Wall clock time and date at job start Sat Apr 11 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00305 * 2 1 4 4 H 1.48496 * 109.47301 * 270.00311 * 3 2 1 5 5 H 1.48508 * 109.46835 * 29.99959 * 3 2 1 6 6 H 1.48497 * 109.47435 * 149.99795 * 3 2 1 7 7 C 1.38818 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99537 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00041 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99836 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46746 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.88777 * 308.88048 * 11 10 9 13 13 C 1.55160 * 111.00175 * 185.00235 * 11 10 9 14 14 C 1.54324 * 102.94183 * 206.42068 * 13 11 10 15 15 N 1.47023 * 107.27154 * 22.19154 * 14 13 11 16 16 C 1.34771 * 125.64687 * 181.01625 * 15 14 13 17 17 O 1.21555 * 119.99892 * 185.26020 * 16 15 14 18 18 C 1.47866 * 120.00383 * 5.27190 * 16 15 14 19 19 C 1.39689 * 120.07202 * 352.27493 * 18 16 15 20 20 C 1.38052 * 120.14442 * 180.27356 * 19 18 16 21 21 C 1.38098 * 120.30262 * 359.50016 * 20 19 18 22 22 C 1.39647 * 120.14589 * 0.25231 * 21 20 19 23 23 C 1.47847 * 120.07607 * 179.97438 * 22 21 20 24 24 C 1.35767 * 126.57964 * 359.97438 * 23 22 21 25 25 N 1.34139 * 107.51369 * 179.97438 * 24 23 22 26 26 C 1.30360 * 108.90477 * 359.97438 * 25 24 23 27 27 O 1.34004 * 109.03061 * 359.77258 * 26 25 24 28 28 C 1.39310 * 120.07821 * 172.05021 * 18 16 15 29 29 C 1.47428 * 108.70191 * 1.28960 * 15 14 13 30 30 H 0.97005 * 119.99621 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99434 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.46530 * 60.00408 * 10 9 7 33 33 H 1.09004 * 109.46755 * 300.00356 * 10 9 7 34 34 H 1.09001 * 110.71732 * 88.05912 * 13 11 10 35 35 H 1.08998 * 110.87308 * 324.85668 * 13 11 10 36 36 H 1.08997 * 109.88559 * 262.77410 * 14 13 11 37 37 H 1.08998 * 109.87965 * 141.60948 * 14 13 11 38 38 H 1.08001 * 119.92794 * 0.03272 * 19 18 16 39 39 H 1.08000 * 119.84787 * 179.77054 * 20 19 18 40 40 H 1.07999 * 119.92907 * 180.22540 * 21 20 19 41 41 H 1.07995 * 126.24331 * 359.94006 * 24 23 22 42 42 H 1.07997 * 125.48609 * 180.02562 * 26 25 24 43 43 H 1.08003 * 120.14334 * 359.95394 * 28 18 16 44 44 H 1.08993 * 110.36973 * 94.47973 * 29 15 14 45 45 H 1.09000 * 110.36594 * 216.80350 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 1 0.3256 -4.7002 0.7911 13 6 1.7991 -6.1802 0.1230 14 6 0.8243 -7.1639 -0.5579 15 7 -0.0338 -6.3769 -1.4556 16 6 -1.0306 -6.8671 -2.2188 17 8 -1.6146 -6.1386 -2.9971 18 6 -1.4140 -8.2910 -2.1093 19 6 -0.6444 -9.1658 -1.3388 20 6 -0.9978 -10.4967 -1.2400 21 6 -2.1188 -10.9703 -1.8928 22 6 -2.9000 -10.1055 -2.6622 23 6 -4.0996 -10.6142 -3.3609 24 6 -4.5632 -11.8902 -3.3479 25 7 -5.6696 -11.9254 -4.1054 26 6 -5.8977 -10.7312 -4.5758 27 8 -4.9483 -9.8972 -4.1297 28 6 -2.5461 -8.7620 -2.7704 29 6 0.3810 -4.9638 -1.3875 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.6853 -3.7149 0.8879 33 1 2.6840 -3.7141 -0.8922 34 1 1.9451 -6.4448 1.1703 35 1 2.7531 -6.1559 -0.4037 36 1 0.2143 -7.6624 0.1954 37 1 1.3838 -7.9020 -1.1326 38 1 0.2312 -8.8011 -0.8223 39 1 -0.3972 -11.1697 -0.6460 40 1 -2.3918 -12.0118 -1.8085 41 1 -4.1215 -12.7247 -2.8237 42 1 -6.7216 -10.4571 -5.2179 43 1 -3.1471 -8.0888 -3.3639 44 1 1.0869 -4.7368 -2.1863 45 1 -0.4886 -4.3097 -1.4513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731673881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:27 Heat of formation + Delta-G solvation = 29.109934 kcal Electronic energy + Delta-G solvation = -28036.990682 eV Core-core repulsion = 24021.340639 eV Total energy + Delta-G solvation = -4015.650043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.32670 -41.70596 -39.74307 -38.76730 -36.54117 -35.85043 -34.43195 -33.46384 -32.36949 -31.83939 -30.51361 -29.41798 -27.32828 -25.91934 -24.76658 -24.37755 -23.58786 -22.95512 -22.24916 -21.43642 -20.93133 -19.31779 -18.95238 -18.11054 -17.65759 -17.59307 -17.24181 -16.95074 -16.57912 -16.04165 -15.93715 -15.54808 -15.30624 -15.14757 -14.99291 -14.81780 -14.71118 -14.25821 -14.19324 -13.98283 -13.71916 -13.57657 -13.23674 -13.06968 -12.77722 -12.61008 -12.49505 -12.44121 -12.14320 -12.02695 -11.78727 -11.72118 -11.62732 -11.41415 -11.11569 -11.00842 -10.93884 -10.17806 -9.74577 -9.19269 -9.00698 -7.95763 -5.24943 -0.50156 -0.14563 0.84381 1.46113 1.48547 1.56818 1.60297 1.68013 1.77841 1.84231 2.55386 2.77066 3.23338 3.31986 3.38210 3.51438 3.59429 3.61187 3.83460 3.88108 3.97021 4.05910 4.13999 4.19035 4.24042 4.28756 4.41412 4.46767 4.55166 4.64953 4.72060 4.78390 4.81056 4.84264 4.88398 5.00715 5.05574 5.13326 5.23915 5.27333 5.28329 5.29538 5.31972 5.42211 5.50083 5.75885 6.26049 6.38248 6.61693 6.94976 7.31934 8.09054 8.29716 9.28002 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020681 B = 0.001962 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.555796 B =14266.449397 C =15429.784397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.975 3.025 4 H -0.290 1.290 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.750 5.750 10 C 0.162 3.838 11 C -0.097 4.097 12 H 0.077 0.923 13 C -0.114 4.114 14 C 0.081 3.919 15 N -0.609 5.609 16 C 0.557 3.443 17 O -0.595 6.595 18 C -0.142 4.142 19 C -0.106 4.106 20 C -0.106 4.106 21 C -0.063 4.063 22 C -0.036 4.036 23 C -0.026 4.026 24 C -0.017 4.017 25 N -0.517 5.517 26 C 0.183 3.817 27 O -0.220 6.220 28 C -0.068 4.068 29 C 0.118 3.882 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.039 0.961 33 H 0.025 0.975 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.190 0.810 39 H 0.185 0.815 40 H 0.171 0.829 41 H 0.218 0.782 42 H 0.291 0.709 43 H 0.106 0.894 44 H 0.062 0.938 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.721 -32.600 -1.164 32.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.804 3.196 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.374 4.374 8 H 0.099 0.901 9 N -0.392 5.392 10 C 0.036 3.964 11 C -0.116 4.116 12 H 0.096 0.904 13 C -0.152 4.152 14 C -0.039 4.039 15 N -0.340 5.340 16 C 0.349 3.651 17 O -0.477 6.477 18 C -0.145 4.145 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.081 4.081 22 C -0.037 4.037 23 C -0.079 4.079 24 C -0.156 4.156 25 N -0.245 5.245 26 C -0.041 4.041 27 O -0.107 6.107 28 C -0.087 4.087 29 C -0.005 4.005 30 H 0.058 0.942 31 H 0.202 0.798 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.135 0.865 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.206 0.794 39 H 0.203 0.797 40 H 0.188 0.812 41 H 0.234 0.766 42 H 0.306 0.694 43 H 0.125 0.875 44 H 0.080 0.920 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.278 -32.628 -1.735 32.754 hybrid contribution -0.402 2.594 -0.568 2.685 sum -2.680 -30.035 -2.303 30.242 Atomic orbital electron populations 1.69841 1.06821 1.26007 1.59733 1.25643 0.96384 1.01424 1.03922 0.85105 0.77833 0.79314 0.77309 1.21718 1.22394 1.18852 1.19683 0.91666 0.85281 1.40789 0.90104 1.42659 1.05587 1.01518 1.89438 1.20798 0.93350 0.83666 0.98588 1.22459 0.97945 0.96326 0.94879 0.90424 1.22774 0.98167 0.90538 1.03693 1.23006 0.92647 0.94974 0.93281 1.48480 1.32828 1.09684 1.43042 1.18598 0.78762 0.88313 0.79444 1.90770 1.55680 1.61631 1.39644 1.19644 0.98895 0.92135 1.03789 1.23239 1.00262 0.93944 0.94914 1.21610 0.96490 0.95112 0.99080 1.21741 0.93084 1.00557 0.92670 1.17682 0.92838 0.92980 1.00151 1.21669 0.94757 0.91582 0.99855 1.23778 0.93801 0.96646 1.01325 1.70406 1.16967 1.23861 1.13230 1.29185 0.93625 0.82453 0.98885 1.84537 1.33051 1.41735 1.51360 1.21219 0.95477 0.95152 0.96899 1.22198 0.98275 0.81525 0.98493 0.94157 0.79796 0.94276 0.95713 0.86520 0.88771 0.87543 0.86945 0.79350 0.79730 0.81201 0.76586 0.69428 0.87539 0.92011 0.94256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.54 13.06 21.65 0.28 -61.26 16 2 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 3 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 4 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.24 -13.59 9.99 84.04 0.84 -12.75 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.75 -38.11 5.55 -343.44 -1.91 -40.02 16 10 C 0.16 6.01 5.72 86.38 0.49 6.50 16 11 C -0.10 -2.79 3.06 -9.33 -0.03 -2.82 16 12 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 13 C -0.11 -1.84 6.41 31.78 0.20 -1.64 16 14 C 0.08 1.20 4.87 86.73 0.42 1.62 16 15 N -0.61 -16.79 3.32 -828.09 -2.75 -19.55 16 16 C 0.56 18.17 7.81 86.79 0.68 18.85 16 17 O -0.59 -25.90 16.67 -3.89 -0.06 -25.96 16 18 C -0.14 -3.40 5.87 -20.12 -0.12 -3.52 16 19 C -0.11 -1.41 8.60 22.58 0.19 -1.21 16 20 C -0.11 -0.80 10.02 22.19 0.22 -0.57 16 21 C -0.06 -0.63 9.57 22.58 0.22 -0.41 16 22 C -0.04 -0.67 5.87 -20.13 -0.12 -0.79 16 23 C -0.03 -0.51 7.07 24.24 0.17 -0.34 16 24 C -0.02 -0.26 11.29 83.77 0.95 0.68 16 25 N -0.52 -9.40 11.27 -315.08 -3.55 -12.95 16 26 C 0.18 2.76 13.22 130.46 1.72 4.48 16 27 O -0.22 -4.69 10.58 -7.74 -0.08 -4.78 16 28 C -0.07 -1.74 9.27 22.79 0.21 -1.53 16 29 C 0.12 4.02 6.31 86.93 0.55 4.57 16 30 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 31 H 0.37 20.59 7.67 -92.71 -0.71 19.87 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.02 0.92 7.96 -2.38 -0.02 0.90 16 34 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 1.35 8.04 -2.39 -0.02 1.33 16 36 H 0.11 1.06 6.65 -2.39 -0.02 1.05 16 37 H 0.11 0.97 6.82 -2.39 -0.02 0.96 16 38 H 0.19 1.46 2.75 -8.05 -0.02 1.44 16 39 H 0.19 -0.23 8.06 -2.91 -0.02 -0.25 16 40 H 0.17 0.43 7.02 -2.91 -0.02 0.41 16 41 H 0.22 1.67 7.29 -2.91 -0.02 1.65 16 42 H 0.29 1.26 8.06 -2.91 -0.02 1.23 16 43 H 0.11 3.32 7.55 -2.91 -0.02 3.30 16 44 H 0.06 2.21 7.91 -2.39 -0.02 2.19 16 45 H 0.04 1.67 8.09 -2.39 -0.02 1.65 16 Total: -1.00 -88.49 376.19 1.34 -87.14 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.32 Total: 21.67 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 7.07 Total: 6.80 kcal Atomic # 7 Polarization: -125.85 SS G_CDS: -7.93 Total: -133.77 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.15 Total: -30.74 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -88.49 1.34 -87.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731673881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.253 kcal (2) G-P(sol) polarization free energy of solvation -88.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds