Wall clock time and date at job start Sat Apr 11 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00018 * 2 1 4 4 H 1.48492 * 109.47427 * 270.00318 * 3 2 1 5 5 H 1.48509 * 109.46927 * 30.00053 * 3 2 1 6 6 H 1.48502 * 109.47154 * 149.99725 * 3 2 1 7 7 C 1.38816 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99844 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00117 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99777 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46981 * 180.02562 * 10 9 7 12 12 C 1.38235 * 119.99837 * 89.99789 * 11 10 9 13 13 C 1.38238 * 119.99500 * 179.97438 * 12 11 10 14 14 C 1.38233 * 120.00124 * 0.02739 * 13 12 11 15 15 C 1.50705 * 119.99788 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.46978 * 90.00344 * 15 14 13 17 17 C 1.34779 * 119.99900 * 180.02562 * 16 15 14 18 18 O 1.21602 * 119.99794 * 359.97438 * 17 16 15 19 19 C 1.47396 * 119.99472 * 180.02562 * 17 16 15 20 20 C 1.37353 * 128.56966 * 0.02562 * 19 17 16 21 21 O 1.33494 * 106.34239 * 179.97438 * 20 19 17 22 22 N 1.20658 * 113.15495 * 0.02562 * 21 20 19 23 23 C 1.30011 * 112.30477 * 359.97438 * 22 21 20 24 24 C 1.50691 * 127.33697 * 179.97438 * 23 22 21 25 25 C 1.53001 * 117.49938 * 8.74885 * 24 23 22 26 26 C 1.53005 * 117.50142 * 300.08813 * 24 23 22 27 27 C 1.38234 * 120.00188 * 0.25724 * 14 13 12 28 28 C 1.38234 * 119.99699 * 359.48518 * 27 14 13 29 29 H 0.96995 * 120.00452 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00000 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47177 * 60.00560 * 10 9 7 32 32 H 1.08993 * 109.47612 * 300.00338 * 10 9 7 33 33 H 1.07994 * 120.00059 * 0.02562 * 12 11 10 34 34 H 1.08000 * 119.99097 * 180.02562 * 13 12 11 35 35 H 1.09007 * 109.47205 * 330.00680 * 15 14 13 36 36 H 1.08993 * 109.46974 * 210.00352 * 15 14 13 37 37 H 0.96996 * 119.99639 * 359.97438 * 16 15 14 38 38 H 1.08004 * 126.82886 * 359.97438 * 20 19 17 39 39 H 1.09005 * 115.55388 * 154.41515 * 24 23 22 40 40 H 1.09004 * 117.50019 * 359.97438 * 25 24 23 41 41 H 1.08998 * 117.50132 * 145.01693 * 25 24 23 42 42 H 1.08999 * 117.49822 * 214.97717 * 26 24 23 43 43 H 1.09005 * 117.49656 * 359.97438 * 26 24 23 44 44 H 1.08001 * 119.99862 * 179.73181 * 27 14 13 45 45 H 1.08003 * 119.99504 * 180.25810 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0788 -4.8023 -0.0021 12 6 0.6292 -5.3268 -1.1994 13 6 -0.2686 -6.3779 -1.1997 14 6 -0.7173 -6.9040 -0.0027 15 6 -1.6966 -8.0495 -0.0031 16 7 -0.9640 -9.3182 -0.0042 17 6 -1.6379 -10.4854 -0.0052 18 8 -2.8539 -10.4854 -0.0048 19 6 -0.9007 -11.7618 -0.0057 20 6 0.4575 -11.9663 -0.0048 21 8 0.6382 -13.2890 -0.0052 22 7 -0.3967 -13.9092 -0.0067 23 6 -1.4383 -13.1312 -0.0070 24 6 -2.8875 -13.5441 -0.0093 25 6 -3.1997 -15.0279 0.1949 26 6 -3.3792 -14.3906 -1.1852 27 6 -0.2722 -6.3756 1.1946 28 6 0.6298 -5.3281 1.1949 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6854 -3.7149 0.8878 32 1 2.6842 -3.7141 -0.8921 33 1 0.9801 -4.9160 -2.1345 34 1 -0.6195 -6.7879 -2.1352 35 1 -2.3235 -7.9912 -0.8929 36 1 -2.3229 -7.9923 0.8871 37 1 0.0060 -9.3181 -0.0049 38 1 1.2264 -11.2079 -0.0039 39 1 -3.5833 -12.8204 0.4154 40 1 -2.3567 -15.7056 0.3305 41 1 -4.1009 -15.2804 0.7536 42 1 -4.3984 -14.2240 -1.5339 43 1 -2.6543 -14.6484 -1.9575 44 1 -0.6260 -6.7839 2.1298 45 1 0.9807 -4.9180 2.1304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753590228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:32 Heat of formation + Delta-G solvation = 66.027924 kcal Electronic energy + Delta-G solvation = -27232.157315 eV Core-core repulsion = 23218.108156 eV Total energy + Delta-G solvation = -4014.049159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 5.52 seconds Orbital eigenvalues (eV) -45.99970 -40.93520 -40.11241 -38.46252 -36.93503 -35.80634 -34.39641 -33.71988 -32.96506 -31.82751 -31.67241 -28.62473 -26.55283 -25.50796 -25.10402 -23.96528 -23.60203 -23.36732 -21.91888 -21.67394 -21.12061 -19.51017 -19.32243 -18.76406 -17.89645 -17.27087 -16.89800 -16.74268 -16.55237 -16.37178 -15.98057 -15.84487 -15.66764 -15.24168 -15.08570 -14.86268 -14.31553 -14.30421 -14.09014 -13.70027 -13.41673 -13.15704 -13.08194 -12.97486 -12.76631 -12.74202 -12.58596 -12.34956 -12.18759 -11.95380 -11.88729 -11.72597 -11.54374 -11.24748 -10.98032 -10.86003 -10.58034 -10.17633 -9.79477 -9.63658 -9.02746 -7.95659 -5.25791 0.04959 0.25103 0.53086 0.63271 1.48230 1.49872 1.58438 1.87832 2.09136 2.25900 2.55708 2.77958 2.85857 2.98231 3.18299 3.37790 3.64807 3.76492 3.85543 3.92147 3.96901 4.01344 4.04117 4.07367 4.16642 4.25670 4.31006 4.58535 4.58748 4.65544 4.66539 4.71965 4.75570 4.91196 4.91752 4.92331 5.08269 5.09480 5.13541 5.22351 5.26285 5.47874 5.48577 5.61735 5.84030 6.08396 6.25162 6.42770 7.07980 7.17639 7.31997 8.05453 8.29984 9.27528 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.032689 B = 0.001613 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.364725 B =17353.055876 C =17828.226866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.976 3.024 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.249 4.249 8 H 0.079 0.921 9 N -0.739 5.739 10 C 0.184 3.816 11 C -0.086 4.086 12 C -0.116 4.116 13 C -0.096 4.096 14 C -0.109 4.109 15 C 0.174 3.826 16 N -0.702 5.702 17 C 0.598 3.402 18 O -0.567 6.567 19 C -0.277 4.277 20 C 0.033 3.967 21 O 0.098 5.902 22 N -0.377 5.377 23 C 0.086 3.914 24 C -0.108 4.108 25 C -0.155 4.155 26 C -0.152 4.152 27 C -0.096 4.096 28 C -0.116 4.116 29 H 0.251 0.749 30 H 0.373 0.627 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.121 0.879 34 H 0.143 0.857 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.415 0.585 38 H 0.277 0.723 39 H 0.127 0.873 40 H 0.095 0.905 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.091 0.909 44 H 0.143 0.857 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.984 -30.242 -0.332 30.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.381 4.381 8 H 0.097 0.903 9 N -0.382 5.382 10 C 0.058 3.942 11 C -0.086 4.086 12 C -0.135 4.135 13 C -0.114 4.114 14 C -0.110 4.110 15 C 0.051 3.949 16 N -0.354 5.354 17 C 0.385 3.615 18 O -0.447 6.447 19 C -0.285 4.285 20 C -0.049 4.049 21 O 0.040 5.960 22 N -0.084 5.084 23 C -0.076 4.076 24 C -0.127 4.127 25 C -0.192 4.192 26 C -0.191 4.191 27 C -0.114 4.114 28 C -0.135 4.135 29 H 0.060 0.940 30 H 0.205 0.795 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.139 0.861 34 H 0.160 0.840 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.252 0.748 38 H 0.292 0.708 39 H 0.144 0.856 40 H 0.114 0.886 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.110 0.890 44 H 0.160 0.840 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.453 -31.440 -0.317 31.475 hybrid contribution 0.158 2.277 0.007 2.283 sum -1.295 -29.163 -0.311 29.193 Atomic orbital electron populations 1.69830 1.06710 1.26135 1.59262 1.25598 0.96385 1.01178 1.03475 0.85110 0.77720 0.79257 0.77469 1.21340 1.22256 1.19251 1.19679 0.91636 0.85162 1.41581 0.90338 1.42538 1.05547 1.00641 1.89466 1.19784 0.92533 0.83225 0.98617 1.20167 0.98133 0.96021 0.94322 1.21171 0.98073 0.96743 0.97478 1.21199 0.96128 0.95622 0.98454 1.19735 0.99536 0.98405 0.93299 1.20089 0.92206 0.79229 1.03394 1.45735 1.11068 1.04134 1.74459 1.16943 0.86242 0.82474 0.75847 1.90788 1.14664 1.87662 1.51562 1.22192 0.94375 0.94081 1.17833 1.27287 0.97239 0.86665 0.93708 1.84572 1.27477 1.17309 1.66630 1.73636 0.92671 1.20839 1.21288 1.24104 0.95839 0.88378 0.99296 1.20400 0.88656 0.96232 1.07403 1.23109 1.04159 0.92358 0.99592 1.23092 1.03314 1.01276 0.91370 1.21201 0.96097 0.95654 0.98453 1.21172 0.98033 0.96769 0.97483 0.93989 0.79510 0.95149 0.95159 0.86130 0.83963 0.90421 0.90406 0.74758 0.70799 0.85554 0.88602 0.86159 0.86367 0.89007 0.83958 0.86124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 2 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 3 Si 0.98 45.61 29.55 68.60 2.03 47.64 16 4 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.25 -13.80 9.99 84.03 0.84 -12.96 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.74 -37.42 5.59 -347.17 -1.94 -39.37 16 10 C 0.18 7.21 6.38 85.63 0.55 7.75 16 11 C -0.09 -2.72 5.25 -19.86 -0.10 -2.83 16 12 C -0.12 -3.20 9.70 22.27 0.22 -2.99 16 13 C -0.10 -2.04 9.70 22.27 0.22 -1.82 16 14 C -0.11 -2.10 5.25 -19.86 -0.10 -2.21 16 15 C 0.17 2.92 5.80 85.63 0.50 3.41 16 16 N -0.70 -9.55 5.54 -470.13 -2.61 -12.16 16 17 C 0.60 11.31 7.81 86.65 0.68 11.99 16 18 O -0.57 -15.17 15.80 -4.04 -0.06 -15.23 16 19 C -0.28 -4.45 6.47 -18.75 -0.12 -4.57 16 20 C 0.03 0.28 11.85 67.61 0.80 1.08 16 21 O 0.10 1.36 11.06 76.97 0.85 2.21 16 22 N -0.38 -7.12 11.71 -44.78 -0.52 -7.64 16 23 C 0.09 1.66 7.07 45.16 0.32 1.98 16 24 C -0.11 -1.98 5.90 -11.54 -0.07 -2.05 16 25 C -0.15 -2.18 10.17 30.62 0.31 -1.87 16 26 C -0.15 -2.23 10.24 30.62 0.31 -1.92 16 27 C -0.10 -2.04 9.70 22.27 0.22 -1.82 16 28 C -0.12 -3.20 9.70 22.27 0.22 -2.99 16 29 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 30 H 0.37 20.42 7.66 -92.71 -0.71 19.71 16 31 H 0.03 1.17 8.09 -2.39 -0.02 1.15 16 32 H 0.03 1.17 8.08 -2.39 -0.02 1.15 16 33 H 0.12 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 35 H 0.08 1.39 8.09 -2.38 -0.02 1.37 16 36 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 37 H 0.42 3.15 7.65 -92.71 -0.71 2.44 16 38 H 0.28 -0.87 7.68 -2.91 -0.02 -0.89 16 39 H 0.13 2.61 7.29 -2.38 -0.02 2.59 16 40 H 0.10 1.45 7.97 -2.38 -0.02 1.43 16 41 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 45 H 0.12 3.35 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -74.81 393.51 2.88 -71.93 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: -0.38 Total: 27.16 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 5.24 Total: -15.56 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -4.79 Total: -118.15 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.79 Total: -13.01 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -74.81 2.88 -71.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753590228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.955 kcal (2) G-P(sol) polarization free energy of solvation -74.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.52 seconds