Wall clock time and date at job start Sat Apr 11 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00149 * 2 1 4 4 H 1.48504 * 109.47070 * 270.00286 * 3 2 1 5 5 H 1.48493 * 109.47147 * 30.00124 * 3 2 1 6 6 H 1.48503 * 109.47067 * 150.00388 * 3 2 1 7 7 C 1.38812 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99809 * 359.97438 * 7 2 1 9 9 N 1.36937 * 120.00357 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00268 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47301 * 180.02562 * 10 9 7 12 12 C 1.38238 * 120.00371 * 89.99743 * 11 10 9 13 13 C 1.38226 * 120.00065 * 180.02562 * 12 11 10 14 14 C 1.38240 * 120.00233 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00271 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.46812 * 90.00180 * 15 14 13 17 17 C 1.34777 * 119.99776 * 180.02562 * 16 15 14 18 18 O 1.21281 * 120.00115 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00139 * 179.97438 * 17 16 15 20 20 O 1.42894 * 109.47522 * 179.97438 * 19 17 16 21 21 C 1.35910 * 117.00621 * 180.02562 * 20 19 17 22 22 C 1.39138 * 120.47706 * 180.24394 * 21 20 19 23 23 C 1.38535 * 118.37336 * 180.24194 * 22 21 20 24 24 C 1.38262 * 119.22035 * 359.47237 * 23 22 21 25 25 N 1.31844 * 120.88422 * 0.30388 * 24 23 22 26 26 C 1.31834 * 121.78446 * 359.97438 * 25 24 23 27 27 C 1.38233 * 119.99675 * 0.25514 * 14 13 12 28 28 C 1.38235 * 119.99570 * 270.01953 * 11 10 9 29 29 H 0.96999 * 119.99611 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99812 * 0.02562 * 9 7 2 31 31 H 1.08992 * 109.47257 * 59.99741 * 10 9 7 32 32 H 1.09000 * 109.46997 * 299.99759 * 10 9 7 33 33 H 1.08005 * 119.99510 * 0.02562 * 12 11 10 34 34 H 1.08001 * 120.00181 * 179.97438 * 13 12 11 35 35 H 1.08999 * 109.46736 * 330.00271 * 15 14 13 36 36 H 1.08993 * 109.47474 * 210.00247 * 15 14 13 37 37 H 0.97007 * 120.00368 * 359.97438 * 16 15 14 38 38 H 1.09002 * 109.46741 * 59.99741 * 19 17 16 39 39 H 1.08998 * 109.47583 * 300.00372 * 19 17 16 40 40 H 1.07999 * 120.81005 * 0.02562 * 22 21 20 41 41 H 1.08002 * 120.39207 * 179.75678 * 23 22 21 42 42 H 1.08000 * 119.55595 * 180.28266 * 24 23 22 43 43 H 1.07997 * 119.66066 * 179.97438 * 26 25 24 44 44 H 1.07997 * 119.99924 * 179.72547 * 27 14 13 45 45 H 1.07997 * 120.00189 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0022 11 6 5.5938 -2.1956 -0.0020 12 6 6.2734 -2.0703 1.1953 13 6 7.6323 -1.8173 1.1954 14 6 8.3118 -1.6900 -0.0017 15 6 9.7933 -1.4135 -0.0015 16 7 10.5266 -2.6817 -0.0020 17 6 11.8744 -2.6808 -0.0015 18 8 12.4801 -1.6300 -0.0010 19 6 12.6289 -3.9853 -0.0014 20 8 14.0336 -3.7233 -0.0014 21 6 14.8623 -4.8005 -0.0019 22 6 16.2431 -4.6286 0.0032 23 6 17.0470 -5.7568 -0.0027 24 6 16.4559 -7.0067 -0.0022 25 7 15.1437 -7.1348 -0.0023 26 6 14.3437 -6.0870 -0.0023 27 6 7.6314 -1.8105 -1.1988 28 6 6.2731 -2.0679 -1.1990 29 1 -0.4849 0.8401 0.0004 30 1 3.8647 -0.3622 -0.0007 31 1 3.8484 -3.0419 -0.8924 32 1 3.8491 -3.0430 0.8875 33 1 5.7425 -2.1702 2.1305 34 1 8.1632 -1.7190 2.1308 35 1 10.0561 -0.8422 0.8888 36 1 10.0562 -0.8414 -0.8911 37 1 10.0422 -3.5222 -0.0020 38 1 12.3663 -4.5569 -0.8916 39 1 12.3656 -4.5574 0.8883 40 1 16.6774 -3.6398 0.0080 41 1 18.1227 -5.6612 -0.0029 42 1 17.0775 -7.8899 -0.0022 43 1 13.2735 -6.2317 -0.0028 44 1 8.1614 -1.7067 -2.1340 45 1 5.7421 -2.1650 -2.1344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715196856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:43 Heat of formation + Delta-G solvation = -16.276707 kcal Electronic energy + Delta-G solvation = -26730.363350 eV Core-core repulsion = 22712.745194 eV Total energy + Delta-G solvation = -4017.618155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.76757 -40.94832 -40.25313 -38.90660 -37.07980 -35.85311 -33.91865 -33.42790 -32.37213 -31.87142 -31.45571 -29.95439 -28.18118 -25.84793 -24.67274 -24.04325 -23.68753 -23.64480 -21.79802 -21.73458 -19.87808 -19.45873 -18.81131 -17.73677 -17.56780 -17.32212 -17.10189 -16.69279 -16.65621 -16.54945 -15.88256 -15.73342 -15.43927 -15.35176 -14.95954 -14.78166 -14.57830 -14.36058 -14.16968 -14.08504 -14.05570 -13.71963 -13.46997 -13.25483 -13.16510 -13.10191 -12.85964 -12.48470 -12.20140 -11.93345 -11.92228 -11.78204 -11.17426 -11.04150 -10.72216 -10.45948 -10.24361 -9.84273 -9.69062 -9.51907 -9.34475 -8.05638 -5.39685 0.11812 0.18275 0.25788 0.48501 1.36458 1.38497 1.43285 1.46067 1.48466 2.45548 2.50854 2.79945 2.85563 3.25972 3.50548 3.53944 3.61279 3.72046 3.85243 3.87808 3.97404 4.01019 4.01460 4.05269 4.11013 4.12911 4.26742 4.44403 4.54487 4.61632 4.67630 4.67806 4.88042 4.88211 4.96462 5.05259 5.13926 5.18343 5.23791 5.42766 5.52255 5.57818 5.72386 5.78300 6.03333 6.08097 6.18068 6.42298 6.94546 7.03984 7.08152 7.79022 7.98785 9.15594 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.032090 B = 0.001502 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.340791 B =18633.496240 C =19190.744255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.058 4.058 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.256 1.256 7 C -0.238 4.238 8 H 0.060 0.940 9 N -0.753 5.753 10 C 0.188 3.812 11 C -0.091 4.091 12 C -0.116 4.116 13 C -0.097 4.097 14 C -0.108 4.108 15 C 0.172 3.828 16 N -0.705 5.705 17 C 0.516 3.484 18 O -0.570 6.570 19 C 0.036 3.964 20 O -0.310 6.310 21 C 0.066 3.934 22 C -0.121 4.121 23 C -0.123 4.123 24 C 0.051 3.949 25 N -0.478 5.478 26 C 0.008 3.992 27 C -0.096 4.096 28 C -0.115 4.115 29 H 0.259 0.741 30 H 0.365 0.635 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.124 0.876 34 H 0.143 0.857 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.419 0.581 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.150 0.850 41 H 0.174 0.826 42 H 0.182 0.818 43 H 0.179 0.821 44 H 0.144 0.856 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.950 -13.065 -0.012 39.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.250 4.250 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.369 4.369 8 H 0.078 0.922 9 N -0.398 5.398 10 C 0.063 3.937 11 C -0.092 4.092 12 C -0.134 4.134 13 C -0.115 4.115 14 C -0.109 4.109 15 C 0.049 3.951 16 N -0.359 5.359 17 C 0.302 3.698 18 O -0.449 6.449 19 C -0.041 4.041 20 O -0.222 6.222 21 C 0.018 3.982 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.107 4.107 25 N -0.188 5.188 26 C -0.150 4.150 27 C -0.115 4.115 28 C -0.134 4.134 29 H 0.068 0.932 30 H 0.198 0.802 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.257 0.743 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.167 0.833 41 H 0.191 0.809 42 H 0.199 0.801 43 H 0.196 0.804 44 H 0.162 0.838 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 36.833 -13.032 -0.009 39.071 hybrid contribution -0.545 1.519 0.009 1.614 sum 36.288 -11.512 0.000 38.070 Atomic orbital electron populations 1.69874 1.07048 1.26753 1.59444 1.25453 0.96050 1.01082 1.02430 0.85443 0.78550 0.79841 0.78161 1.20367 1.22018 1.18056 1.19060 0.82493 0.93662 1.41675 0.92205 1.42700 1.02374 1.03757 1.91010 1.19732 0.87038 0.87752 0.99211 1.20156 0.94946 0.99615 0.94450 1.21220 0.94930 0.99668 0.97607 1.21220 0.93496 0.98285 0.98488 1.19774 0.94731 1.02985 0.93397 1.20084 0.86072 0.85691 1.03281 1.45785 1.04862 1.10621 1.74622 1.20438 0.82768 0.90649 0.75927 1.90761 1.68984 1.34847 1.50309 1.22728 0.78968 0.95385 1.07061 1.86122 1.16806 1.30498 1.88765 1.20273 0.91745 0.87427 0.98749 1.21316 0.90269 1.01762 1.01411 1.22386 1.02784 0.91613 0.97452 1.23213 0.90599 0.98696 0.98164 1.67565 1.06747 1.33881 1.10592 1.23245 1.01695 0.86749 1.03271 1.21228 0.93515 0.98242 0.98476 1.21227 0.94926 0.99614 0.97607 0.93229 0.80170 0.94636 0.94766 0.85781 0.83881 0.90578 0.90543 0.74325 0.85646 0.85641 0.83253 0.80859 0.80081 0.80440 0.83830 0.85659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.70 13.97 21.65 0.30 -62.40 16 2 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 3 Si 0.95 45.66 27.74 68.60 1.90 47.56 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.26 -11.23 6.52 99.48 0.65 -10.58 16 7 C -0.24 -13.59 10.47 84.03 0.88 -12.71 16 8 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 9 N -0.75 -35.16 5.40 -347.20 -1.87 -37.04 16 10 C 0.19 7.01 6.38 85.64 0.55 7.55 16 11 C -0.09 -2.64 5.25 -19.86 -0.10 -2.75 16 12 C -0.12 -2.89 9.70 22.27 0.22 -2.68 16 13 C -0.10 -1.84 9.70 22.27 0.22 -1.63 16 14 C -0.11 -1.87 5.25 -19.86 -0.10 -1.97 16 15 C 0.17 2.60 5.80 85.63 0.50 3.10 16 16 N -0.70 -8.14 5.55 -466.79 -2.59 -10.73 16 17 C 0.52 8.27 7.91 87.66 0.69 8.96 16 18 O -0.57 -15.24 16.50 16.00 0.26 -14.98 16 19 C 0.04 0.35 5.23 71.24 0.37 0.72 16 20 O -0.31 -5.25 9.68 -73.50 -0.71 -5.96 16 21 C 0.07 0.95 6.71 22.60 0.15 1.10 16 22 C -0.12 -1.50 10.13 22.56 0.23 -1.27 16 23 C -0.12 -1.02 10.11 22.35 0.23 -0.80 16 24 C 0.05 0.53 11.18 84.70 0.95 1.48 16 25 N -0.48 -7.20 10.35 -195.44 -2.02 -9.23 16 26 C 0.01 0.10 10.22 84.81 0.87 0.97 16 27 C -0.10 -1.83 9.70 22.27 0.22 -1.61 16 28 C -0.12 -2.86 9.70 22.27 0.22 -2.64 16 29 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 30 H 0.37 16.57 5.52 -92.71 -0.51 16.06 16 31 H 0.04 1.33 8.09 -2.39 -0.02 1.31 16 32 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 33 H 0.12 3.09 8.06 -2.91 -0.02 3.07 16 34 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 35 H 0.08 1.25 8.09 -2.39 -0.02 1.23 16 36 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 37 H 0.42 2.54 8.46 -92.70 -0.78 1.75 16 38 H 0.13 0.48 7.68 -2.39 -0.02 0.46 16 39 H 0.13 0.48 7.68 -2.39 -0.02 0.46 16 40 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 41 H 0.17 0.27 8.06 -2.91 -0.02 0.24 16 42 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 43 H 0.18 1.25 6.32 -2.91 -0.02 1.23 16 44 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 45 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -81.17 389.64 1.48 -79.69 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -0.32 Total: 20.22 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 6.53 Total: -7.15 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -6.19 Total: -119.39 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.45 Total: -20.94 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.90 Total: 47.56 kcal Total: -81.17 1.48 -79.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715196856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.414 kcal (2) G-P(sol) polarization free energy of solvation -81.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds