Wall clock time and date at job start Sat Apr 11 2020 06:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00093 * 2 1 4 4 H 1.48500 * 109.47319 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47108 * 120.00184 * 3 2 1 6 6 H 1.48502 * 109.46962 * 240.00019 * 3 2 1 7 7 C 1.38814 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99776 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00318 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00231 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47513 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.88022 * 57.42988 * 11 10 9 13 13 C 1.55156 * 111.00461 * 181.35410 * 11 10 9 14 14 C 1.54322 * 102.94063 * 153.58102 * 13 11 10 15 15 N 1.47029 * 107.27178 * 337.80505 * 14 13 11 16 16 C 1.34770 * 125.64895 * 178.97897 * 15 14 13 17 17 O 1.21550 * 120.00016 * 174.74842 * 16 15 14 18 18 C 1.47864 * 119.99999 * 354.74667 * 16 15 14 19 19 C 1.39680 * 120.07688 * 7.71368 * 18 16 15 20 20 C 1.38056 * 120.15210 * 179.71729 * 19 18 16 21 21 C 1.38109 * 120.29506 * 0.55515 * 20 19 18 22 22 C 1.39638 * 120.14489 * 359.72005 * 21 20 19 23 23 C 1.47849 * 120.07415 * 179.97438 * 22 21 20 24 24 C 1.35763 * 126.58221 * 359.73030 * 23 22 21 25 25 N 1.34138 * 107.52014 * 179.90220 * 24 23 22 26 26 C 1.30357 * 108.89776 * 0.37057 * 25 24 23 27 27 O 1.33996 * 109.03673 * 359.77349 * 26 25 24 28 28 C 1.39312 * 120.07752 * 187.98308 * 18 16 15 29 29 C 1.47426 * 108.69966 * 358.94037 * 15 14 13 30 30 H 0.97000 * 119.99849 * 359.97438 * 1 2 3 31 31 H 0.96997 * 119.99903 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47692 * 300.00944 * 10 9 7 33 33 H 1.09006 * 109.46952 * 60.00326 * 10 9 7 34 34 H 1.09003 * 110.71814 * 271.94256 * 13 11 10 35 35 H 1.08990 * 110.72074 * 35.21529 * 13 11 10 36 36 H 1.08996 * 109.87909 * 218.38933 * 14 13 11 37 37 H 1.09000 * 110.01151 * 97.29306 * 14 13 11 38 38 H 1.08002 * 119.92669 * 359.97438 * 19 18 16 39 39 H 1.07995 * 119.85700 * 180.27471 * 20 19 18 40 40 H 1.08000 * 119.92165 * 179.74150 * 21 20 19 41 41 H 1.08005 * 126.23637 * 0.02562 * 24 23 22 42 42 H 1.08007 * 125.47915 * 179.76942 * 26 25 24 43 43 H 1.08006 * 120.14562 * 0.02562 * 28 18 16 44 44 H 1.08997 * 110.36751 * 265.28889 * 29 15 14 45 45 H 1.09002 * 110.45355 * 143.01413 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1039 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0016 11 6 1.0637 -4.8198 0.0035 12 1 0.3935 -4.7594 -0.8540 13 6 1.8030 -6.1835 0.0378 14 6 0.7724 -7.1186 0.7049 15 7 -0.1547 -6.2717 1.4697 16 6 -1.2126 -6.7087 2.1812 17 8 -1.8568 -5.9279 2.8540 18 6 -1.5895 -8.1380 2.1432 19 6 -0.7615 -9.0636 1.5040 20 6 -1.1090 -10.3993 1.4727 21 6 -2.2820 -10.8280 2.0624 22 6 -3.1219 -9.9125 2.6998 23 6 -4.3775 -10.3730 3.3300 24 6 -4.8456 -11.6469 3.3646 25 7 -6.0093 -11.6316 4.0316 26 6 -6.2713 -10.4075 4.3954 27 8 -5.2824 -9.6060 3.9769 28 6 -2.7742 -8.5637 2.7400 29 6 0.2652 -4.8654 1.3302 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 0.0016 32 1 2.6841 -3.7150 -0.8887 33 1 2.6853 -3.7142 0.8912 34 1 2.0342 -6.5222 -0.9721 35 1 2.7090 -6.1159 0.6400 36 1 1.2804 -7.8117 1.3754 37 1 0.2248 -7.6738 -0.0567 38 1 0.1549 -8.7343 1.0368 39 1 -0.4631 -11.1116 0.9810 40 1 -2.5501 -11.8738 2.0307 41 1 -4.3672 -12.5148 2.9351 42 1 -7.1450 -10.0904 4.9456 43 1 -3.4204 -7.8514 3.2315 44 1 0.9014 -4.5748 2.1661 45 1 -0.6053 -4.2120 1.2717 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731673880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:22 Heat of formation + Delta-G solvation = 29.163791 kcal Electronic energy + Delta-G solvation = -28068.919884 eV Core-core repulsion = 24053.272176 eV Total energy + Delta-G solvation = -4015.647708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.32751 -41.70906 -39.74835 -38.77408 -36.53966 -35.85059 -34.43265 -33.46326 -32.36842 -31.84289 -30.50630 -29.41409 -27.33527 -25.92638 -24.76875 -24.39715 -23.58501 -22.95439 -22.24620 -21.40180 -20.93061 -19.32530 -18.95349 -18.11331 -17.65730 -17.59337 -17.23877 -16.95025 -16.57578 -16.05602 -15.94507 -15.55142 -15.29242 -15.16210 -14.99207 -14.81815 -14.71674 -14.26028 -14.19148 -13.97695 -13.71249 -13.57362 -13.21752 -13.07851 -12.71762 -12.61867 -12.49505 -12.45943 -12.17422 -12.06531 -11.77065 -11.71953 -11.62214 -11.41707 -11.11097 -11.00849 -10.93069 -10.17751 -9.74454 -9.19291 -9.00786 -7.95457 -5.24847 -0.50098 -0.14583 0.84392 1.45967 1.49738 1.55788 1.60273 1.68138 1.77790 1.84294 2.55509 2.77061 3.23514 3.31976 3.38263 3.51395 3.59520 3.60619 3.83506 3.88806 3.97030 4.05951 4.14371 4.19227 4.24443 4.28733 4.41547 4.46851 4.55174 4.64422 4.72071 4.77741 4.81336 4.84700 4.88570 5.01033 5.05951 5.14063 5.23327 5.27347 5.28302 5.29495 5.32018 5.42499 5.49530 5.75942 6.26046 6.38500 6.61696 6.95169 7.31936 8.09131 8.29790 9.28101 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.001988 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.002030 B =14082.042612 C =15307.063950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.976 3.024 4 H -0.299 1.299 5 H -0.278 1.278 6 H -0.273 1.273 7 C -0.244 4.244 8 H 0.081 0.919 9 N -0.750 5.750 10 C 0.162 3.838 11 C -0.097 4.097 12 H 0.078 0.922 13 C -0.113 4.113 14 C 0.081 3.919 15 N -0.609 5.609 16 C 0.557 3.443 17 O -0.595 6.595 18 C -0.141 4.141 19 C -0.106 4.106 20 C -0.105 4.105 21 C -0.063 4.063 22 C -0.036 4.036 23 C -0.026 4.026 24 C -0.016 4.016 25 N -0.516 5.516 26 C 0.183 3.817 27 O -0.220 6.220 28 C -0.068 4.068 29 C 0.119 3.881 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.039 0.961 33 H 0.026 0.974 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.190 0.810 39 H 0.186 0.814 40 H 0.171 0.829 41 H 0.218 0.782 42 H 0.291 0.709 43 H 0.106 0.894 44 H 0.058 0.942 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.898 -32.470 2.014 32.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.805 3.195 4 H -0.226 1.226 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.375 4.375 8 H 0.099 0.901 9 N -0.392 5.392 10 C 0.036 3.964 11 C -0.116 4.116 12 H 0.097 0.903 13 C -0.151 4.151 14 C -0.039 4.039 15 N -0.340 5.340 16 C 0.348 3.652 17 O -0.477 6.477 18 C -0.144 4.144 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.080 4.080 22 C -0.036 4.036 23 C -0.079 4.079 24 C -0.155 4.155 25 N -0.245 5.245 26 C -0.042 4.042 27 O -0.107 6.107 28 C -0.088 4.088 29 C -0.004 4.004 30 H 0.058 0.942 31 H 0.202 0.798 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.137 0.863 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.207 0.793 39 H 0.203 0.797 40 H 0.188 0.812 41 H 0.234 0.766 42 H 0.306 0.694 43 H 0.124 0.876 44 H 0.077 0.923 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.507 -32.453 2.545 32.649 hybrid contribution -0.425 2.633 0.432 2.702 sum -2.931 -29.820 2.977 30.111 Atomic orbital electron populations 1.69837 1.06837 1.26093 1.59659 1.25650 0.96375 1.01454 1.03890 0.85168 0.77102 0.78911 0.78328 1.22552 1.20392 1.19913 1.19646 0.91660 0.85286 1.40944 0.90099 1.42645 1.05592 1.01519 1.89466 1.20802 0.93342 0.83656 0.98606 1.22426 0.97257 0.96433 0.95519 0.90326 1.22777 0.97590 0.90940 1.03803 1.23014 0.90857 0.94049 0.96017 1.48483 1.27663 1.08979 1.48905 1.18608 0.79159 0.88790 0.78599 1.90772 1.54668 1.58636 1.43665 1.19639 0.97965 0.91887 1.04950 1.23238 1.00694 0.93449 0.94982 1.21615 0.96506 0.95509 0.98636 1.21743 0.92737 1.00315 0.93251 1.17680 0.91618 0.92965 1.01378 1.21671 0.93069 0.90644 1.02493 1.23779 0.93013 0.97079 1.01667 1.70407 1.16261 1.22573 1.15213 1.29184 0.93531 0.83073 0.98367 1.84537 1.29010 1.41143 1.56002 1.21219 0.95520 0.95454 0.96577 1.22106 0.97927 0.81879 0.98480 0.94156 0.79802 0.94347 0.95623 0.86334 0.88869 0.87011 0.87456 0.79338 0.79701 0.81181 0.76570 0.69432 0.87571 0.92324 0.94292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.80 13.06 21.65 0.28 -61.51 16 2 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 3 Si 0.98 46.95 29.55 68.60 2.03 48.98 16 4 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.24 -13.68 9.99 84.03 0.84 -12.84 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.75 -38.23 5.45 -343.44 -1.87 -40.11 16 10 C 0.16 6.01 5.71 86.38 0.49 6.51 16 11 C -0.10 -2.80 3.10 -9.40 -0.03 -2.83 16 12 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 13 C -0.11 -1.83 6.42 31.78 0.20 -1.62 16 14 C 0.08 1.20 4.88 86.73 0.42 1.63 16 15 N -0.61 -17.01 3.33 -828.56 -2.76 -19.77 16 16 C 0.56 18.38 7.81 86.79 0.68 19.05 16 17 O -0.60 -26.23 16.67 -3.87 -0.06 -26.30 16 18 C -0.14 -3.43 5.87 -20.12 -0.12 -3.54 16 19 C -0.11 -1.42 8.59 22.58 0.19 -1.22 16 20 C -0.11 -0.80 10.02 22.20 0.22 -0.58 16 21 C -0.06 -0.63 9.57 22.58 0.22 -0.42 16 22 C -0.04 -0.67 5.87 -20.13 -0.12 -0.79 16 23 C -0.03 -0.52 7.07 24.24 0.17 -0.34 16 24 C -0.02 -0.26 11.29 83.77 0.95 0.68 16 25 N -0.52 -9.44 11.27 -315.09 -3.55 -12.99 16 26 C 0.18 2.78 13.22 130.46 1.72 4.50 16 27 O -0.22 -4.73 10.58 -7.71 -0.08 -4.81 16 28 C -0.07 -1.76 9.27 22.80 0.21 -1.55 16 29 C 0.12 4.13 6.06 86.85 0.53 4.65 16 30 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 31 H 0.37 20.67 7.53 -92.71 -0.70 19.97 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.03 0.95 8.10 -2.38 -0.02 0.93 16 34 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 1.36 8.04 -2.39 -0.02 1.34 16 36 H 0.11 0.99 6.81 -2.39 -0.02 0.98 16 37 H 0.11 1.06 6.64 -2.39 -0.02 1.05 16 38 H 0.19 1.48 2.75 -8.05 -0.02 1.45 16 39 H 0.19 -0.23 8.06 -2.91 -0.02 -0.25 16 40 H 0.17 0.43 7.02 -2.91 -0.02 0.41 16 41 H 0.22 1.68 7.29 -2.91 -0.02 1.66 16 42 H 0.29 1.30 8.06 -2.91 -0.02 1.27 16 43 H 0.11 3.34 7.55 -2.91 -0.02 3.32 16 44 H 0.06 2.17 8.00 -2.39 -0.02 2.15 16 45 H 0.04 1.68 8.09 -2.39 -0.02 1.66 16 Total: -1.00 -88.93 375.98 1.36 -87.57 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.33 Total: 22.00 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 7.05 Total: 6.94 kcal Atomic # 7 Polarization: -126.48 SS G_CDS: -7.90 Total: -134.38 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.15 Total: -31.11 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -88.93 1.36 -87.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731673880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.733 kcal (2) G-P(sol) polarization free energy of solvation -88.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds