74971 -34.69021 -32.86007 -32.20838 -30.98165 -29.92232 -27.94582 -27.54502 -26.75676 -23.72396 -22.88141 -22.46276 -20.89215 -20.64920 -19.35496 -18.24125 -17.49074 -17.02663 -16.56758 -16.34261 -16.16488 -15.75770 -15.67761 -15.03293 -14.65058 -14.49237 -14.30029 -14.09376 -13.96802 -13.67307 -13.53129 -13.04278 -12.80121 -12.53144 -12.47955 -12.28042 -12.10775 -11.96161 -11.89982 -11.87069 -11.78650 -11.68112 -11.36879 -11.24587 -11.13765 -11.09900 -10.92073 -10.81938 -10.43034 -9.95726 -9.80516 -9.34646 -9.14203 -9.09844 -8.51055 -8.41405 -6.06374 -4.09403 0.44729 0.96445 1.11733 2.71039 2.88830 3.29989 3.36184 3.40326 3.40790 3.92998 4.23230 4.34531 4.41952 4.44183 4.51388 4.62474 4.69626 4.82532 4.86728 4.92667 4.98636 5.06195 5.12970 5.15588 5.21859 5.22629 5.29984 5.33310 5.36379 5.53090 5.57917 5.72432 5.85017 5.89900 5.96603 6.07512 6.12668 6.23980 6.25969 6.43202 6.44357 6.85706 6.90644 7.09257 7.56099 7.66052 7.91610 8.32121 8.96818 9.55360 11.04779 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.025168 B = 0.001903 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.252820 B =14711.719232 C =15040.246750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.049 4.049 3 C -0.162 4.162 4 C -0.076 4.076 5 C -0.216 4.216 6 C 0.137 3.863 7 O -0.308 6.308 8 C 0.056 3.944 9 C 0.150 3.850 10 H 0.112 0.888 11 C -0.181 4.181 12 N -1.118 6.118 13 S 2.599 3.401 14 O -0.964 6.964 15 O -0.962 6.962 16 C -0.610 4.610 17 C -0.106 4.106 18 C 0.031 3.969 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.894 3.106 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 C -0.154 4.154 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.419 0.581 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.020 0.980 45 H 0.021 0.979 46 H 0.261 0.739 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.354 26.074 1.458 29.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.049 4.049 3 C -0.181 4.181 4 C -0.095 4.095 5 C -0.235 4.235 6 C 0.092 3.908 7 O -0.221 6.221 8 C -0.021 4.021 9 C 0.043 3.957 10 H 0.130 0.870 11 C -0.240 4.240 12 N -0.876 5.876 13 S 2.695 3.305 14 O -0.954 6.954 15 O -0.952 6.952 16 C -0.742 4.742 17 C -0.145 4.145 18 C -0.008 4.008 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.173 4.173 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.253 0.747 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.071 0.929 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.841 25.875 0.833 29.356 hybrid contribution 0.285 -0.783 0.288 0.882 sum -13.556 25.092 1.121 28.542 Atomic orbital electron populations 1.20820 0.90739 1.03063 1.02608 1.19721 0.96084 0.92287 0.96775 1.20941 0.94183 0.97551 1.05386 1.20929 0.94175 0.97436 0.96913 1.21284 1.00388 0.92308 1.09523 1.18986 0.91724 0.84708 0.95411 1.86055 1.19831 1.27892 1.88330 1.23125 0.78599 0.97883 1.02516 1.20926 1.00052 0.90335 0.84426 0.87047 1.22432 1.03336 1.01047 0.97152 1.55773 1.34821 1.60967 1.36025 1.05348 0.73680 0.75765 0.75713 1.93566 1.45407 1.69887 1.86501 1.93583 1.74710 1.82811 1.44116 1.30661 1.10309 1.16700 1.16497 1.21507 0.95763 0.95951 1.01308 1.19061 0.97503 0.90838 0.93348 1.21256 1.26045 1.04085 1.05084 0.92372 1.25020 0.96233 0.98230 0.94911 1.69954 1.43144 1.27822 1.12479 0.86554 0.81153 0.80778 0.79305 1.20580 1.21177 1.19753 1.20314 0.90929 0.98707 1.07337 0.90849 0.91308 0.91222 0.86054 0.85836 0.85425 0.90515 0.90879 0.91158 0.90721 0.91142 0.74668 0.85382 0.85121 0.91566 0.91579 0.96131 0.96100 0.92904 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.01 36.01 0.36 -0.26 16 2 C -0.05 -0.38 5.88 -104.64 -0.62 -0.99 16 3 C -0.16 -1.20 9.70 -39.56 -0.38 -1.58 16 4 C -0.08 -0.57 10.04 -39.61 -0.40 -0.97 16 5 C -0.22 -1.81 9.04 -39.43 -0.36 -2.16 16 6 C 0.14 1.30 6.69 -39.22 -0.26 1.04 16 7 O -0.31 -2.91 8.97 -19.44 -0.17 -3.09 16 8 C 0.06 0.45 4.53 37.16 0.17 0.61 16 9 C 0.15 1.36 3.21 -67.93 -0.22 1.14 16 10 H 0.11 0.95 7.48 -51.93 -0.39 0.56 16 11 C -0.18 -1.56 9.28 37.16 0.34 -1.22 16 12 N -1.12 -11.99 5.35 -4.89 -0.03 -12.02 16 13 S 2.60 37.35 5.44 -107.50 -0.58 36.77 16 14 O -0.96 -16.31 17.39 -57.54 -1.00 -17.31 16 15 O -0.96 -16.93 18.08 -57.54 -1.04 -17.97 16 16 C -0.61 -9.12 5.22 37.16 0.19 -8.92 16 17 C -0.11 -2.12 5.16 -26.73 -0.14 -2.25 16 18 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 19 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 20 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 23 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 27 C -0.15 -1.38 9.64 -39.44 -0.38 -1.76 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 30 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 32 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 33 H 0.13 0.87 6.30 -52.48 -0.33 0.54 16 34 H 0.08 0.47 7.65 -51.93 -0.40 0.07 16 35 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.67 7.56 -51.93 -0.39 0.28 16 38 H 0.07 0.64 5.78 -51.93 -0.30 0.34 16 39 H 0.42 4.12 8.54 -34.47 -0.29 3.83 16 40 H 0.13 1.66 6.77 -51.92 -0.35 1.31 16 41 H 0.13 1.77 8.14 -51.92 -0.42 1.34 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 398.46 15.07 6.00 6.00 Total: -1.00 -35.48 398.46 -10.80 -46.28 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.46 Total: 0.76 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: -2.23 Total: -30.24 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.71 Total: -37.73 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -2.22 Total: -38.37 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 37.35 SS G_CDS: -0.58 Total: 36.77 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.48 -10.80 -46.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068898179.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.541 kcal (2) G-P(sol) polarization free energy of solvation -35.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds