Wall clock time and date at job start Sat Apr 11 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 119.99946 * 2 1 4 4 H 1.48498 * 109.47377 * 269.99611 * 3 2 1 5 5 H 1.48504 * 109.47523 * 29.99686 * 3 2 1 6 6 H 1.48508 * 109.47388 * 149.99715 * 3 2 1 7 7 C 1.38808 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00305 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00086 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00182 * 179.97438 * 9 7 2 11 11 C 1.53114 * 109.52300 * 204.99635 * 10 9 7 12 12 C 1.53039 * 109.27879 * 182.37729 * 11 10 9 13 13 N 1.46848 * 109.52232 * 59.17821 * 12 11 10 14 14 C 1.46902 * 111.00039 * 174.16101 * 13 12 11 15 15 C 1.52997 * 109.47411 * 170.00529 * 14 13 12 16 16 N 1.46499 * 109.47555 * 180.02562 * 15 14 13 17 17 C 1.34777 * 120.00199 * 180.02562 * 16 15 14 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 15 20 20 H 1.08998 * 109.46963 * 14.72146 * 19 17 16 21 21 F 1.39905 * 109.46933 * 254.72213 * 19 17 16 22 22 C 1.52997 * 109.46870 * 134.72112 * 19 17 16 23 23 F 1.39899 * 109.47263 * 60.00014 * 22 19 17 24 24 F 1.39908 * 109.46797 * 179.97438 * 22 19 17 25 25 F 1.39895 * 109.47267 * 299.99862 * 22 19 17 26 26 C 1.46847 * 111.20065 * 298.26045 * 13 12 11 27 27 C 1.53029 * 109.52331 * 61.74170 * 26 13 12 28 28 H 0.96997 * 119.99925 * 0.02562 * 1 2 3 29 29 H 0.96996 * 119.99700 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.52230 * 325.13091 * 10 9 7 31 31 H 1.08999 * 109.50313 * 62.44463 * 11 10 9 32 32 H 1.09001 * 109.50762 * 302.31658 * 11 10 9 33 33 H 1.09006 * 109.46640 * 299.16745 * 12 11 10 34 34 H 1.09002 * 109.45977 * 179.19045 * 12 11 10 35 35 H 1.08998 * 109.47017 * 50.00098 * 14 13 12 36 36 H 1.09005 * 109.46806 * 290.00117 * 14 13 12 37 37 H 1.08998 * 109.47382 * 59.99793 * 15 14 13 38 38 H 1.09002 * 109.47216 * 300.00230 * 15 14 13 39 39 H 0.97000 * 119.99484 * 359.97438 * 16 15 14 40 40 H 1.09001 * 109.45735 * 181.75851 * 26 13 12 41 41 H 1.08995 * 109.45998 * 301.72488 * 26 13 12 42 42 H 1.09001 * 109.50846 * 180.87872 * 27 26 13 43 43 H 1.09000 * 109.50503 * 60.76211 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0022 11 6 5.5005 -2.2596 0.6124 12 6 6.2823 -3.5740 0.5567 13 7 6.4031 -4.0143 -0.8390 14 6 7.2653 -5.1990 -0.9445 15 6 7.1702 -5.7748 -2.3588 16 7 8.0295 -6.9566 -2.4639 17 6 8.1061 -7.6329 -3.6271 18 8 7.4632 -7.2634 -4.5868 19 6 8.9853 -8.8523 -3.7334 20 1 9.2670 -9.1852 -2.7344 21 9 10.1372 -8.5346 -4.4611 22 6 8.2229 -9.9701 -4.4475 23 9 7.8614 -9.5427 -5.7296 24 9 9.0394 -11.1019 -4.5467 25 9 7.0711 -10.2877 -3.7198 26 6 5.0839 -4.2691 -1.4316 27 6 4.2665 -2.9754 -1.4353 28 1 -0.4850 0.8400 -0.0004 29 1 3.8646 -0.3621 0.0007 30 1 3.5641 -3.2073 0.5898 31 1 5.3974 -1.9413 1.6498 32 1 6.0338 -1.4949 0.0477 33 1 5.7555 -4.3347 1.1331 34 1 7.2765 -3.4233 0.9774 35 1 6.9410 -5.9498 -0.2239 36 1 8.2974 -4.9170 -0.7358 37 1 7.4945 -5.0241 -3.0794 38 1 6.1381 -6.0568 -2.5676 39 1 8.5440 -7.2519 -1.6964 40 1 5.2079 -4.6233 -2.4550 41 1 4.5629 -5.0264 -0.8459 42 1 3.2817 -3.1683 -1.8609 43 1 4.7803 -2.2220 -2.0323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733580598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:12 Heat of formation + Delta-G solvation = -208.742370 kcal Electronic energy + Delta-G solvation = -29896.882323 eV Core-core repulsion = 24898.292265 eV Total energy + Delta-G solvation = -4998.590058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.87484 -49.04528 -48.26189 -48.08297 -40.37953 -39.07054 -36.19157 -34.79313 -32.57460 -31.78236 -30.72110 -30.26862 -28.15262 -25.21226 -24.20807 -23.31791 -22.12349 -21.60686 -21.11925 -19.63607 -19.52936 -19.34157 -19.00759 -17.94909 -17.56595 -17.26944 -16.53092 -15.95818 -15.67326 -15.33014 -15.12801 -15.04544 -14.94883 -14.70722 -14.64396 -14.55698 -14.38099 -14.33365 -14.29028 -14.05779 -13.50467 -13.44123 -13.22361 -13.16227 -12.54745 -12.23231 -12.10397 -11.88612 -11.75528 -11.55476 -10.97506 -10.91901 -10.74214 -10.64258 -10.35055 -10.17797 -9.81828 -9.75447 -9.58108 -8.89975 -8.39971 -7.26579 -5.77130 -3.12573 1.32822 1.66618 2.11470 2.80882 3.13925 3.21455 3.37832 3.41181 3.45357 3.45795 3.79242 3.92430 4.12975 4.38129 4.59264 4.66893 4.99341 5.04611 5.14242 5.27184 5.37800 5.45718 5.47825 5.53617 5.60243 5.67207 5.73187 5.90128 5.99434 6.12525 6.18358 6.34304 6.51908 6.55685 6.73620 6.93398 7.05989 7.10871 7.25354 7.99095 8.42180 9.20856 9.93607 10.13733 11.41234 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.025437 B = 0.001877 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.489308 B =14913.736477 C =15343.673018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.089 0.911 9 N -0.748 5.748 10 C 0.182 3.818 11 C -0.125 4.125 12 C 0.065 3.935 13 N -0.532 5.532 14 C 0.045 3.955 15 C 0.110 3.890 16 N -0.708 5.708 17 C 0.492 3.508 18 O -0.488 6.488 19 C 0.040 3.960 20 H 0.147 0.853 21 F -0.152 7.152 22 C 0.447 3.553 23 F -0.153 7.153 24 F -0.168 7.168 25 F -0.166 7.166 26 C 0.048 3.952 27 C -0.133 4.133 28 H 0.259 0.741 29 H 0.361 0.639 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.405 0.595 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.743 -21.477 -3.106 32.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.390 5.390 10 C 0.072 3.928 11 C -0.164 4.164 12 C -0.063 4.063 13 N -0.258 5.258 14 C -0.083 4.083 15 C -0.012 4.012 16 N -0.361 5.361 17 C 0.272 3.728 18 O -0.360 6.360 19 C -0.001 4.001 20 H 0.164 0.836 21 F -0.132 7.132 22 C 0.391 3.609 23 F -0.134 7.134 24 F -0.149 7.149 25 F -0.147 7.147 26 C -0.080 4.080 27 C -0.173 4.173 28 H 0.069 0.931 29 H 0.194 0.806 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.240 0.760 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 23.206 -20.864 -4.091 31.473 hybrid contribution 0.455 0.225 0.673 0.843 sum 23.661 -20.638 -3.418 31.582 Atomic orbital electron populations 1.69704 1.05116 1.25817 1.57600 1.24681 0.95245 0.97255 1.02084 0.86533 0.79153 0.84934 0.77797 1.21084 1.21824 1.20328 1.19069 0.80626 0.94636 1.42921 0.89310 1.42776 1.03969 1.02027 1.90260 1.20210 0.90216 0.89152 0.93185 1.21903 0.96695 0.96386 1.01379 1.22045 0.99899 0.97135 0.87269 1.62011 1.13747 1.31207 1.18805 1.22219 0.99236 0.92303 0.94587 1.21768 0.94935 0.86084 0.98459 1.45835 1.47466 1.29977 1.12776 1.19989 0.83548 0.84776 0.84451 1.90903 1.42404 1.66473 1.36241 1.22739 0.84902 0.94275 0.98176 0.83598 1.93040 1.47639 1.93511 1.79010 1.20276 0.78621 0.82831 0.79141 1.93329 1.91844 1.89306 1.38969 1.93265 1.72253 1.53258 1.96153 1.93266 1.50891 1.93385 1.77186 1.22333 0.88113 0.98532 0.99018 1.22282 0.99020 0.95297 1.00713 0.93084 0.80618 0.93186 0.91320 0.91370 0.94722 0.91068 0.94149 0.90042 0.89514 0.89919 0.75979 0.90705 0.94898 0.91117 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.30 13.97 55.49 0.78 -28.52 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 22.08 27.74 -169.99 -4.71 17.37 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 7 C -0.24 -6.76 10.42 -15.06 -0.16 -6.92 16 8 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 9 N -0.75 -17.39 4.93 -53.30 -0.26 -17.66 16 10 C 0.18 3.36 2.84 -67.81 -0.19 3.16 16 11 C -0.13 -1.84 5.57 -26.65 -0.15 -1.99 16 12 C 0.06 0.74 5.42 -3.83 -0.02 0.72 16 13 N -0.53 -5.97 4.81 -234.67 -1.13 -7.10 16 14 C 0.05 0.34 5.39 -3.82 -0.02 0.32 16 15 C 0.11 0.89 4.92 -4.04 -0.02 0.87 16 16 N -0.71 -4.13 5.56 -60.29 -0.33 -4.46 16 17 C 0.49 4.08 6.91 -10.98 -0.08 4.00 16 18 O -0.49 -6.28 15.60 5.55 0.09 -6.20 16 19 C 0.04 0.23 3.78 -27.88 -0.11 0.12 16 20 H 0.15 0.09 7.99 -51.93 -0.42 -0.33 16 21 F -0.15 -1.11 17.03 2.25 0.04 -1.08 16 22 C 0.45 3.44 2.86 37.16 0.11 3.55 16 23 F -0.15 -1.63 15.95 2.25 0.04 -1.60 16 24 F -0.17 -1.22 17.30 2.25 0.04 -1.18 16 25 F -0.17 -1.32 17.02 2.25 0.04 -1.28 16 26 C 0.05 0.62 4.85 -3.84 -0.02 0.60 16 27 C -0.13 -2.23 5.68 -26.65 -0.15 -2.38 16 28 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 29 H 0.36 8.30 5.66 -40.82 -0.23 8.07 16 30 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 35 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.79 6.21 -51.93 -0.32 0.46 16 39 H 0.41 0.84 8.36 -40.82 -0.34 0.50 16 40 H 0.07 0.90 5.81 -51.93 -0.30 0.60 16 41 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -34.37 364.59 -6.68 -41.05 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.85 Total: 3.11 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -0.90 Total: 2.06 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -0.95 Total: -57.74 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: 0.09 Total: -6.20 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.15 Total: -5.14 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.37 -6.68 -41.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733580598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.693 kcal (2) G-P(sol) polarization free energy of solvation -34.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds