Wall clock time and date at job start Sat Apr 11 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00093 * 2 1 4 4 H 1.48500 * 109.47319 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47108 * 120.00184 * 3 2 1 6 6 H 1.48502 * 109.46962 * 240.00019 * 3 2 1 7 7 C 1.38814 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99776 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00318 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00231 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47513 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.88022 * 57.42988 * 11 10 9 13 13 C 1.55156 * 111.00461 * 181.35410 * 11 10 9 14 14 C 1.54322 * 102.94063 * 153.58102 * 13 11 10 15 15 N 1.47029 * 107.27178 * 337.80505 * 14 13 11 16 16 C 1.34770 * 125.64895 * 178.97897 * 15 14 13 17 17 O 1.21550 * 120.00016 * 174.74842 * 16 15 14 18 18 C 1.47864 * 119.99999 * 354.74667 * 16 15 14 19 19 C 1.39680 * 120.07688 * 7.71368 * 18 16 15 20 20 C 1.38056 * 120.15210 * 179.71729 * 19 18 16 21 21 C 1.38109 * 120.29506 * 0.55515 * 20 19 18 22 22 C 1.39638 * 120.14489 * 359.72005 * 21 20 19 23 23 C 1.47849 * 120.07415 * 179.97438 * 22 21 20 24 24 C 1.35763 * 126.58221 * 359.73030 * 23 22 21 25 25 N 1.34138 * 107.52014 * 179.90220 * 24 23 22 26 26 C 1.30357 * 108.89776 * 0.37057 * 25 24 23 27 27 O 1.33996 * 109.03673 * 359.77349 * 26 25 24 28 28 C 1.39312 * 120.07752 * 187.98308 * 18 16 15 29 29 C 1.47426 * 108.69966 * 358.94037 * 15 14 13 30 30 H 0.97000 * 119.99849 * 359.97438 * 1 2 3 31 31 H 0.96997 * 119.99903 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47692 * 300.00944 * 10 9 7 33 33 H 1.09006 * 109.46952 * 60.00326 * 10 9 7 34 34 H 1.09003 * 110.71814 * 271.94256 * 13 11 10 35 35 H 1.08990 * 110.72074 * 35.21529 * 13 11 10 36 36 H 1.08996 * 109.87909 * 218.38933 * 14 13 11 37 37 H 1.09000 * 110.01151 * 97.29306 * 14 13 11 38 38 H 1.08002 * 119.92669 * 359.97438 * 19 18 16 39 39 H 1.07995 * 119.85700 * 180.27471 * 20 19 18 40 40 H 1.08000 * 119.92165 * 179.74150 * 21 20 19 41 41 H 1.08005 * 126.23637 * 0.02562 * 24 23 22 42 42 H 1.08007 * 125.47915 * 179.76942 * 26 25 24 43 43 H 1.08006 * 120.14562 * 0.02562 * 28 18 16 44 44 H 1.08997 * 110.36751 * 265.28889 * 29 15 14 45 45 H 1.09002 * 110.45355 * 143.01413 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1039 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0016 11 6 1.0637 -4.8198 0.0035 12 1 0.3935 -4.7594 -0.8540 13 6 1.8030 -6.1835 0.0378 14 6 0.7724 -7.1186 0.7049 15 7 -0.1547 -6.2717 1.4697 16 6 -1.2126 -6.7087 2.1812 17 8 -1.8568 -5.9279 2.8540 18 6 -1.5895 -8.1380 2.1432 19 6 -0.7615 -9.0636 1.5040 20 6 -1.1090 -10.3993 1.4727 21 6 -2.2820 -10.8280 2.0624 22 6 -3.1219 -9.9125 2.6998 23 6 -4.3775 -10.3730 3.3300 24 6 -4.8456 -11.6469 3.3646 25 7 -6.0093 -11.6316 4.0316 26 6 -6.2713 -10.4075 4.3954 27 8 -5.2824 -9.6060 3.9769 28 6 -2.7742 -8.5637 2.7400 29 6 0.2652 -4.8654 1.3302 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 0.0016 32 1 2.6841 -3.7150 -0.8887 33 1 2.6853 -3.7142 0.8912 34 1 2.0342 -6.5222 -0.9721 35 1 2.7090 -6.1159 0.6400 36 1 1.2804 -7.8117 1.3754 37 1 0.2248 -7.6738 -0.0567 38 1 0.1549 -8.7343 1.0368 39 1 -0.4631 -11.1116 0.9810 40 1 -2.5501 -11.8738 2.0307 41 1 -4.3672 -12.5148 2.9351 42 1 -7.1450 -10.0904 4.9456 43 1 -3.4204 -7.8514 3.2315 44 1 0.9014 -4.5748 2.1661 45 1 -0.6053 -4.2120 1.2717 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731673880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:23 Heat of formation + Delta-G solvation = 56.546361 kcal Electronic energy + Delta-G solvation = -28067.732487 eV Core-core repulsion = 24053.272176 eV Total energy + Delta-G solvation = -4014.460310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.66824 -40.71457 -38.90308 -37.57411 -35.17033 -34.84655 -33.32061 -32.16434 -31.48253 -30.47307 -29.53220 -28.42826 -25.90679 -24.73730 -23.83728 -23.41973 -22.29654 -22.17734 -21.51140 -20.19807 -19.90170 -18.40572 -17.37562 -17.00133 -16.95739 -16.65708 -16.30557 -15.97566 -15.20573 -15.04757 -14.66671 -14.52618 -14.39015 -14.19767 -13.83030 -13.67831 -13.41146 -13.24367 -13.17314 -12.84197 -12.60193 -12.52886 -11.99731 -11.80519 -11.80115 -11.52437 -11.13339 -10.99365 -10.86264 -10.65303 -10.59227 -10.49412 -10.32931 -10.05650 -9.95205 -9.68489 -9.42645 -8.88663 -8.64960 -8.54235 -6.94327 -5.76277 -3.06067 0.14450 0.63454 1.48135 2.25815 2.28872 2.74576 2.87162 3.44342 3.48518 3.50028 3.53912 3.80850 4.10077 4.23291 4.42775 4.46459 4.52666 4.58633 4.62484 4.69981 4.83849 4.87219 4.94255 5.11260 5.18966 5.26357 5.30389 5.43111 5.52880 5.53594 5.57899 5.80576 5.84732 5.87004 5.88852 5.92040 5.92543 5.95587 6.06421 6.19539 6.32443 6.35138 6.42152 6.64830 6.78240 7.25606 7.45849 7.68645 8.09541 8.41780 9.52937 10.09456 10.43579 11.46247 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.001988 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.002030 B =14082.042612 C =15307.063950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.086 0.914 13 C -0.128 4.128 14 C 0.089 3.911 15 N -0.611 5.611 16 C 0.567 3.433 17 O -0.530 6.530 18 C -0.120 4.120 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.075 4.075 22 C -0.029 4.029 23 C 0.003 3.997 24 C -0.025 4.025 25 N -0.488 5.488 26 C 0.175 3.825 27 O -0.195 6.195 28 C -0.041 4.041 29 C 0.116 3.884 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.025 0.975 33 H 0.022 0.978 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.167 0.833 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.187 0.813 42 H 0.253 0.747 43 H 0.142 0.858 44 H 0.074 0.926 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.394 -28.205 3.487 28.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.104 0.896 13 C -0.167 4.167 14 C -0.034 4.034 15 N -0.344 5.344 16 C 0.356 3.644 17 O -0.407 6.407 18 C -0.123 4.123 19 C -0.132 4.132 20 C -0.140 4.140 21 C -0.093 4.093 22 C -0.030 4.030 23 C -0.050 4.050 24 C -0.165 4.165 25 N -0.215 5.215 26 C -0.050 4.050 27 O -0.081 6.081 28 C -0.060 4.060 29 C -0.005 4.005 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.184 0.816 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.204 0.796 42 H 0.268 0.732 43 H 0.160 0.840 44 H 0.093 0.907 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.083 -28.119 4.049 28.860 hybrid contribution 0.382 1.433 -0.065 1.485 sum -4.701 -26.686 3.984 27.388 Atomic orbital electron populations 1.69650 1.05117 1.25864 1.57342 1.24763 0.95528 0.97760 1.02859 0.86256 0.78504 0.83519 0.77813 1.21692 1.21249 1.21276 1.19155 0.90978 0.84115 1.43185 0.91194 1.42353 1.05903 0.99914 1.89577 1.20589 0.92690 0.84783 0.98245 1.22598 0.97877 0.94797 0.97226 0.89610 1.22736 0.97792 0.94708 1.01421 1.22563 0.91475 0.94223 0.95095 1.48426 1.27378 1.09539 1.49062 1.17857 0.79603 0.87387 0.79505 1.90823 1.52503 1.56656 1.40763 1.19868 0.96682 0.93603 1.02177 1.22992 1.00882 0.93180 0.96143 1.21070 0.96722 0.95895 1.00278 1.21232 0.93508 0.99139 0.95444 1.17492 0.90970 0.93632 1.00873 1.21403 0.92476 0.90057 1.01079 1.23289 0.93574 0.96778 1.02822 1.70364 1.15438 1.21784 1.13957 1.28200 0.93487 0.83593 0.99696 1.84527 1.28160 1.39974 1.55444 1.21390 0.95106 0.94541 0.94918 1.22379 0.99827 0.80524 0.97776 0.93387 0.78195 0.95742 0.96006 0.89687 0.90022 0.90527 0.90396 0.81603 0.84455 0.84917 0.79630 0.73168 0.84040 0.90743 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -18.17 5.45 -59.90 -0.33 -18.49 16 10 C 0.16 3.09 5.71 -4.04 -0.02 3.06 16 11 C -0.11 -1.55 3.10 -88.47 -0.27 -1.83 16 12 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 13 C -0.13 -1.28 6.42 -24.90 -0.16 -1.44 16 14 C 0.09 0.82 4.88 -3.06 -0.01 0.81 16 15 N -0.61 -8.41 3.33 -175.85 -0.58 -8.99 16 16 C 0.57 8.73 7.81 -12.32 -0.10 8.63 16 17 O -0.53 -10.37 16.67 5.32 0.09 -10.28 16 18 C -0.12 -1.44 5.87 -105.02 -0.62 -2.05 16 19 C -0.11 -0.96 8.59 -39.11 -0.34 -1.30 16 20 C -0.12 -0.79 10.02 -39.70 -0.40 -1.18 16 21 C -0.07 -0.53 9.57 -39.11 -0.37 -0.90 16 22 C -0.03 -0.28 5.87 -105.03 -0.62 -0.90 16 23 C 0.00 0.03 7.07 -36.54 -0.26 -0.23 16 24 C -0.03 -0.22 11.29 -17.43 -0.20 -0.42 16 25 N -0.49 -4.73 11.27 -14.68 -0.17 -4.90 16 26 C 0.18 1.37 13.22 52.14 0.69 2.05 16 27 O -0.20 -1.99 10.58 4.25 0.04 -1.94 16 28 C -0.04 -0.48 9.27 -38.77 -0.36 -0.84 16 29 C 0.12 1.89 6.06 -2.53 -0.02 1.88 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.38 10.13 7.53 -40.82 -0.31 9.82 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.77 8.04 -51.93 -0.42 0.36 16 36 H 0.08 0.54 6.81 -51.93 -0.35 0.19 16 37 H 0.08 0.58 6.64 -51.93 -0.34 0.24 16 38 H 0.17 1.09 2.75 -57.96 -0.16 0.93 16 39 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.13 0.55 7.02 -52.49 -0.37 0.18 16 41 H 0.19 1.05 7.29 -52.48 -0.38 0.67 16 42 H 0.25 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.14 1.87 7.55 -52.48 -0.40 1.47 16 44 H 0.07 1.28 8.00 -51.93 -0.42 0.86 16 45 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 LS Contribution 375.98 15.07 5.67 5.67 Total: -1.00 -36.47 375.98 -8.52 -44.99 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.65 Total: 6.22 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -3.30 Total: -2.02 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: -0.35 Total: -60.05 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.13 Total: -12.22 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.47 -8.52 -44.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731673880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.540 kcal (2) G-P(sol) polarization free energy of solvation -36.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds