Wall clock time and date at job start Sat Apr 11 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00101 * 2 1 4 4 H 1.48504 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47243 * 299.99936 * 3 2 1 6 6 H 1.48506 * 109.46858 * 59.99799 * 3 2 1 7 7 C 1.38817 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99852 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99597 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99794 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46891 * 35.00066 * 10 9 7 12 12 C 1.52995 * 109.47434 * 154.99873 * 10 9 7 13 13 N 1.46499 * 109.47089 * 305.00282 * 12 10 9 14 14 C 1.34778 * 119.99951 * 179.97438 * 13 12 10 15 15 O 1.21604 * 120.00222 * 0.02562 * 14 13 12 16 16 C 1.47403 * 119.99982 * 179.97438 * 14 13 12 17 17 C 1.47100 * 128.56533 * 0.02874 * 16 14 13 18 18 N 1.30014 * 105.33276 * 179.97438 * 17 16 14 19 19 O 1.20660 * 112.29699 * 0.02562 * 18 17 16 20 20 C 1.33493 * 113.16098 * 359.74575 * 19 18 17 21 21 C 1.50693 * 126.83385 * 180.30426 * 20 19 18 22 22 C 1.53003 * 117.49831 * 8.85236 * 21 20 19 23 23 C 1.53000 * 117.49782 * 300.19766 * 21 20 19 24 24 C 1.50702 * 109.47502 * 275.00140 * 10 9 7 25 25 C 1.38234 * 120.00272 * 139.99583 * 24 10 9 26 26 C 1.38230 * 119.99880 * 179.97438 * 25 24 10 27 27 C 1.38235 * 120.00326 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99814 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99464 * 320.02298 * 24 10 9 30 30 H 0.97003 * 119.99826 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00718 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.47040 * 65.00178 * 12 10 9 33 33 H 1.08998 * 109.47773 * 185.00221 * 12 10 9 34 34 H 0.96993 * 120.00128 * 0.02562 * 13 12 10 35 35 H 1.08002 * 127.33338 * 359.96557 * 17 16 14 36 36 H 1.08995 * 115.55613 * 154.52990 * 21 20 19 37 37 H 1.09003 * 117.49861 * 0.02562 * 22 21 20 38 38 H 1.09001 * 117.49462 * 145.01722 * 22 21 20 39 39 H 1.09000 * 117.50289 * 214.97670 * 23 21 20 40 40 H 1.09008 * 117.50046 * 359.97342 * 23 21 20 41 41 H 1.08001 * 119.99769 * 0.02562 * 25 24 10 42 42 H 1.08000 * 120.00376 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.00616 * 179.72578 * 27 26 25 44 44 H 1.08001 * 120.00299 * 179.97438 * 28 27 26 45 45 H 1.07997 * 120.00481 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5900 12 6 1.1809 -4.7521 0.6102 13 7 0.7343 -4.3354 1.9417 14 6 -0.0555 -5.1472 2.6723 15 8 -0.3970 -6.2258 2.2263 16 6 -0.5044 -4.7283 4.0123 17 6 -0.2082 -3.4786 4.7295 18 7 -0.8291 -3.5798 5.8673 19 8 -1.4267 -4.6228 5.9716 20 6 -1.3069 -5.4062 4.8974 21 6 -1.9270 -6.7648 4.6964 22 6 -2.9504 -7.2346 5.7323 23 6 -1.5561 -7.8651 5.6928 24 6 2.4165 -4.0299 -1.4149 25 6 3.6540 -4.5799 -1.6924 26 6 3.9826 -4.9226 -2.9906 27 6 3.0734 -4.7160 -4.0112 28 6 1.8355 -4.1671 -3.7335 29 6 1.5079 -3.8218 -2.4357 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 0.3133 -4.9200 -0.0280 33 1 1.7558 -5.6745 0.6919 34 1 1.0064 -3.4750 2.2973 35 1 0.3966 -2.6530 4.3845 36 1 -2.0892 -7.0589 3.6595 37 1 -3.1754 -6.5606 6.5590 38 1 -3.7857 -7.8378 5.3768 39 1 -1.4748 -8.8829 5.3115 40 1 -0.8632 -7.6063 6.4936 41 1 4.3638 -4.7424 -0.8948 42 1 4.9492 -5.3526 -3.2075 43 1 3.3317 -4.9797 -5.0262 44 1 1.1253 -4.0053 -4.5310 45 1 0.5411 -3.3922 -2.2189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732025426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:31 Heat of formation + Delta-G solvation = 89.723905 kcal Electronic energy + Delta-G solvation = -28796.227979 eV Core-core repulsion = 24783.206355 eV Total energy + Delta-G solvation = -4013.021624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.91758 -39.49041 -38.75719 -37.54172 -35.94142 -33.89242 -33.44786 -32.02177 -31.56939 -30.44502 -29.60782 -27.80094 -24.93327 -24.16166 -23.57302 -22.75064 -22.60093 -21.96059 -20.98852 -20.29445 -19.83260 -17.96772 -17.70637 -17.36688 -16.72921 -16.34423 -15.89618 -15.48197 -15.28294 -14.79870 -14.56734 -14.53719 -14.18307 -13.89658 -13.58236 -13.36525 -13.01340 -12.88375 -12.81662 -12.45290 -12.37284 -12.03064 -11.85518 -11.66247 -11.32197 -11.18234 -11.00707 -10.87748 -10.75852 -10.68559 -10.50005 -10.37267 -10.15207 -9.92590 -9.83700 -9.28939 -9.13765 -8.74246 -8.43912 -8.22820 -7.18641 -5.91593 -3.23332 1.01908 1.82598 1.83114 1.89625 2.70301 3.29901 3.34491 3.41916 3.43306 3.44313 3.62199 4.12286 4.26222 4.31462 4.46485 4.48599 4.59698 4.67372 5.04023 5.19796 5.22376 5.31368 5.36131 5.37239 5.40453 5.47011 5.51385 5.57208 5.62320 5.73109 5.80294 5.81683 5.84368 5.90983 6.00177 6.05814 6.21338 6.36680 6.44856 6.59227 6.69407 6.90279 6.98751 7.24547 7.49551 7.59967 7.76683 8.15951 8.24193 8.39316 9.37685 9.86904 10.23525 11.29591 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009369 B = 0.003382 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.841634 B = 8277.084601 C =10650.085481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.004 4.004 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.714 5.714 10 C 0.197 3.803 11 H 0.066 0.934 12 C 0.122 3.878 13 N -0.702 5.702 14 C 0.596 3.404 15 O -0.545 6.545 16 C -0.250 4.250 17 C 0.032 3.968 18 N -0.356 5.356 19 O 0.088 5.912 20 C 0.071 3.929 21 C -0.085 4.085 22 C -0.168 4.168 23 C -0.157 4.157 24 C -0.082 4.082 25 C -0.120 4.120 26 C -0.130 4.130 27 C -0.134 4.134 28 C -0.128 4.128 29 C -0.083 4.083 30 H 0.256 0.744 31 H 0.387 0.613 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.411 0.589 35 H 0.205 0.795 36 H 0.153 0.847 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.210 -14.403 5.742 15.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.355 5.355 10 C 0.086 3.914 11 H 0.084 0.916 12 C -0.002 4.002 13 N -0.353 5.353 14 C 0.382 3.618 15 O -0.425 6.425 16 C -0.257 4.257 17 C -0.151 4.151 18 N -0.062 5.062 19 O 0.029 5.971 20 C 0.006 3.994 21 C -0.104 4.104 22 C -0.205 4.205 23 C -0.194 4.194 24 C -0.085 4.085 25 C -0.139 4.139 26 C -0.148 4.148 27 C -0.152 4.152 28 C -0.146 4.146 29 C -0.101 4.101 30 H 0.066 0.934 31 H 0.222 0.778 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.248 0.752 35 H 0.222 0.778 36 H 0.170 0.830 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.461 -14.200 6.524 15.634 hybrid contribution 0.646 1.509 -0.930 1.887 sum 0.185 -12.691 5.594 13.870 Atomic orbital electron populations 1.69662 1.05057 1.25813 1.56880 1.24720 0.95434 0.97641 1.02325 0.86173 0.78922 0.84148 0.77239 1.20505 1.21827 1.21817 1.19225 0.91056 0.83656 1.43616 0.91001 1.42473 1.05806 0.99254 1.87987 1.19488 0.95036 0.86476 0.90358 0.91593 1.21629 0.98791 0.97321 0.82463 1.45737 1.50125 1.21651 1.17777 1.16731 0.78485 0.84045 0.82536 1.90746 1.57586 1.22326 1.71826 1.22058 1.07891 0.96818 0.98917 1.26524 1.00170 0.98614 0.89809 1.73661 1.10399 1.01129 1.21011 1.84531 1.54754 1.20976 1.36824 1.23696 0.95494 0.93946 0.86227 1.20704 1.03864 0.86403 0.99441 1.23131 0.93192 1.03518 1.00686 1.23089 0.98546 0.97305 1.00445 1.20953 0.93627 0.95848 0.98110 1.21009 0.96629 0.99845 0.96390 1.20984 0.99037 1.01511 0.93280 1.20986 0.94500 1.01188 0.98532 1.21111 0.96776 0.99886 0.96812 1.21007 1.00070 0.97041 0.92024 0.93392 0.77837 0.91308 0.91218 0.75210 0.77782 0.82961 0.87809 0.87447 0.87317 0.88268 0.86739 0.86987 0.87080 0.86849 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.88 13.06 55.49 0.72 -25.16 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 3 Si 0.90 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.09 9.92 -15.06 -0.15 -6.24 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.71 -15.47 3.80 -54.55 -0.21 -15.67 16 10 C 0.20 3.47 2.65 -69.08 -0.18 3.29 16 11 H 0.07 1.15 7.94 -51.93 -0.41 0.74 16 12 C 0.12 1.95 5.21 -4.04 -0.02 1.93 16 13 N -0.70 -11.01 5.38 -61.39 -0.33 -11.34 16 14 C 0.60 9.61 7.81 -12.53 -0.10 9.51 16 15 O -0.55 -9.76 15.33 5.27 0.08 -9.68 16 16 C -0.25 -3.66 6.47 -102.89 -0.67 -4.32 16 17 C 0.03 0.44 11.95 -14.73 -0.18 0.27 16 18 N -0.36 -5.21 12.01 31.80 0.38 -4.83 16 19 O 0.09 1.20 10.86 18.65 0.20 1.40 16 20 C 0.07 0.93 7.00 -34.63 -0.24 0.69 16 21 C -0.09 -0.93 5.74 -91.77 -0.53 -1.45 16 22 C -0.17 -1.34 10.19 -26.70 -0.27 -1.62 16 23 C -0.16 -1.30 10.24 -26.70 -0.27 -1.58 16 24 C -0.08 -1.42 4.92 -104.62 -0.51 -1.93 16 25 C -0.12 -1.86 9.67 -39.59 -0.38 -2.24 16 26 C -0.13 -1.85 10.05 -39.59 -0.40 -2.25 16 27 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 28 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 29 C -0.08 -1.48 9.32 -39.58 -0.37 -1.85 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.39 9.11 7.80 -40.82 -0.32 8.79 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.41 6.44 7.50 -40.82 -0.31 6.13 16 35 H 0.21 2.50 7.88 -52.49 -0.41 2.09 16 36 H 0.15 1.82 6.96 -51.93 -0.36 1.46 16 37 H 0.10 0.81 8.02 -51.93 -0.42 0.39 16 38 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.10 0.81 8.14 -51.92 -0.42 0.38 16 41 H 0.11 1.55 8.04 -52.49 -0.42 1.13 16 42 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 44 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 45 H 0.12 2.35 7.72 -52.49 -0.41 1.95 16 LS Contribution 390.92 15.07 5.89 5.89 Total: -1.00 -29.63 390.92 -9.43 -39.05 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -5.98 Total: 16.84 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -5.16 Total: -12.74 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.57 Total: -57.01 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.28 Total: -8.28 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.63 -9.43 -39.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732025426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.778 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds