Wall clock time and date at job start Sat Apr 11 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00305 * 2 1 4 4 H 1.48496 * 109.47301 * 270.00311 * 3 2 1 5 5 H 1.48508 * 109.46835 * 29.99959 * 3 2 1 6 6 H 1.48497 * 109.47435 * 149.99795 * 3 2 1 7 7 C 1.38818 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99537 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00041 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99836 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46746 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.88777 * 308.88048 * 11 10 9 13 13 C 1.55160 * 111.00175 * 185.00235 * 11 10 9 14 14 C 1.54324 * 102.94183 * 206.42068 * 13 11 10 15 15 N 1.47023 * 107.27154 * 22.19154 * 14 13 11 16 16 C 1.34771 * 125.64687 * 181.01625 * 15 14 13 17 17 O 1.21555 * 119.99892 * 185.26020 * 16 15 14 18 18 C 1.47866 * 120.00383 * 5.27190 * 16 15 14 19 19 C 1.39689 * 120.07202 * 352.27493 * 18 16 15 20 20 C 1.38052 * 120.14442 * 180.27356 * 19 18 16 21 21 C 1.38098 * 120.30262 * 359.50016 * 20 19 18 22 22 C 1.39647 * 120.14589 * 0.25231 * 21 20 19 23 23 C 1.47847 * 120.07607 * 179.97438 * 22 21 20 24 24 C 1.35767 * 126.57964 * 359.97438 * 23 22 21 25 25 N 1.34139 * 107.51369 * 179.97438 * 24 23 22 26 26 C 1.30360 * 108.90477 * 359.97438 * 25 24 23 27 27 O 1.34004 * 109.03061 * 359.77258 * 26 25 24 28 28 C 1.39310 * 120.07821 * 172.05021 * 18 16 15 29 29 C 1.47428 * 108.70191 * 1.28960 * 15 14 13 30 30 H 0.97005 * 119.99621 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99434 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.46530 * 60.00408 * 10 9 7 33 33 H 1.09004 * 109.46755 * 300.00356 * 10 9 7 34 34 H 1.09001 * 110.71732 * 88.05912 * 13 11 10 35 35 H 1.08998 * 110.87308 * 324.85668 * 13 11 10 36 36 H 1.08997 * 109.88559 * 262.77410 * 14 13 11 37 37 H 1.08998 * 109.87965 * 141.60948 * 14 13 11 38 38 H 1.08001 * 119.92794 * 0.03272 * 19 18 16 39 39 H 1.08000 * 119.84787 * 179.77054 * 20 19 18 40 40 H 1.07999 * 119.92907 * 180.22540 * 21 20 19 41 41 H 1.07995 * 126.24331 * 359.94006 * 24 23 22 42 42 H 1.07997 * 125.48609 * 180.02562 * 26 25 24 43 43 H 1.08003 * 120.14334 * 359.95394 * 28 18 16 44 44 H 1.08993 * 110.36973 * 94.47973 * 29 15 14 45 45 H 1.09000 * 110.36594 * 216.80350 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 1 0.3256 -4.7002 0.7911 13 6 1.7991 -6.1802 0.1230 14 6 0.8243 -7.1639 -0.5579 15 7 -0.0338 -6.3769 -1.4556 16 6 -1.0306 -6.8671 -2.2188 17 8 -1.6146 -6.1386 -2.9971 18 6 -1.4140 -8.2910 -2.1093 19 6 -0.6444 -9.1658 -1.3388 20 6 -0.9978 -10.4967 -1.2400 21 6 -2.1188 -10.9703 -1.8928 22 6 -2.9000 -10.1055 -2.6622 23 6 -4.0996 -10.6142 -3.3609 24 6 -4.5632 -11.8902 -3.3479 25 7 -5.6696 -11.9254 -4.1054 26 6 -5.8977 -10.7312 -4.5758 27 8 -4.9483 -9.8972 -4.1297 28 6 -2.5461 -8.7620 -2.7704 29 6 0.3810 -4.9638 -1.3875 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.6853 -3.7149 0.8879 33 1 2.6840 -3.7141 -0.8922 34 1 1.9451 -6.4448 1.1703 35 1 2.7531 -6.1559 -0.4037 36 1 0.2143 -7.6624 0.1954 37 1 1.3838 -7.9020 -1.1326 38 1 0.2312 -8.8011 -0.8223 39 1 -0.3972 -11.1697 -0.6460 40 1 -2.3918 -12.0118 -1.8085 41 1 -4.1215 -12.7247 -2.8237 42 1 -6.7216 -10.4571 -5.2179 43 1 -3.1471 -8.0888 -3.3639 44 1 1.0869 -4.7368 -2.1863 45 1 -0.4886 -4.3097 -1.4513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731673881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:28 Heat of formation + Delta-G solvation = 56.425240 kcal Electronic energy + Delta-G solvation = -28035.806201 eV Core-core repulsion = 24021.340639 eV Total energy + Delta-G solvation = -4014.465562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.67208 -40.72149 -38.90610 -37.57793 -35.17471 -34.84765 -33.32860 -32.16914 -31.48931 -30.47271 -29.54547 -28.44368 -25.90208 -24.74172 -23.84468 -23.41181 -22.27838 -22.19043 -21.52082 -20.21620 -19.93673 -18.40896 -17.38111 -16.99249 -16.96144 -16.66260 -16.32005 -15.98641 -15.21081 -15.05649 -14.67772 -14.51575 -14.38881 -14.20243 -13.83970 -13.68164 -13.41626 -13.24350 -13.17283 -12.86093 -12.58656 -12.54642 -12.04161 -11.81488 -11.80558 -11.51880 -11.12765 -10.99466 -10.88381 -10.64947 -10.60143 -10.48985 -10.33401 -10.04485 -9.96051 -9.69444 -9.43334 -8.89272 -8.66597 -8.54729 -6.94464 -5.76891 -3.06493 0.13878 0.62809 1.47630 2.25389 2.28332 2.73615 2.86010 3.43746 3.48446 3.50447 3.53152 3.80419 4.09390 4.22698 4.42250 4.45903 4.52595 4.58195 4.61865 4.69261 4.83615 4.86472 4.93692 5.10782 5.18327 5.25843 5.29791 5.42498 5.51929 5.52708 5.57463 5.80657 5.84270 5.86549 5.88396 5.91274 5.91555 5.95054 6.05818 6.18141 6.31057 6.34164 6.40673 6.65306 6.77833 7.25158 7.44449 7.68833 8.08130 8.41223 9.52530 10.09146 10.43238 11.45727 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020681 B = 0.001962 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.555796 B =14266.449397 C =15429.784397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.087 0.913 13 C -0.129 4.129 14 C 0.089 3.911 15 N -0.611 5.611 16 C 0.568 3.432 17 O -0.531 6.531 18 C -0.120 4.120 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.075 4.075 22 C -0.029 4.029 23 C 0.003 3.997 24 C -0.025 4.025 25 N -0.488 5.488 26 C 0.175 3.825 27 O -0.195 6.195 28 C -0.041 4.041 29 C 0.116 3.884 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.025 0.975 33 H 0.022 0.978 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.167 0.833 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.187 0.813 42 H 0.253 0.747 43 H 0.142 0.858 44 H 0.074 0.926 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.083 -28.487 -2.974 28.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.124 4.124 12 H 0.105 0.895 13 C -0.167 4.167 14 C -0.034 4.034 15 N -0.344 5.344 16 C 0.357 3.643 17 O -0.408 6.408 18 C -0.124 4.124 19 C -0.132 4.132 20 C -0.140 4.140 21 C -0.093 4.093 22 C -0.030 4.030 23 C -0.050 4.050 24 C -0.165 4.165 25 N -0.215 5.215 26 C -0.050 4.050 27 O -0.081 6.081 28 C -0.060 4.060 29 C -0.006 4.006 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.184 0.816 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.204 0.796 42 H 0.268 0.732 43 H 0.160 0.840 44 H 0.092 0.908 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.717 -28.448 -3.581 29.058 hybrid contribution 0.361 1.441 0.038 1.486 sum -4.355 -27.008 -3.544 27.585 Atomic orbital electron populations 1.69662 1.05122 1.25729 1.57461 1.24764 0.95529 0.97766 1.02892 0.86183 0.78602 0.83810 0.77530 1.21697 1.21779 1.20766 1.19204 0.91013 0.84109 1.43015 0.91138 1.42368 1.05896 0.99931 1.89557 1.20589 0.92703 0.84784 0.98250 1.22641 0.98545 0.94738 0.96525 0.89476 1.22738 0.98275 0.94348 1.01326 1.22564 0.92802 0.94967 0.93028 1.48426 1.32726 1.10377 1.42874 1.17862 0.79251 0.86921 0.80291 1.90821 1.53476 1.59734 1.36794 1.19866 0.97517 0.93838 1.01132 1.22993 1.00473 0.93552 0.96161 1.21068 0.97000 0.95668 1.00225 1.21233 0.93959 0.99343 0.94773 1.17494 0.92279 0.93700 0.99495 1.21402 0.94035 0.90951 0.98631 1.23289 0.94491 0.96462 1.02210 1.70363 1.16088 1.23056 1.12032 1.28201 0.93833 0.83083 0.99857 1.84528 1.32239 1.40570 1.50777 1.21388 0.94806 0.94113 0.95644 1.22454 1.00303 0.80182 0.97619 0.93451 0.78209 0.95723 0.95989 0.89688 0.90048 0.90371 0.90508 0.81602 0.84449 0.84911 0.79628 0.73169 0.84045 0.90789 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.15 5.55 -59.90 -0.33 -18.49 16 10 C 0.16 3.08 5.72 -4.04 -0.02 3.06 16 11 C -0.10 -1.54 3.06 -88.35 -0.27 -1.81 16 12 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 13 C -0.13 -1.28 6.41 -24.89 -0.16 -1.44 16 14 C 0.09 0.81 4.87 -3.06 -0.01 0.80 16 15 N -0.61 -8.32 3.32 -175.71 -0.58 -8.90 16 16 C 0.57 8.65 7.81 -12.32 -0.10 8.55 16 17 O -0.53 -10.28 16.67 5.32 0.09 -10.19 16 18 C -0.12 -1.43 5.87 -105.02 -0.62 -2.05 16 19 C -0.11 -0.95 8.60 -39.11 -0.34 -1.29 16 20 C -0.12 -0.78 10.02 -39.70 -0.40 -1.18 16 21 C -0.07 -0.52 9.57 -39.11 -0.37 -0.90 16 22 C -0.03 -0.28 5.87 -105.03 -0.62 -0.90 16 23 C 0.00 0.03 7.07 -36.54 -0.26 -0.23 16 24 C -0.02 -0.22 11.29 -17.43 -0.20 -0.41 16 25 N -0.49 -4.71 11.27 -14.68 -0.17 -4.88 16 26 C 0.18 1.36 13.22 52.14 0.69 2.05 16 27 O -0.20 -1.98 10.58 4.24 0.04 -1.93 16 28 C -0.04 -0.48 9.27 -38.77 -0.36 -0.84 16 29 C 0.12 1.86 6.31 -2.41 -0.02 1.84 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.38 10.12 7.67 -40.82 -0.31 9.80 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.42 7.96 -51.93 -0.41 0.00 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.76 8.04 -51.93 -0.42 0.35 16 36 H 0.08 0.59 6.65 -51.93 -0.35 0.24 16 37 H 0.08 0.54 6.82 -51.93 -0.35 0.18 16 38 H 0.17 1.08 2.75 -57.95 -0.16 0.92 16 39 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.13 0.55 7.02 -52.49 -0.37 0.18 16 41 H 0.19 1.05 7.29 -52.49 -0.38 0.66 16 42 H 0.25 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.14 1.85 7.55 -52.48 -0.40 1.46 16 44 H 0.07 1.23 7.91 -51.93 -0.41 0.82 16 45 H 0.08 1.61 8.09 -51.93 -0.42 1.19 16 LS Contribution 376.19 15.07 5.67 5.67 Total: -1.00 -36.45 376.19 -8.51 -44.96 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.64 Total: 6.08 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -3.29 Total: -2.10 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.36 Total: -59.89 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.13 Total: -12.12 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.45 -8.51 -44.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731673881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.385 kcal (2) G-P(sol) polarization free energy of solvation -36.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds