Wall clock time and date at job start Sat Apr 11 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99980 * 2 1 4 4 H 1.48497 * 109.47590 * 240.00564 * 3 2 1 5 5 H 1.48505 * 109.47178 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47394 * 120.00534 * 3 2 1 7 7 C 1.38811 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00160 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00225 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47371 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47067 * 64.99570 * 11 10 9 13 13 N 1.46496 * 109.47035 * 305.00232 * 11 10 9 14 14 C 1.34783 * 120.00198 * 154.99692 * 13 11 10 15 15 O 1.21603 * 119.99581 * 359.97438 * 14 13 11 16 16 C 1.47460 * 120.00161 * 179.97438 * 14 13 11 17 17 C 1.36230 * 126.36312 * 179.71445 * 16 14 13 18 18 O 1.34284 * 107.12011 * 179.87521 * 17 16 14 19 19 C 1.34473 * 108.16909 * 0.38821 * 18 17 16 20 20 C 1.47877 * 125.49000 * 179.77291 * 19 18 17 21 21 C 1.39540 * 120.14200 * 179.70393 * 20 19 18 22 22 C 1.37969 * 119.85462 * 179.69628 * 21 20 19 23 23 C 1.38352 * 120.14057 * 0.58167 * 22 21 20 24 24 C 1.38347 * 120.28606 * 359.71326 * 23 22 21 25 25 C 1.37959 * 120.14556 * 359.97438 * 24 23 22 26 26 N 1.30895 * 109.02085 * 359.75357 * 19 18 17 27 27 C 1.52996 * 109.47365 * 184.99702 * 11 10 9 28 28 C 1.53002 * 117.49888 * 116.25530 * 27 11 10 29 29 C 1.53000 * 117.50107 * 184.91292 * 27 11 10 30 30 H 0.96996 * 120.00274 * 359.97438 * 1 2 3 31 31 H 0.96997 * 119.99582 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.47199 * 59.99799 * 10 9 7 33 33 H 1.09003 * 109.47159 * 300.00101 * 10 9 7 34 34 H 0.97000 * 120.00252 * 334.99645 * 13 11 10 35 35 H 1.07996 * 126.44452 * 0.02562 * 17 16 14 36 36 H 1.08003 * 120.07395 * 359.97438 * 21 20 19 37 37 H 1.08001 * 119.92960 * 180.31398 * 22 21 20 38 38 H 1.08002 * 119.85057 * 179.73927 * 23 22 21 39 39 H 1.07999 * 119.92727 * 180.02562 * 24 23 22 40 40 H 1.08002 * 120.07394 * 180.02562 * 25 24 23 41 41 H 1.09002 * 115.54951 * 330.58504 * 27 11 10 42 42 H 1.09000 * 117.49996 * 215.00804 * 28 27 11 43 43 H 1.08999 * 117.49664 * 0.02562 * 28 27 11 44 44 H 1.09008 * 117.49673 * 359.97438 * 29 27 11 45 45 H 1.08999 * 117.49959 * 144.99502 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.4973 -4.8139 -0.9310 13 7 0.1449 -4.6758 1.1318 14 6 -1.0797 -5.2367 1.0811 15 8 -1.4217 -5.8618 0.0957 16 6 -2.0046 -5.0923 2.2204 17 6 -3.2668 -5.5978 2.3052 18 8 -3.7561 -5.2402 3.5035 19 6 -2.8168 -4.5204 4.1422 20 6 -2.9567 -3.9309 5.4912 21 6 -1.9041 -3.2065 6.0519 22 6 -2.0433 -2.6538 7.3083 23 6 -3.2189 -2.8267 8.0170 24 6 -4.2640 -3.5490 7.4692 25 6 -4.1399 -4.1014 6.2111 26 7 -1.7586 -4.4260 3.3777 27 6 1.8248 -6.1411 0.1258 28 6 1.5767 -6.9828 1.3791 29 6 1.0141 -7.4351 0.0293 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6848 -3.7145 0.8894 33 1 2.6848 -3.7145 -0.8905 34 1 0.4176 -4.1769 1.9177 35 1 -3.7770 -6.1791 1.5516 36 1 -0.9841 -3.0750 5.5017 37 1 -1.2312 -2.0886 7.7414 38 1 -3.3213 -2.3955 9.0019 39 1 -5.1793 -3.6800 8.0273 40 1 -4.9567 -4.6647 5.7844 41 1 2.8315 -6.1456 -0.2923 42 1 2.4201 -7.5409 1.7857 43 1 0.8710 -6.5953 2.1140 44 1 -0.0615 -7.3450 -0.1232 45 1 1.4874 -8.2908 -0.4522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716627939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:02 Heat of formation + Delta-G solvation = 58.752902 kcal Electronic energy + Delta-G solvation = -28930.913125 eV Core-core repulsion = 24916.548498 eV Total energy + Delta-G solvation = -4014.364627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 3.37 seconds Orbital eigenvalues (eV) -43.43582 -39.86799 -39.23511 -37.10764 -35.00100 -34.82892 -33.20167 -32.54302 -31.23846 -31.07733 -29.30296 -28.15783 -24.58454 -24.05642 -23.75886 -22.68536 -22.19265 -21.48511 -21.29669 -20.42834 -19.63968 -18.44696 -17.28224 -16.99842 -16.86905 -16.34493 -15.98002 -15.81958 -15.60494 -15.07421 -14.71997 -14.27378 -14.09121 -13.74312 -13.67711 -13.52893 -13.46260 -13.17404 -13.15235 -12.85580 -12.08744 -11.75179 -11.63623 -11.46480 -11.39153 -11.31952 -11.15951 -10.87646 -10.81790 -10.78509 -10.25216 -10.13354 -9.94398 -9.84975 -9.74585 -9.56301 -9.23935 -8.88577 -8.68649 -8.45162 -6.93127 -5.74397 -3.04458 0.44316 1.12579 1.29003 2.22843 2.38388 3.25934 3.43414 3.45025 3.49214 3.50430 3.62330 3.72594 4.09162 4.57405 4.58519 4.66719 4.74319 4.81499 4.88695 4.95967 5.12681 5.20639 5.22695 5.23145 5.34081 5.53806 5.55744 5.57513 5.61388 5.75511 5.77253 5.87013 5.89624 6.02648 6.04901 6.15560 6.17870 6.24089 6.26197 6.35368 6.49779 6.52935 6.61833 6.70507 6.91686 7.37286 7.70195 7.86690 8.42016 8.43755 9.54562 10.10441 10.45757 11.47756 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007269 B = 0.003828 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3851.123787 B = 7312.328858 C =10031.655543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.167 3.833 12 H 0.093 0.907 13 N -0.687 5.687 14 C 0.603 3.397 15 O -0.540 6.540 16 C -0.057 4.057 17 C 0.010 3.990 18 O -0.193 6.193 19 C 0.235 3.765 20 C -0.017 4.017 21 C -0.066 4.066 22 C -0.120 4.120 23 C -0.102 4.102 24 C -0.124 4.124 25 C -0.090 4.090 26 N -0.437 5.437 27 C -0.160 4.160 28 C -0.177 4.177 29 C -0.186 4.186 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.027 0.973 33 H 0.036 0.964 34 H 0.414 0.586 35 H 0.233 0.767 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.115 0.885 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.221 -13.294 14.243 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.062 3.938 12 H 0.111 0.889 13 N -0.336 5.336 14 C 0.388 3.612 15 O -0.419 6.419 16 C -0.179 4.179 17 C -0.064 4.064 18 O -0.079 6.079 19 C 0.029 3.971 20 C -0.018 4.018 21 C -0.085 4.085 22 C -0.138 4.138 23 C -0.120 4.120 24 C -0.142 4.142 25 C -0.110 4.110 26 N -0.167 5.167 27 C -0.180 4.180 28 C -0.215 4.215 29 C -0.222 4.222 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.251 0.749 35 H 0.249 0.751 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.129 0.871 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.133 0.867 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.758 -13.274 13.674 20.220 hybrid contribution -0.295 0.872 0.026 0.921 sum -7.053 -12.401 13.700 19.779 Atomic orbital electron populations 1.69663 1.05109 1.25736 1.57299 1.24738 0.95465 0.97651 1.02818 0.86273 0.78503 0.83581 0.77826 1.21275 1.21743 1.21266 1.19156 0.90971 0.84044 1.43238 0.91182 1.42332 1.05991 0.99691 1.89573 1.20918 0.92989 0.85053 0.99028 1.20842 0.90202 0.93087 0.89639 0.88897 1.45801 1.13643 1.53071 1.21091 1.16679 0.81151 0.79134 0.84240 1.90730 1.76385 1.42718 1.32074 1.21867 0.96194 1.04176 0.95673 1.25330 0.94524 1.00573 0.85928 1.84401 1.42642 1.54691 1.26122 1.23754 0.82751 0.95469 0.95128 1.17281 0.96348 1.00980 0.87228 1.21302 0.98262 0.93952 0.95004 1.21168 0.98301 0.99950 0.94390 1.21380 0.93280 0.97445 0.99933 1.21051 0.99379 0.98518 0.95249 1.21223 0.96259 0.98863 0.94615 1.71004 1.25302 1.18344 1.02019 1.22707 1.00432 0.91851 1.03003 1.22898 1.03256 1.03776 0.91539 1.23314 1.01942 0.97125 0.99864 0.93488 0.77997 0.95550 0.94661 0.74934 0.75101 0.83970 0.84913 0.85508 0.85293 0.85162 0.87109 0.89464 0.89071 0.86658 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.52 5.43 -59.91 -0.33 -18.84 16 10 C 0.15 2.96 5.78 -4.04 -0.02 2.93 16 11 C 0.17 2.91 2.57 -67.94 -0.17 2.74 16 12 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 13 N -0.69 -11.98 3.17 -54.87 -0.17 -12.15 16 14 C 0.60 10.50 6.50 -12.50 -0.08 10.42 16 15 O -0.54 -10.04 13.87 5.27 0.07 -9.97 16 16 C -0.06 -0.91 6.99 -83.09 -0.58 -1.49 16 17 C 0.01 0.13 11.94 30.01 0.36 0.49 16 18 O -0.19 -2.48 10.45 5.30 0.06 -2.43 16 19 C 0.23 3.32 7.88 -14.01 -0.11 3.20 16 20 C -0.02 -0.21 5.87 -104.98 -0.62 -0.82 16 21 C -0.07 -0.76 9.68 -39.19 -0.38 -1.14 16 22 C -0.12 -1.10 10.03 -39.64 -0.40 -1.50 16 23 C -0.10 -0.80 10.04 -39.50 -0.40 -1.20 16 24 C -0.12 -0.98 10.03 -39.64 -0.40 -1.38 16 25 C -0.09 -0.87 9.71 -39.20 -0.38 -1.25 16 26 N -0.44 -7.02 10.65 -8.26 -0.09 -7.11 16 27 C -0.16 -2.34 5.73 -90.62 -0.52 -2.86 16 28 C -0.18 -2.42 9.69 -26.69 -0.26 -2.68 16 29 C -0.19 -2.61 9.85 -26.70 -0.26 -2.87 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.39 10.52 7.33 -40.82 -0.30 10.22 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.41 7.47 8.33 -40.82 -0.34 7.13 16 35 H 0.23 2.18 8.06 -52.49 -0.42 1.76 16 36 H 0.14 1.76 7.82 -52.48 -0.41 1.34 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.13 1.07 7.89 -52.49 -0.41 0.66 16 41 H 0.11 1.47 8.08 -51.93 -0.42 1.05 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.09 1.34 6.41 -51.93 -0.33 1.01 16 44 H 0.12 1.85 5.25 -51.92 -0.27 1.58 16 45 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 384.90 15.07 5.80 5.80 Total: -1.00 -32.93 384.90 -9.24 -42.17 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -5.81 Total: 17.55 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -4.47 Total: -4.76 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: 0.14 Total: -65.84 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.13 Total: -12.39 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.93 -9.24 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716627939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.919 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.37 seconds