Wall clock time and date at job start Sat Apr 11 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00101 * 2 1 4 4 H 1.48504 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47243 * 299.99936 * 3 2 1 6 6 H 1.48506 * 109.46858 * 59.99799 * 3 2 1 7 7 C 1.38817 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99852 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99597 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99794 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46891 * 35.00066 * 10 9 7 12 12 C 1.52995 * 109.47434 * 154.99873 * 10 9 7 13 13 N 1.46499 * 109.47089 * 305.00282 * 12 10 9 14 14 C 1.34778 * 119.99951 * 179.97438 * 13 12 10 15 15 O 1.21604 * 120.00222 * 0.02562 * 14 13 12 16 16 C 1.47403 * 119.99982 * 179.97438 * 14 13 12 17 17 C 1.47100 * 128.56533 * 0.02874 * 16 14 13 18 18 N 1.30014 * 105.33276 * 179.97438 * 17 16 14 19 19 O 1.20660 * 112.29699 * 0.02562 * 18 17 16 20 20 C 1.33493 * 113.16098 * 359.74575 * 19 18 17 21 21 C 1.50693 * 126.83385 * 180.30426 * 20 19 18 22 22 C 1.53003 * 117.49831 * 8.85236 * 21 20 19 23 23 C 1.53000 * 117.49782 * 300.19766 * 21 20 19 24 24 C 1.50702 * 109.47502 * 275.00140 * 10 9 7 25 25 C 1.38234 * 120.00272 * 139.99583 * 24 10 9 26 26 C 1.38230 * 119.99880 * 179.97438 * 25 24 10 27 27 C 1.38235 * 120.00326 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99814 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99464 * 320.02298 * 24 10 9 30 30 H 0.97003 * 119.99826 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00718 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.47040 * 65.00178 * 12 10 9 33 33 H 1.08998 * 109.47773 * 185.00221 * 12 10 9 34 34 H 0.96993 * 120.00128 * 0.02562 * 13 12 10 35 35 H 1.08002 * 127.33338 * 359.96557 * 17 16 14 36 36 H 1.08995 * 115.55613 * 154.52990 * 21 20 19 37 37 H 1.09003 * 117.49861 * 0.02562 * 22 21 20 38 38 H 1.09001 * 117.49462 * 145.01722 * 22 21 20 39 39 H 1.09000 * 117.50289 * 214.97670 * 23 21 20 40 40 H 1.09008 * 117.50046 * 359.97342 * 23 21 20 41 41 H 1.08001 * 119.99769 * 0.02562 * 25 24 10 42 42 H 1.08000 * 120.00376 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.00616 * 179.72578 * 27 26 25 44 44 H 1.08001 * 120.00299 * 179.97438 * 28 27 26 45 45 H 1.07997 * 120.00481 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5900 12 6 1.1809 -4.7521 0.6102 13 7 0.7343 -4.3354 1.9417 14 6 -0.0555 -5.1472 2.6723 15 8 -0.3970 -6.2258 2.2263 16 6 -0.5044 -4.7283 4.0123 17 6 -0.2082 -3.4786 4.7295 18 7 -0.8291 -3.5798 5.8673 19 8 -1.4267 -4.6228 5.9716 20 6 -1.3069 -5.4062 4.8974 21 6 -1.9270 -6.7648 4.6964 22 6 -2.9504 -7.2346 5.7323 23 6 -1.5561 -7.8651 5.6928 24 6 2.4165 -4.0299 -1.4149 25 6 3.6540 -4.5799 -1.6924 26 6 3.9826 -4.9226 -2.9906 27 6 3.0734 -4.7160 -4.0112 28 6 1.8355 -4.1671 -3.7335 29 6 1.5079 -3.8218 -2.4357 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 0.3133 -4.9200 -0.0280 33 1 1.7558 -5.6745 0.6919 34 1 1.0064 -3.4750 2.2973 35 1 0.3966 -2.6530 4.3845 36 1 -2.0892 -7.0589 3.6595 37 1 -3.1754 -6.5606 6.5590 38 1 -3.7857 -7.8378 5.3768 39 1 -1.4748 -8.8829 5.3115 40 1 -0.8632 -7.6063 6.4936 41 1 4.3638 -4.7424 -0.8948 42 1 4.9492 -5.3526 -3.2075 43 1 3.3317 -4.9797 -5.0262 44 1 1.1253 -4.0053 -4.5310 45 1 0.5411 -3.3922 -2.2189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732025426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:30 Heat of formation + Delta-G solvation = 73.832135 kcal Electronic energy + Delta-G solvation = -28796.917098 eV Core-core repulsion = 24783.206355 eV Total energy + Delta-G solvation = -4013.710743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.02376 -40.80238 -40.01486 -38.32421 -37.38152 -35.30162 -34.78308 -33.58522 -32.64822 -31.68707 -31.17688 -29.19647 -26.31152 -25.36267 -25.02913 -23.96688 -23.29894 -23.18983 -22.07987 -21.59120 -21.09080 -19.38116 -18.95690 -18.79597 -17.77202 -17.61215 -17.09627 -16.82228 -16.44838 -16.22145 -15.86034 -15.73778 -15.65491 -15.18892 -14.84896 -14.74408 -14.39670 -14.16050 -14.05288 -13.80818 -13.43627 -13.31803 -12.92924 -12.82785 -12.70459 -12.43688 -12.41986 -12.17717 -12.14609 -11.98096 -11.83153 -11.62559 -11.49709 -11.48255 -11.19840 -10.98692 -10.36021 -10.01542 -9.66210 -9.51907 -9.03095 -7.92552 -5.21614 -0.06756 0.59940 0.66419 0.69556 1.46864 1.50001 1.57175 1.63916 2.08625 2.21433 2.55892 2.84448 3.03356 3.18577 3.20424 3.41861 3.43346 3.78309 3.80250 3.98554 4.01399 4.06756 4.17300 4.19376 4.24464 4.36528 4.38417 4.42956 4.54416 4.71034 4.74120 4.75819 4.81073 4.85199 4.96267 5.04135 5.11139 5.21475 5.23296 5.32255 5.39669 5.56229 5.71025 5.75067 5.95303 6.25846 6.29316 6.47041 7.05860 7.10998 7.36196 8.03765 8.30154 9.29470 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009369 B = 0.003382 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.841634 B = 8277.084601 C =10650.085481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.061 4.061 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.302 1.302 6 H -0.296 1.296 7 C -0.227 4.227 8 H 0.075 0.925 9 N -0.718 5.718 10 C 0.203 3.797 11 H 0.073 0.927 12 C 0.134 3.866 13 N -0.700 5.700 14 C 0.598 3.402 15 O -0.566 6.566 16 C -0.277 4.277 17 C 0.033 3.967 18 N -0.372 5.372 19 O 0.091 5.909 20 C 0.086 3.914 21 C -0.117 4.117 22 C -0.149 4.149 23 C -0.143 4.143 24 C -0.100 4.100 25 C -0.126 4.126 26 C -0.127 4.127 27 C -0.131 4.131 28 C -0.137 4.137 29 C -0.110 4.110 30 H 0.248 0.752 31 H 0.375 0.625 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.411 0.589 35 H 0.217 0.783 36 H 0.140 0.860 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.135 0.865 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.127 0.873 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 -16.102 5.769 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.254 4.254 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.230 1.230 6 H -0.223 1.223 7 C -0.359 4.359 8 H 0.093 0.907 9 N -0.358 5.358 10 C 0.094 3.906 11 H 0.091 0.909 12 C 0.009 3.991 13 N -0.350 5.350 14 C 0.385 3.615 15 O -0.448 6.448 16 C -0.284 4.284 17 C -0.149 4.149 18 N -0.079 5.079 19 O 0.034 5.966 20 C 0.022 3.978 21 C -0.136 4.136 22 C -0.186 4.186 23 C -0.180 4.180 24 C -0.103 4.103 25 C -0.144 4.144 26 C -0.144 4.144 27 C -0.149 4.149 28 C -0.155 4.155 29 C -0.128 4.128 30 H 0.057 0.943 31 H 0.208 0.792 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.248 0.752 35 H 0.233 0.767 36 H 0.157 0.843 37 H 0.126 0.874 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.120 0.880 41 H 0.153 0.847 42 H 0.164 0.836 43 H 0.161 0.839 44 H 0.145 0.855 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.209 -15.934 6.557 17.273 hybrid contribution 0.170 1.881 -0.983 2.129 sum 1.379 -14.053 5.575 15.181 Atomic orbital electron populations 1.69798 1.06301 1.25636 1.59502 1.25312 0.96008 1.00243 1.03870 0.85298 0.78481 0.81039 0.76256 1.19239 1.23033 1.22309 1.19485 0.91219 0.84619 1.40548 0.90707 1.42501 1.05275 1.00045 1.87979 1.19563 0.94874 0.85058 0.91119 0.90930 1.21490 0.98044 0.97297 0.82233 1.45705 1.50141 1.21602 1.17599 1.16876 0.78023 0.83676 0.82936 1.90724 1.58403 1.23187 1.72467 1.21974 1.09719 0.97861 0.98861 1.26724 0.99935 0.98719 0.89536 1.73640 1.11110 1.01732 1.21382 1.84517 1.54542 1.20760 1.36821 1.24143 0.93953 0.94329 0.85403 1.20771 1.06945 0.86047 0.99805 1.23274 0.93474 1.02816 0.99005 1.23232 0.98820 0.97039 0.98942 1.20838 0.94747 0.97566 0.97189 1.21281 0.95927 0.99305 0.97912 1.21410 1.00303 1.00234 0.92487 1.21385 0.93515 0.99704 1.00285 1.21341 0.98090 0.99892 0.96216 1.20951 0.99469 0.98800 0.93590 0.94292 0.79217 0.92852 0.89760 0.75188 0.76667 0.84283 0.87413 0.85409 0.85645 0.87976 0.84723 0.83603 0.83915 0.85534 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.34 13.06 21.65 0.28 -55.06 16 2 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 3 Si 0.96 44.21 29.55 68.60 2.03 46.24 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 6 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 7 C -0.23 -11.36 9.92 84.04 0.83 -10.52 16 8 H 0.08 3.66 7.83 -2.91 -0.02 3.64 16 9 N -0.72 -31.79 3.80 -326.51 -1.24 -33.03 16 10 C 0.20 7.15 2.65 44.24 0.12 7.27 16 11 H 0.07 2.46 7.94 -2.39 -0.02 2.44 16 12 C 0.13 4.33 5.21 86.38 0.45 4.78 16 13 N -0.70 -22.42 5.38 -466.40 -2.51 -24.93 16 14 C 0.60 19.67 7.81 86.66 0.68 20.35 16 15 O -0.57 -20.65 15.33 -4.04 -0.06 -20.71 16 16 C -0.28 -8.24 6.47 -18.74 -0.12 -8.36 16 17 C 0.03 0.95 11.95 87.29 1.04 1.99 16 18 N -0.37 -10.85 12.01 -54.20 -0.65 -11.50 16 19 O 0.09 2.44 10.86 76.98 0.84 3.27 16 20 C 0.09 2.27 7.00 25.48 0.18 2.45 16 21 C -0.12 -2.45 5.74 -11.54 -0.07 -2.52 16 22 C -0.15 -2.07 10.19 30.62 0.31 -1.76 16 23 C -0.14 -2.10 10.24 30.62 0.31 -1.79 16 24 C -0.10 -3.42 4.92 -19.87 -0.10 -3.52 16 25 C -0.13 -3.60 9.67 22.27 0.22 -3.39 16 26 C -0.13 -3.17 10.05 22.27 0.22 -2.95 16 27 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 28 C -0.14 -4.20 10.05 22.27 0.22 -3.98 16 29 C -0.11 -3.97 9.32 22.27 0.21 -3.76 16 30 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.38 18.42 7.80 -92.71 -0.72 17.69 16 32 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.41 13.17 7.50 -92.71 -0.70 12.47 16 35 H 0.22 5.36 7.88 -2.91 -0.02 5.34 16 36 H 0.14 3.35 6.96 -2.39 -0.02 3.33 16 37 H 0.11 1.45 8.02 -2.39 -0.02 1.43 16 38 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.13 3.24 8.04 -2.91 -0.02 3.21 16 42 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 43 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 44 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 45 H 0.10 3.91 7.72 -2.91 -0.02 3.89 16 Total: -1.00 -64.53 390.92 3.50 -61.03 By element: Atomic # 1 Polarization: 46.75 SS G_CDS: -0.38 Total: 46.37 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 5.20 Total: -11.67 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -4.12 Total: -124.52 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.77 Total: -17.44 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -64.53 3.50 -61.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732025426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.861 kcal (2) G-P(sol) polarization free energy of solvation -64.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds