Wall clock time and date at job start Sat Apr 11 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99980 * 2 1 4 4 H 1.48497 * 109.47590 * 240.00564 * 3 2 1 5 5 H 1.48505 * 109.47178 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47394 * 120.00534 * 3 2 1 7 7 C 1.38811 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00160 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00225 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47371 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47067 * 64.99570 * 11 10 9 13 13 N 1.46496 * 109.47035 * 305.00232 * 11 10 9 14 14 C 1.34783 * 120.00198 * 154.99692 * 13 11 10 15 15 O 1.21603 * 119.99581 * 359.97438 * 14 13 11 16 16 C 1.47460 * 120.00161 * 179.97438 * 14 13 11 17 17 C 1.36230 * 126.36312 * 179.71445 * 16 14 13 18 18 O 1.34284 * 107.12011 * 179.87521 * 17 16 14 19 19 C 1.34473 * 108.16909 * 0.38821 * 18 17 16 20 20 C 1.47877 * 125.49000 * 179.77291 * 19 18 17 21 21 C 1.39540 * 120.14200 * 179.70393 * 20 19 18 22 22 C 1.37969 * 119.85462 * 179.69628 * 21 20 19 23 23 C 1.38352 * 120.14057 * 0.58167 * 22 21 20 24 24 C 1.38347 * 120.28606 * 359.71326 * 23 22 21 25 25 C 1.37959 * 120.14556 * 359.97438 * 24 23 22 26 26 N 1.30895 * 109.02085 * 359.75357 * 19 18 17 27 27 C 1.52996 * 109.47365 * 184.99702 * 11 10 9 28 28 C 1.53002 * 117.49888 * 116.25530 * 27 11 10 29 29 C 1.53000 * 117.50107 * 184.91292 * 27 11 10 30 30 H 0.96996 * 120.00274 * 359.97438 * 1 2 3 31 31 H 0.96997 * 119.99582 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.47199 * 59.99799 * 10 9 7 33 33 H 1.09003 * 109.47159 * 300.00101 * 10 9 7 34 34 H 0.97000 * 120.00252 * 334.99645 * 13 11 10 35 35 H 1.07996 * 126.44452 * 0.02562 * 17 16 14 36 36 H 1.08003 * 120.07395 * 359.97438 * 21 20 19 37 37 H 1.08001 * 119.92960 * 180.31398 * 22 21 20 38 38 H 1.08002 * 119.85057 * 179.73927 * 23 22 21 39 39 H 1.07999 * 119.92727 * 180.02562 * 24 23 22 40 40 H 1.08002 * 120.07394 * 180.02562 * 25 24 23 41 41 H 1.09002 * 115.54951 * 330.58504 * 27 11 10 42 42 H 1.09000 * 117.49996 * 215.00804 * 28 27 11 43 43 H 1.08999 * 117.49664 * 0.02562 * 28 27 11 44 44 H 1.09008 * 117.49673 * 359.97438 * 29 27 11 45 45 H 1.08999 * 117.49959 * 144.99502 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.4973 -4.8139 -0.9310 13 7 0.1449 -4.6758 1.1318 14 6 -1.0797 -5.2367 1.0811 15 8 -1.4217 -5.8618 0.0957 16 6 -2.0046 -5.0923 2.2204 17 6 -3.2668 -5.5978 2.3052 18 8 -3.7561 -5.2402 3.5035 19 6 -2.8168 -4.5204 4.1422 20 6 -2.9567 -3.9309 5.4912 21 6 -1.9041 -3.2065 6.0519 22 6 -2.0433 -2.6538 7.3083 23 6 -3.2189 -2.8267 8.0170 24 6 -4.2640 -3.5490 7.4692 25 6 -4.1399 -4.1014 6.2111 26 7 -1.7586 -4.4260 3.3777 27 6 1.8248 -6.1411 0.1258 28 6 1.5767 -6.9828 1.3791 29 6 1.0141 -7.4351 0.0293 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6848 -3.7145 0.8894 33 1 2.6848 -3.7145 -0.8905 34 1 0.4176 -4.1769 1.9177 35 1 -3.7770 -6.1791 1.5516 36 1 -0.9841 -3.0750 5.5017 37 1 -1.2312 -2.0886 7.7414 38 1 -3.3213 -2.3955 9.0019 39 1 -5.1793 -3.6800 8.0273 40 1 -4.9567 -4.6647 5.7844 41 1 2.8315 -6.1456 -0.2923 42 1 2.4201 -7.5409 1.7857 43 1 0.8710 -6.5953 2.1140 44 1 -0.0615 -7.3450 -0.1232 45 1 1.4874 -8.2908 -0.4522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716627939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:00 Heat of formation + Delta-G solvation = 36.784925 kcal Electronic energy + Delta-G solvation = -28931.865728 eV Core-core repulsion = 24916.548498 eV Total energy + Delta-G solvation = -4015.317230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -44.51871 -41.21718 -39.97071 -38.43676 -36.58482 -36.08570 -34.79191 -33.45905 -32.97751 -31.93944 -30.39716 -29.75674 -26.19882 -25.38962 -24.83934 -23.57024 -23.41355 -22.98254 -22.29635 -21.57627 -20.97071 -19.65739 -19.11062 -18.05474 -18.00344 -17.34570 -17.25238 -17.16155 -16.65335 -16.46324 -15.91225 -15.64262 -15.24541 -15.13746 -15.01425 -14.73382 -14.64119 -14.45951 -14.39010 -13.92361 -13.69686 -13.15542 -12.85451 -12.73675 -12.69210 -12.59224 -12.43011 -12.33163 -12.15118 -12.13035 -11.89244 -11.85458 -11.46118 -11.12027 -10.98237 -10.88288 -10.83490 -10.06036 -9.96232 -9.39829 -9.03227 -7.94718 -5.25152 -0.43901 0.19411 0.40822 1.19978 1.36334 1.46524 1.50020 1.55976 1.97753 2.19114 2.54945 2.66291 2.83477 2.93310 3.39287 3.52124 3.65182 3.65855 3.94494 3.98264 4.01123 4.05491 4.15456 4.18662 4.34738 4.37141 4.43575 4.46256 4.47327 4.57371 4.60955 4.74691 4.80305 4.84618 4.92805 5.03148 5.07515 5.09649 5.23176 5.36061 5.38150 5.46326 5.46808 5.50145 5.52383 5.93525 6.22531 6.24651 6.50944 7.04587 7.31899 8.04819 8.28891 9.28248 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007269 B = 0.003828 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3851.123787 B = 7312.328858 C =10031.655543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.073 4.073 3 Si 0.975 3.025 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.176 3.824 12 H 0.070 0.930 13 N -0.688 5.688 14 C 0.602 3.398 15 O -0.558 6.558 16 C -0.095 4.095 17 C 0.033 3.967 18 O -0.185 6.185 19 C 0.235 3.765 20 C -0.046 4.046 21 C -0.088 4.088 22 C -0.126 4.126 23 C -0.093 4.093 24 C -0.119 4.119 25 C -0.092 4.092 26 N -0.469 5.469 27 C -0.165 4.165 28 C -0.168 4.168 29 C -0.181 4.181 30 H 0.249 0.751 31 H 0.372 0.628 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.409 0.591 35 H 0.266 0.734 36 H 0.120 0.880 37 H 0.149 0.851 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.143 0.857 41 H 0.131 0.869 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.218 -13.893 16.081 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.071 3.929 12 H 0.088 0.912 13 N -0.337 5.337 14 C 0.388 3.612 15 O -0.438 6.438 16 C -0.216 4.216 17 C -0.041 4.041 18 O -0.071 6.071 19 C 0.029 3.971 20 C -0.047 4.047 21 C -0.107 4.107 22 C -0.144 4.144 23 C -0.111 4.111 24 C -0.137 4.137 25 C -0.111 4.111 26 N -0.199 5.199 27 C -0.184 4.184 28 C -0.205 4.205 29 C -0.217 4.217 30 H 0.058 0.942 31 H 0.204 0.796 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.245 0.755 35 H 0.282 0.718 36 H 0.138 0.862 37 H 0.167 0.833 38 H 0.178 0.822 39 H 0.180 0.820 40 H 0.161 0.839 41 H 0.148 0.852 42 H 0.129 0.871 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.705 -13.908 15.509 21.885 hybrid contribution -0.334 1.018 -0.453 1.163 sum -7.039 -12.891 15.056 21.034 Atomic orbital electron populations 1.69846 1.06804 1.26014 1.59336 1.25584 0.96273 1.01193 1.03508 0.85189 0.77127 0.78993 0.78289 1.20315 1.22442 1.20140 1.19614 0.91613 0.85085 1.41489 0.90183 1.42513 1.05559 1.01017 1.89557 1.21052 0.93334 0.83792 0.99490 1.20645 0.89616 0.93839 0.88766 0.91237 1.45782 1.13974 1.53171 1.20730 1.16872 0.81143 0.78632 0.84528 1.90706 1.76681 1.43544 1.32844 1.21818 0.97379 1.06571 0.95800 1.25925 0.93422 0.98804 0.85952 1.84428 1.42217 1.54452 1.26006 1.24245 0.82332 0.94850 0.95640 1.17489 0.97851 1.02556 0.86845 1.21290 0.97732 0.95409 0.96266 1.21424 0.99708 0.99716 0.93502 1.21810 0.92200 0.96170 1.00901 1.21480 1.00581 0.97132 0.94462 1.21463 0.95517 0.98885 0.95243 1.70950 1.26689 1.19596 1.02632 1.22642 1.00979 0.90421 1.04404 1.22920 1.03511 1.03137 0.90934 1.23280 1.00815 0.97361 1.00291 0.94201 0.79594 0.94599 0.93752 0.75499 0.71839 0.86166 0.83314 0.82175 0.81959 0.83908 0.85154 0.87085 0.90582 0.88804 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.08 13.06 21.65 0.28 -60.80 16 2 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 3 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.25 -13.90 9.99 84.03 0.84 -13.06 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.74 -38.61 5.43 -343.46 -1.87 -40.47 16 10 C 0.15 6.04 5.78 86.38 0.50 6.54 16 11 C 0.18 6.29 2.57 44.99 0.12 6.41 16 12 H 0.07 2.81 7.58 -2.39 -0.02 2.79 16 13 N -0.69 -25.19 3.17 -445.77 -1.41 -26.60 16 14 C 0.60 21.99 6.50 86.67 0.56 22.56 16 15 O -0.56 -21.49 13.87 -4.04 -0.06 -21.55 16 16 C -0.10 -3.17 6.99 40.50 0.28 -2.89 16 17 C 0.03 0.85 11.94 67.35 0.80 1.66 16 18 O -0.19 -4.78 10.45 -3.96 -0.04 -4.82 16 19 C 0.24 6.91 7.88 87.39 0.69 7.59 16 20 C -0.05 -1.14 5.87 -20.09 -0.12 -1.26 16 21 C -0.09 -2.11 9.68 22.52 0.22 -1.90 16 22 C -0.13 -2.20 10.03 22.23 0.22 -1.97 16 23 C -0.09 -1.19 10.04 22.32 0.22 -0.96 16 24 C -0.12 -1.54 10.03 22.23 0.22 -1.31 16 25 C -0.09 -1.65 9.71 22.52 0.22 -1.43 16 26 N -0.47 -16.02 10.65 -294.26 -3.13 -19.16 16 27 C -0.17 -4.69 5.73 -10.79 -0.06 -4.76 16 28 C -0.17 -4.42 9.69 30.62 0.30 -4.12 16 29 C -0.18 -4.90 9.85 30.62 0.30 -4.60 16 30 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.37 21.18 7.33 -92.71 -0.68 20.50 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.41 15.72 8.33 -92.71 -0.77 14.95 16 35 H 0.27 4.70 8.06 -2.91 -0.02 4.68 16 36 H 0.12 3.31 7.82 -2.91 -0.02 3.29 16 37 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 39 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 40 H 0.14 2.12 7.89 -2.91 -0.02 2.09 16 41 H 0.13 3.21 8.08 -2.39 -0.02 3.19 16 42 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.08 2.26 6.41 -2.39 -0.02 2.25 16 44 H 0.09 3.03 5.25 -2.38 -0.01 3.02 16 45 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -73.47 384.90 1.18 -72.29 By element: Atomic # 1 Polarization: 50.07 SS G_CDS: -0.41 Total: 49.66 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 5.78 Total: 2.68 kcal Atomic # 7 Polarization: -140.90 SS G_CDS: -6.13 Total: -147.03 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.10 Total: -26.37 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -73.47 1.18 -72.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716627939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.076 kcal (2) G-P(sol) polarization free energy of solvation -73.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds