Wall clock time and date at job start Sat Apr 11 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00074 * 2 1 4 4 H 1.48497 * 109.47330 * 269.99474 * 3 2 1 5 5 H 1.48502 * 109.47034 * 29.99640 * 3 2 1 6 6 H 1.48507 * 109.47117 * 149.99374 * 3 2 1 7 7 C 1.38817 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99900 * 0.02562 * 7 2 1 9 9 N 1.36934 * 119.99877 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99638 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47321 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47696 * 180.02562 * 11 10 9 13 13 C 1.46503 * 119.99648 * 278.60884 * 12 11 10 14 14 C 1.50697 * 109.47159 * 264.00474 * 13 12 11 15 15 C 1.38237 * 120.00085 * 264.31794 * 14 13 12 16 16 C 1.38233 * 120.00089 * 179.76598 * 15 14 13 17 17 C 1.38237 * 119.99982 * 0.47940 * 16 15 14 18 18 C 1.38237 * 119.99865 * 359.79687 * 17 16 15 19 19 C 1.38235 * 120.00103 * 84.58521 * 14 13 12 20 20 C 1.34776 * 120.00017 * 98.60419 * 12 11 10 21 21 O 1.21519 * 119.99585 * 186.30745 * 20 12 11 22 22 C 1.48155 * 120.00202 * 6.30247 * 20 12 11 23 23 C 1.39963 * 120.89157 * 330.56926 * 22 20 12 24 24 C 1.37982 * 119.13437 * 180.02562 * 23 22 20 25 25 N 1.31910 * 120.97738 * 359.71952 * 24 23 22 26 26 C 1.32174 * 121.96841 * 0.56741 * 25 24 23 27 27 O 1.35690 * 119.62327 * 179.70619 * 26 25 24 28 28 C 1.38891 * 120.75532 * 359.43662 * 26 25 24 29 29 H 0.97003 * 119.99713 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00315 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47348 * 59.99664 * 10 9 7 32 32 H 1.09000 * 109.47589 * 299.99370 * 10 9 7 33 33 H 1.09003 * 109.46843 * 59.99773 * 11 10 9 34 34 H 1.08996 * 109.47311 * 300.00220 * 11 10 9 35 35 H 1.09001 * 109.47374 * 24.00367 * 13 12 11 36 36 H 1.09005 * 109.46896 * 144.00419 * 13 12 11 37 37 H 1.07998 * 120.00129 * 359.97438 * 15 14 13 38 38 H 1.07999 * 120.00220 * 180.24938 * 16 15 14 39 39 H 1.08002 * 120.00471 * 179.76852 * 17 16 15 40 40 H 1.07997 * 119.99799 * 179.97438 * 18 17 16 41 41 H 1.08003 * 119.99596 * 0.02562 * 19 14 13 42 42 H 1.08002 * 120.43607 * 359.97438 * 23 22 20 43 43 H 1.08000 * 119.51308 * 179.97438 * 24 23 22 44 44 H 0.96693 * 114.00125 * 269.73062 * 27 26 25 45 45 H 1.07996 * 120.53139 * 180.29821 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1120 -2.4709 0.0011 11 6 5.6163 -2.1914 0.0011 12 7 6.3489 -3.4601 0.0005 13 6 6.5508 -4.1899 1.2546 14 6 7.9038 -3.8473 1.8230 15 6 8.9873 -4.6679 1.5708 16 6 10.2294 -4.3511 2.0881 17 6 10.3860 -3.2190 2.8658 18 6 9.3012 -2.4015 3.1228 19 6 8.0602 -2.7156 2.6011 20 6 6.8370 -3.9558 -1.1539 21 8 7.3432 -5.0603 -1.1747 22 6 6.7562 -3.1543 -2.3972 23 6 5.7204 -2.2334 -2.5925 24 6 5.6800 -1.5064 -3.7646 25 7 6.6029 -1.6645 -4.6937 26 6 7.5956 -2.5260 -4.5547 27 8 8.5158 -2.6543 -5.5436 28 6 7.7107 -3.2975 -3.4055 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3621 0.0007 31 1 3.8490 -3.0423 -0.8891 32 1 3.8485 -3.0426 0.8908 33 1 5.8796 -1.6198 0.8911 34 1 5.8797 -1.6198 -0.8888 35 1 5.7755 -3.9088 1.9674 36 1 6.4976 -5.2618 1.0638 37 1 8.8641 -5.5546 0.9667 38 1 11.0768 -4.9899 1.8877 39 1 11.3556 -2.9734 3.2732 40 1 9.4234 -1.5174 3.7308 41 1 7.2126 -2.0771 2.8020 42 1 4.9622 -2.0942 -1.8361 43 1 4.8833 -0.7944 -3.9218 44 1 8.2917 -3.3230 -6.2050 45 1 8.5259 -3.9969 -3.2937 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754838133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:48 Heat of formation + Delta-G solvation = 42.125107 kcal Electronic energy + Delta-G solvation = -29394.934613 eV Core-core repulsion = 25379.848950 eV Total energy + Delta-G solvation = -4015.085663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.21023 -39.89920 -38.92536 -37.24818 -36.67252 -34.66910 -33.23326 -32.00846 -31.28470 -31.02408 -30.41579 -28.45846 -26.88626 -24.48945 -23.75602 -23.44471 -22.64732 -21.73268 -21.63087 -20.14747 -18.74523 -17.77479 -17.49205 -17.00335 -16.77725 -16.62104 -15.82291 -15.67905 -15.55180 -15.06419 -14.88994 -14.55481 -14.44068 -13.98483 -13.89504 -13.55065 -13.48566 -13.36123 -13.04902 -12.82301 -12.65013 -12.12501 -12.07099 -11.95644 -11.83080 -11.49447 -11.28692 -11.18345 -11.05943 -10.95244 -10.41854 -10.30968 -10.01270 -9.73363 -9.51182 -9.13281 -9.04942 -9.02075 -8.93483 -8.80920 -7.44432 -5.89612 -3.29062 0.57285 0.81876 1.11688 1.27680 2.57580 2.77256 3.26915 3.29108 3.34227 3.37402 3.64174 3.71780 4.11036 4.46435 4.56248 4.63850 4.68683 4.78153 4.83705 4.86435 4.93945 4.98846 5.06044 5.21154 5.25778 5.34252 5.39073 5.42793 5.51073 5.51829 5.57179 5.57561 5.65579 5.84173 5.84620 5.92463 6.10473 6.27257 6.31421 6.36733 6.38029 6.45235 6.47377 6.85606 7.14653 7.25513 7.71902 7.82147 7.91171 8.27221 9.03805 9.75403 9.92101 11.28012 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007305 B = 0.004392 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3831.871422 B = 6374.183392 C = 9061.835779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.012 3.988 3 Si 0.881 3.119 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.252 4.252 8 H 0.092 0.908 9 N -0.752 5.752 10 C 0.135 3.865 11 C 0.060 3.940 12 N -0.589 5.589 13 C 0.154 3.846 14 C -0.106 4.106 15 C -0.095 4.095 16 C -0.126 4.126 17 C -0.118 4.118 18 C -0.125 4.125 19 C -0.103 4.103 20 C 0.565 3.435 21 O -0.529 6.529 22 C -0.072 4.072 23 C -0.175 4.175 24 C 0.126 3.874 25 N -0.489 5.489 26 C 0.301 3.699 27 O -0.481 6.481 28 C -0.133 4.133 29 H 0.262 0.738 30 H 0.362 0.638 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.185 0.815 43 H 0.173 0.827 44 H 0.400 0.600 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.667 -7.386 -0.140 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.185 4.185 3 Si 0.711 3.289 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.007 3.993 11 C -0.063 4.063 12 N -0.320 5.320 13 C 0.032 3.968 14 C -0.108 4.108 15 C -0.113 4.113 16 C -0.144 4.144 17 C -0.137 4.137 18 C -0.143 4.143 19 C -0.121 4.121 20 C 0.353 3.647 21 O -0.405 6.405 22 C -0.083 4.083 23 C -0.195 4.195 24 C -0.031 4.031 25 N -0.208 5.208 26 C 0.122 3.878 27 O -0.288 6.288 28 C -0.155 4.155 29 H 0.072 0.928 30 H 0.195 0.805 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.202 0.798 43 H 0.190 0.810 44 H 0.258 0.742 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 19.976 -7.174 -0.609 21.234 hybrid contribution 0.381 0.568 0.519 0.858 sum 20.357 -6.606 -0.090 21.402 Atomic orbital electron populations 1.69692 1.05159 1.26068 1.56588 1.24668 0.95187 0.97202 1.01454 0.86614 0.79232 0.85015 0.78017 1.20721 1.21586 1.20290 1.18976 0.80069 0.94871 1.44266 0.89056 1.42583 1.04271 1.01569 1.91520 1.21050 0.87971 0.90310 0.99973 1.22819 0.93144 0.85129 1.05203 1.47692 1.54145 1.23605 1.06552 1.20441 0.93695 0.98010 0.84657 1.20223 0.96077 0.95912 0.98555 1.21214 0.92222 0.99623 0.98290 1.21162 0.97376 0.97530 0.98359 1.21175 0.98708 0.95152 0.98626 1.21141 0.92954 0.99785 1.00422 1.21133 0.97688 0.96340 0.96981 1.18153 0.77993 0.85618 0.82899 1.90745 1.44832 1.19389 1.85574 1.20194 0.96196 0.96960 0.94970 1.23685 1.00126 0.95347 1.00308 1.22710 0.95054 0.97442 0.87876 1.67061 1.02305 1.18092 1.33345 1.19001 0.88092 0.91966 0.88736 1.84790 1.42114 1.63361 1.38486 1.22112 1.00119 0.99742 0.93528 0.92828 0.80486 0.94587 0.94286 0.89874 0.87535 0.88516 0.88808 0.85488 0.86193 0.86296 0.86089 0.85875 0.79817 0.81024 0.74213 0.83449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.65 13.97 55.49 0.78 -26.87 16 2 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 3 Si 0.88 20.35 27.74 -169.99 -4.71 15.63 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -5.89 6.52 56.52 0.37 -5.52 16 7 C -0.25 -6.53 10.47 -15.06 -0.16 -6.69 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 9 N -0.75 -15.50 5.39 -59.91 -0.32 -15.83 16 10 C 0.13 2.21 5.48 -4.04 -0.02 2.19 16 11 C 0.06 0.78 4.96 -4.04 -0.02 0.76 16 12 N -0.59 -7.53 2.48 -176.05 -0.44 -7.97 16 13 C 0.15 1.77 5.54 -5.19 -0.03 1.74 16 14 C -0.11 -1.22 5.41 -104.62 -0.57 -1.79 16 15 C -0.09 -1.08 9.68 -39.58 -0.38 -1.47 16 16 C -0.13 -1.28 10.05 -39.58 -0.40 -1.68 16 17 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 18 C -0.13 -1.25 10.05 -39.58 -0.40 -1.64 16 19 C -0.10 -1.11 9.72 -39.58 -0.38 -1.50 16 20 C 0.57 8.02 7.45 -12.19 -0.09 7.93 16 21 O -0.53 -8.39 16.23 5.35 0.09 -8.30 16 22 C -0.07 -0.98 5.61 -104.68 -0.59 -1.57 16 23 C -0.18 -2.34 7.60 -39.03 -0.30 -2.64 16 24 C 0.13 1.66 11.17 -17.61 -0.20 1.47 16 25 N -0.49 -6.86 10.36 -13.38 -0.14 -7.00 16 26 C 0.30 3.87 7.74 -17.16 -0.13 3.74 16 27 O -0.48 -5.19 13.56 -18.77 -0.25 -5.45 16 28 C -0.13 -1.69 9.63 -38.84 -0.37 -2.06 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.36 7.18 5.53 -40.82 -0.23 6.95 16 31 H 0.04 0.62 7.11 -51.93 -0.37 0.25 16 32 H 0.04 0.66 8.03 -51.93 -0.42 0.24 16 33 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 34 H 0.11 1.38 4.00 -51.95 -0.21 1.17 16 35 H 0.10 1.00 7.90 -51.93 -0.41 0.59 16 36 H 0.09 1.09 7.43 -51.93 -0.39 0.71 16 37 H 0.13 1.47 7.86 -52.49 -0.41 1.06 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.12 1.22 7.96 -52.48 -0.42 0.80 16 42 H 0.19 2.57 2.72 -52.49 -0.14 2.43 16 43 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 44 H 0.40 2.25 9.06 45.56 0.41 2.66 16 45 H 0.15 1.72 7.98 -52.49 -0.42 1.30 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -32.92 378.76 -8.52 -41.45 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -4.69 Total: 13.15 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -4.53 Total: -4.52 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.12 Total: -57.66 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.17 Total: -13.75 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.71 Total: 15.63 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.92 -8.52 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754838133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.571 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds