Wall clock time and date at job start Sat Apr 11 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38261 * 119.94283 * 2 1 4 4 C 1.38150 * 120.05505 * 180.02562 * 3 2 1 5 5 C 1.38722 * 119.94337 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05600 * 180.02562 * 5 4 3 7 7 C 1.42899 * 116.99755 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.46855 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47050 * 174.99922 * 8 7 6 10 10 C 1.52997 * 109.47164 * 54.99918 * 8 7 6 11 11 N 1.46500 * 109.46998 * 294.99868 * 8 7 6 12 12 S 1.65600 * 120.00050 * 215.00259 * 11 8 7 13 13 O 1.42105 * 104.27693 * 181.07034 * 12 11 8 14 14 O 1.42098 * 104.27525 * 308.92492 * 12 11 8 15 15 C 1.81399 * 104.44918 * 65.00036 * 12 11 8 16 16 C 1.53008 * 109.46905 * 180.02562 * 15 12 11 17 17 C 1.52997 * 109.46973 * 179.97438 * 16 15 12 18 18 C 1.50702 * 109.47023 * 179.97438 * 17 16 15 19 19 H 1.07992 * 119.99731 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99896 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00241 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99752 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47317 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47087 * 120.00524 * 22 20 18 25 25 H 1.48508 * 109.47102 * 240.00220 * 22 20 18 26 26 C 1.38739 * 119.89016 * 0.27779 * 5 4 3 27 27 C 1.38141 * 119.94051 * 359.42845 * 26 5 4 28 28 H 1.09003 * 109.46592 * 90.00347 * 1 2 3 29 29 H 1.08996 * 109.47428 * 210.00110 * 1 2 3 30 30 H 1.08996 * 109.47032 * 330.00218 * 1 2 3 31 31 H 1.07999 * 119.97401 * 359.97283 * 3 2 1 32 32 H 1.08001 * 120.02319 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47442 * 59.99830 * 7 6 5 34 34 H 1.09007 * 109.47471 * 299.99685 * 7 6 5 35 35 H 1.09001 * 109.47375 * 59.99966 * 10 8 7 36 36 H 1.09002 * 109.46777 * 180.02562 * 10 8 7 37 37 H 1.09000 * 109.47140 * 299.99948 * 10 8 7 38 38 H 0.97009 * 119.99791 * 34.99739 * 11 8 7 39 39 H 1.09007 * 109.47129 * 299.99799 * 15 12 11 40 40 H 1.08999 * 109.47376 * 60.00206 * 15 12 11 41 41 H 1.08997 * 109.47083 * 299.99966 * 16 15 12 42 42 H 1.08999 * 109.46976 * 59.99911 * 16 15 12 43 43 H 1.08997 * 109.47476 * 300.00079 * 17 16 15 44 44 H 1.09007 * 109.47042 * 59.99950 * 17 16 15 45 45 H 0.96993 * 120.00163 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.02678 * 179.72358 * 26 5 4 47 47 H 1.08002 * 119.97379 * 180.27430 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5787 1.2008 -0.0005 5 6 4.2734 0.0001 -0.0005 6 8 5.6325 0.0001 -0.0005 7 6 6.2812 -1.2732 -0.0011 8 6 7.7980 -1.0727 -0.0004 9 1 8.2923 -2.0401 0.0888 10 6 8.1948 -0.1864 1.1820 11 7 8.2062 -0.4293 -1.2516 12 16 9.6542 -0.8237 -1.9516 13 8 9.7200 -0.0008 -3.1083 14 8 10.6004 -0.6867 -0.9003 15 6 9.4707 -2.5665 -2.4200 16 6 10.7596 -3.0543 -3.0848 17 6 10.6051 -4.5245 -3.4792 18 6 11.8743 -5.0048 -4.1346 19 1 12.7079 -4.3291 -4.2570 20 6 11.9717 -6.3071 -4.5769 21 7 10.9568 -7.1300 -4.4273 22 14 13.5452 -6.9026 -5.3886 23 1 14.5291 -5.7913 -5.4358 24 1 14.1102 -8.0304 -4.6050 25 1 13.2474 -7.3597 -6.7698 26 6 3.5786 -1.2008 -0.0058 27 6 2.1972 -1.1981 0.0009 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6558 2.1326 -0.0004 32 1 4.1172 2.1369 -0.0001 33 1 5.9883 -1.8299 -0.8913 34 1 5.9883 -1.8307 0.8887 35 1 7.8911 -0.6652 2.1129 36 1 9.2753 -0.0433 1.1822 37 1 7.7005 0.7810 1.0928 38 1 7.6281 0.2278 -1.6701 39 1 9.2734 -3.1633 -1.5294 40 1 8.6399 -2.6697 -3.1180 41 1 10.9574 -2.4577 -3.9752 42 1 11.5901 -2.9512 -2.3864 43 1 10.4075 -5.1209 -2.5886 44 1 9.7744 -4.6280 -4.1774 45 1 11.0252 -8.0460 -4.7387 46 1 4.1173 -2.1369 -0.0104 47 1 1.6558 -2.1326 0.0012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068903880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:28 Heat of formation + Delta-G solvation = -134.521641 kcal Electronic energy + Delta-G solvation = -26885.004224 eV Core-core repulsion = 22965.409784 eV Total energy + Delta-G solvation = -3919.594440 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.13665 -39.03361 -38.18427 -37.09047 -36.83452 -36.46445 -34.16498 -32.84627 -31.95173 -31.14600 -29.66030 -28.10366 -26.85392 -25.63041 -23.90140 -22.63825 -22.43887 -21.71269 -20.42087 -19.24584 -18.67001 -18.51432 -17.73382 -17.14173 -16.77902 -16.75731 -16.46533 -16.27039 -15.99223 -15.49489 -15.35020 -14.72486 -14.56482 -14.51150 -14.37505 -14.32143 -14.07962 -13.64883 -13.57197 -13.47401 -13.17945 -13.10319 -12.98890 -12.88563 -12.78384 -12.72091 -12.62280 -12.49431 -12.37644 -12.18150 -11.97696 -11.73886 -11.68607 -11.62524 -11.36264 -11.12085 -10.58121 -10.45421 -9.92353 -8.94890 -8.23344 -6.33757 -0.73974 0.42398 0.49691 1.39022 1.40132 1.53063 1.75621 2.22501 2.39373 2.77226 2.83173 3.10368 3.24504 3.57306 3.74994 3.89148 3.94230 3.97930 4.00037 4.10872 4.16905 4.29097 4.35572 4.41107 4.48853 4.52336 4.60807 4.66865 4.72492 4.87101 4.88948 4.95422 4.96371 5.06622 5.12802 5.16710 5.22235 5.38618 5.42252 5.45982 5.47432 5.63733 5.72921 5.79702 5.90842 6.06203 6.19982 6.49338 6.82166 7.35525 8.88198 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.002130 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.685539 B =13143.241128 C =14425.580692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.137 4.137 3 C -0.088 4.088 4 C -0.165 4.165 5 C 0.109 3.891 6 O -0.319 6.319 7 C 0.048 3.952 8 C 0.146 3.854 9 H 0.122 0.878 10 C -0.170 4.170 11 N -1.105 6.105 12 S 2.628 3.372 13 O -0.996 6.996 14 O -0.984 6.984 15 C -0.610 4.610 16 C -0.107 4.107 17 C 0.031 3.969 18 C -0.551 4.551 19 H 0.059 0.941 20 C 0.002 3.998 21 N -0.929 5.929 22 Si 0.962 3.038 23 H -0.265 1.265 24 H -0.276 1.276 25 H -0.277 1.277 26 C -0.214 4.214 27 C -0.091 4.091 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.133 0.867 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.425 0.575 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.006 0.994 44 H 0.002 0.998 45 H 0.265 0.735 46 H 0.141 0.859 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.190 14.326 13.296 28.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.137 4.137 3 C -0.106 4.106 4 C -0.183 4.183 5 C 0.064 3.936 6 O -0.234 6.234 7 C -0.028 4.028 8 C 0.040 3.960 9 H 0.140 0.860 10 C -0.229 4.229 11 N -0.866 5.866 12 S 2.724 3.276 13 O -0.986 6.986 14 O -0.974 6.974 15 C -0.740 4.740 16 C -0.146 4.146 17 C -0.007 4.007 18 C -0.589 4.589 19 H 0.077 0.923 20 C -0.196 4.196 21 N -0.569 5.569 22 Si 0.786 3.214 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.203 1.203 26 C -0.232 4.232 27 C -0.109 4.109 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.163 0.837 32 H 0.151 0.849 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.261 0.739 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.025 0.975 44 H 0.021 0.979 45 H 0.074 0.926 46 H 0.159 0.841 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.255 14.801 13.263 28.377 hybrid contribution 0.212 -1.072 -0.790 1.349 sum -20.043 13.729 12.473 27.309 Atomic orbital electron populations 1.20759 0.89559 1.03462 1.02728 1.20188 0.97546 0.92997 1.02969 1.21124 0.92790 0.98777 0.97890 1.20651 0.94448 0.96561 1.06675 1.19201 0.82467 0.94703 0.97232 1.86029 1.16266 1.32336 1.88723 1.23306 0.91154 0.84290 1.04062 1.21149 0.93371 0.97786 0.83720 0.86045 1.22246 1.02097 1.00927 0.97621 1.55460 1.40714 1.55817 1.34607 1.04314 0.73263 0.77092 0.72975 1.93534 1.86120 1.66440 1.52505 1.93542 1.61300 1.86163 1.56370 1.30517 1.07527 1.23504 1.12492 1.21310 0.94026 0.99482 0.99788 1.18967 0.95796 0.90472 0.95494 1.21779 1.01226 0.96831 1.39107 0.92261 1.25918 0.99988 0.97106 0.96568 1.70064 1.32541 1.06198 1.48084 0.85446 0.79371 0.78399 0.78151 1.18872 1.20188 1.20308 1.21507 0.95889 0.97456 1.08390 1.21143 0.93406 0.98646 0.97675 0.90939 0.90983 0.90786 0.83713 0.84935 0.89943 0.88454 0.89736 0.92413 0.91816 0.73904 0.83126 0.83567 0.91851 0.91378 0.97530 0.97920 0.92642 0.84087 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 71.24 0.71 -0.25 16 2 C -0.14 -1.90 5.88 -19.85 -0.12 -2.01 16 3 C -0.09 -1.26 9.69 22.25 0.22 -1.04 16 4 C -0.16 -2.80 9.99 22.36 0.22 -2.57 16 5 C 0.11 1.96 6.69 22.51 0.15 2.11 16 6 O -0.32 -5.64 8.97 -92.48 -0.83 -6.47 16 7 C 0.05 0.65 4.53 71.98 0.33 0.98 16 8 C 0.15 2.37 3.08 44.99 0.14 2.50 16 9 H 0.12 1.52 7.15 -2.39 -0.02 1.51 16 10 C -0.17 -2.97 9.32 71.98 0.67 -2.30 16 11 N -1.11 -21.98 5.35 -169.38 -0.91 -22.89 16 12 S 2.63 72.23 5.38 -56.49 -0.30 71.92 16 13 O -1.00 -34.44 18.08 -127.65 -2.31 -36.75 16 14 O -0.98 -32.35 17.11 -127.65 -2.18 -34.54 16 15 C -0.61 -17.04 5.96 71.98 0.43 -16.61 16 16 C -0.11 -4.22 5.16 30.60 0.16 -4.06 16 17 C 0.03 1.56 4.97 29.85 0.15 1.71 16 18 C -0.55 -31.07 9.11 25.60 0.23 -30.84 16 19 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 20 C 0.00 0.14 5.46 84.66 0.46 0.60 16 21 N -0.93 -55.05 13.29 21.45 0.28 -54.76 16 22 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 23 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 C -0.21 -3.37 9.04 22.37 0.20 -3.17 16 27 C -0.09 -1.31 9.69 22.25 0.22 -1.09 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.53 8.08 -2.39 -0.02 0.51 16 30 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 31 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 32 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 33 H 0.08 0.98 7.65 -2.39 -0.02 0.97 16 34 H 0.10 0.93 7.67 -2.38 -0.02 0.91 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.24 7.42 -2.39 -0.02 1.22 16 37 H 0.06 1.17 7.56 -2.39 -0.02 1.15 16 38 H 0.42 7.82 8.54 -96.73 -0.83 6.99 16 39 H 0.15 3.41 7.44 -2.39 -0.02 3.40 16 40 H 0.15 3.60 8.14 -2.39 -0.02 3.58 16 41 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 45 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 46 H 0.14 1.73 6.30 -2.91 -0.02 1.72 16 47 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -76.20 400.75 0.08 -76.11 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.13 Total: 17.42 kcal Atomic # 6 Polarization: -60.21 SS G_CDS: 4.17 Total: -56.04 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -0.62 Total: -77.65 kcal Atomic # 8 Polarization: -72.44 SS G_CDS: -5.32 Total: -77.76 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 72.23 SS G_CDS: -0.30 Total: 71.92 kcal Total: -76.20 0.08 -76.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068903880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.407 kcal (2) G-P(sol) polarization free energy of solvation -76.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds