Wall clock time and date at job start Sat Apr 11 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38261 * 119.94283 * 2 1 4 4 C 1.38150 * 120.05505 * 180.02562 * 3 2 1 5 5 C 1.38722 * 119.94337 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05600 * 180.02562 * 5 4 3 7 7 C 1.42899 * 116.99755 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.46855 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47050 * 174.99922 * 8 7 6 10 10 C 1.52997 * 109.47164 * 54.99918 * 8 7 6 11 11 N 1.46500 * 109.46998 * 294.99868 * 8 7 6 12 12 S 1.65600 * 120.00050 * 215.00259 * 11 8 7 13 13 O 1.42105 * 104.27693 * 181.07034 * 12 11 8 14 14 O 1.42098 * 104.27525 * 308.92492 * 12 11 8 15 15 C 1.81399 * 104.44918 * 65.00036 * 12 11 8 16 16 C 1.53008 * 109.46905 * 180.02562 * 15 12 11 17 17 C 1.52997 * 109.46973 * 179.97438 * 16 15 12 18 18 C 1.50702 * 109.47023 * 179.97438 * 17 16 15 19 19 H 1.07992 * 119.99731 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99896 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00241 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99752 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47317 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47087 * 120.00524 * 22 20 18 25 25 H 1.48508 * 109.47102 * 240.00220 * 22 20 18 26 26 C 1.38739 * 119.89016 * 0.27779 * 5 4 3 27 27 C 1.38141 * 119.94051 * 359.42845 * 26 5 4 28 28 H 1.09003 * 109.46592 * 90.00347 * 1 2 3 29 29 H 1.08996 * 109.47428 * 210.00110 * 1 2 3 30 30 H 1.08996 * 109.47032 * 330.00218 * 1 2 3 31 31 H 1.07999 * 119.97401 * 359.97283 * 3 2 1 32 32 H 1.08001 * 120.02319 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47442 * 59.99830 * 7 6 5 34 34 H 1.09007 * 109.47471 * 299.99685 * 7 6 5 35 35 H 1.09001 * 109.47375 * 59.99966 * 10 8 7 36 36 H 1.09002 * 109.46777 * 180.02562 * 10 8 7 37 37 H 1.09000 * 109.47140 * 299.99948 * 10 8 7 38 38 H 0.97009 * 119.99791 * 34.99739 * 11 8 7 39 39 H 1.09007 * 109.47129 * 299.99799 * 15 12 11 40 40 H 1.08999 * 109.47376 * 60.00206 * 15 12 11 41 41 H 1.08997 * 109.47083 * 299.99966 * 16 15 12 42 42 H 1.08999 * 109.46976 * 59.99911 * 16 15 12 43 43 H 1.08997 * 109.47476 * 300.00079 * 17 16 15 44 44 H 1.09007 * 109.47042 * 59.99950 * 17 16 15 45 45 H 0.96993 * 120.00163 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.02678 * 179.72358 * 26 5 4 47 47 H 1.08002 * 119.97379 * 180.27430 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5787 1.2008 -0.0005 5 6 4.2734 0.0001 -0.0005 6 8 5.6325 0.0001 -0.0005 7 6 6.2812 -1.2732 -0.0011 8 6 7.7980 -1.0727 -0.0004 9 1 8.2923 -2.0401 0.0888 10 6 8.1948 -0.1864 1.1820 11 7 8.2062 -0.4293 -1.2516 12 16 9.6542 -0.8237 -1.9516 13 8 9.7200 -0.0008 -3.1083 14 8 10.6004 -0.6867 -0.9003 15 6 9.4707 -2.5665 -2.4200 16 6 10.7596 -3.0543 -3.0848 17 6 10.6051 -4.5245 -3.4792 18 6 11.8743 -5.0048 -4.1346 19 1 12.7079 -4.3291 -4.2570 20 6 11.9717 -6.3071 -4.5769 21 7 10.9568 -7.1300 -4.4273 22 14 13.5452 -6.9026 -5.3886 23 1 14.5291 -5.7913 -5.4358 24 1 14.1102 -8.0304 -4.6050 25 1 13.2474 -7.3597 -6.7698 26 6 3.5786 -1.2008 -0.0058 27 6 2.1972 -1.1981 0.0009 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6558 2.1326 -0.0004 32 1 4.1172 2.1369 -0.0001 33 1 5.9883 -1.8299 -0.8913 34 1 5.9883 -1.8307 0.8887 35 1 7.8911 -0.6652 2.1129 36 1 9.2753 -0.0433 1.1822 37 1 7.7005 0.7810 1.0928 38 1 7.6281 0.2278 -1.6701 39 1 9.2734 -3.1633 -1.5294 40 1 8.6399 -2.6697 -3.1180 41 1 10.9574 -2.4577 -3.9752 42 1 11.5901 -2.9512 -2.3864 43 1 10.4075 -5.1209 -2.5886 44 1 9.7744 -4.6280 -4.1774 45 1 11.0252 -8.0460 -4.7387 46 1 4.1173 -2.1369 -0.0104 47 1 1.6558 -2.1326 0.0012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068903880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:29 Heat of formation + Delta-G solvation = -111.035899 kcal Electronic energy + Delta-G solvation = -26883.985806 eV Core-core repulsion = 22965.409784 eV Total energy + Delta-G solvation = -3918.576022 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.53174 -38.40758 -36.95225 -36.13661 -35.71521 -34.70242 -32.29448 -32.21461 -31.37698 -30.34596 -27.85474 -27.48058 -26.31488 -23.76484 -23.28265 -21.99366 -21.06799 -20.73069 -19.34466 -18.52476 -17.54565 -16.94807 -16.58955 -16.13173 -15.81986 -15.71028 -15.60346 -15.06827 -14.74514 -14.50367 -14.20395 -14.09437 -13.96128 -13.81870 -13.60112 -12.98103 -12.78381 -12.62099 -12.43939 -12.30906 -12.05296 -11.97356 -11.86236 -11.82226 -11.79556 -11.71455 -11.29522 -11.24621 -11.05119 -11.04020 -10.95189 -10.85062 -10.43627 -9.98419 -9.80392 -9.35318 -9.33307 -9.10516 -8.43506 -8.35452 -6.08295 -4.11191 0.43928 1.01311 1.09598 2.74092 2.88489 3.27821 3.35473 3.40477 3.42227 3.92340 4.25241 4.37352 4.40671 4.49321 4.51904 4.61747 4.62721 4.78410 4.86235 4.91526 5.01522 5.04820 5.12208 5.20569 5.25742 5.28320 5.30353 5.33146 5.38769 5.57702 5.69835 5.71552 5.83625 5.93851 5.96620 6.03045 6.18983 6.23906 6.28394 6.41548 6.45984 6.83901 6.90578 7.10422 7.54091 7.63645 7.89913 8.30352 8.95351 9.53750 11.02976 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.002130 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.685539 B =13143.241128 C =14425.580692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.129 4.129 3 C -0.082 4.082 4 C -0.149 4.149 5 C 0.127 3.873 6 O -0.307 6.307 7 C 0.050 3.950 8 C 0.156 3.844 9 H 0.104 0.896 10 C -0.171 4.171 11 N -1.118 6.118 12 S 2.599 3.401 13 O -0.962 6.962 14 O -0.959 6.959 15 C -0.611 4.611 16 C -0.106 4.106 17 C 0.030 3.970 18 C -0.525 4.525 19 H 0.059 0.941 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.205 4.205 27 C -0.080 4.080 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.419 0.581 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.261 0.739 46 H 0.129 0.871 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.284 14.421 12.754 27.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.129 4.129 3 C -0.100 4.100 4 C -0.167 4.167 5 C 0.082 3.918 6 O -0.221 6.221 7 C -0.027 4.027 8 C 0.049 3.951 9 H 0.121 0.879 10 C -0.229 4.229 11 N -0.876 5.876 12 S 2.695 3.305 13 O -0.952 6.952 14 O -0.949 6.949 15 C -0.743 4.743 16 C -0.145 4.145 17 C -0.008 4.008 18 C -0.564 4.564 19 H 0.077 0.923 20 C -0.144 4.144 21 N -0.535 5.535 22 Si 0.722 3.278 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.224 4.224 27 C -0.098 4.098 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.253 0.747 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.071 0.929 46 H 0.147 0.853 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.350 14.888 12.722 27.530 hybrid contribution 0.018 -1.124 -0.675 1.311 sum -19.331 13.764 12.047 26.613 Atomic orbital electron populations 1.20721 0.91128 1.02585 1.02189 1.19844 0.96241 0.93088 1.03722 1.20847 0.93009 0.97766 0.98368 1.20438 0.93756 0.96392 1.06164 1.19012 0.82394 0.94117 0.96293 1.86057 1.16092 1.31490 1.88453 1.23222 0.92409 0.84467 1.02604 1.20838 0.92094 0.97209 0.84998 0.87874 1.22260 1.03490 1.00753 0.96430 1.55814 1.41774 1.55802 1.34228 1.05385 0.73100 0.77980 0.74051 1.93584 1.85270 1.65488 1.50876 1.93573 1.59631 1.85961 1.55714 1.30582 1.09674 1.22721 1.11319 1.21498 0.91107 1.02640 0.99259 1.19068 0.97563 0.87374 0.96799 1.21294 1.00014 0.96324 1.38754 0.92285 1.25027 0.96600 0.96851 0.95968 1.69961 1.30574 1.05763 1.47155 0.86495 0.83401 0.78803 0.79090 1.19581 1.20943 1.20940 1.21300 0.95430 0.97219 1.08423 1.20849 0.93342 0.97737 0.97875 0.91405 0.91731 0.91722 0.85504 0.85179 0.90797 0.90516 0.91716 0.90498 0.91271 0.74662 0.85664 0.85274 0.91541 0.91508 0.96144 0.96143 0.92948 0.85291 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.01 36.01 0.36 -0.23 16 2 C -0.13 -0.99 5.88 -104.60 -0.62 -1.60 16 3 C -0.08 -0.63 9.69 -39.61 -0.38 -1.01 16 4 C -0.15 -1.31 9.99 -39.43 -0.39 -1.70 16 5 C 0.13 1.20 6.69 -39.22 -0.26 0.94 16 6 O -0.31 -2.90 8.97 -19.44 -0.17 -3.07 16 7 C 0.05 0.39 4.53 37.16 0.17 0.56 16 8 C 0.16 1.41 3.08 -67.93 -0.21 1.20 16 9 H 0.10 0.78 7.15 -51.93 -0.37 0.41 16 10 C -0.17 -1.60 9.32 37.16 0.35 -1.25 16 11 N -1.12 -11.88 5.35 -4.89 -0.03 -11.91 16 12 S 2.60 36.89 5.38 -107.50 -0.58 36.32 16 13 O -0.96 -16.83 18.08 -57.54 -1.04 -17.87 16 14 O -0.96 -16.10 17.11 -57.54 -0.98 -17.08 16 15 C -0.61 -8.95 5.96 37.16 0.22 -8.73 16 16 C -0.11 -2.10 5.16 -26.73 -0.14 -2.23 16 17 C 0.03 0.75 4.97 -27.88 -0.14 0.62 16 18 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 22 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C -0.21 -1.76 9.04 -39.43 -0.36 -2.11 16 27 C -0.08 -0.64 9.69 -39.61 -0.38 -1.02 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 30 H 0.06 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.07 0.53 7.65 -51.93 -0.40 0.13 16 34 H 0.08 0.47 7.67 -51.93 -0.40 0.07 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.85 7.42 -51.93 -0.39 0.47 16 37 H 0.07 0.66 7.56 -51.93 -0.39 0.27 16 38 H 0.42 4.10 8.54 -34.48 -0.29 3.80 16 39 H 0.13 1.56 7.44 -51.92 -0.39 1.17 16 40 H 0.13 1.70 8.14 -51.92 -0.42 1.27 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.13 0.92 6.30 -52.49 -0.33 0.58 16 47 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 400.75 15.07 6.04 6.04 Total: -1.00 -35.49 400.75 -10.81 -46.30 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.57 Total: 0.51 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: -2.20 Total: -30.07 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.71 Total: -37.55 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -2.20 Total: -38.03 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 36.89 SS G_CDS: -0.58 Total: 36.32 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.49 -10.81 -46.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068903880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.733 kcal (2) G-P(sol) polarization free energy of solvation -35.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds