Wall clock time and date at job start Sat Apr 11 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00074 * 2 1 4 4 H 1.48497 * 109.47330 * 269.99474 * 3 2 1 5 5 H 1.48502 * 109.47034 * 29.99640 * 3 2 1 6 6 H 1.48507 * 109.47117 * 149.99374 * 3 2 1 7 7 C 1.38817 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99900 * 0.02562 * 7 2 1 9 9 N 1.36934 * 119.99877 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99638 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47321 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47696 * 180.02562 * 11 10 9 13 13 C 1.46503 * 119.99648 * 278.60884 * 12 11 10 14 14 C 1.50697 * 109.47159 * 264.00474 * 13 12 11 15 15 C 1.38237 * 120.00085 * 264.31794 * 14 13 12 16 16 C 1.38233 * 120.00089 * 179.76598 * 15 14 13 17 17 C 1.38237 * 119.99982 * 0.47940 * 16 15 14 18 18 C 1.38237 * 119.99865 * 359.79687 * 17 16 15 19 19 C 1.38235 * 120.00103 * 84.58521 * 14 13 12 20 20 C 1.34776 * 120.00017 * 98.60419 * 12 11 10 21 21 O 1.21519 * 119.99585 * 186.30745 * 20 12 11 22 22 C 1.48155 * 120.00202 * 6.30247 * 20 12 11 23 23 C 1.39963 * 120.89157 * 330.56926 * 22 20 12 24 24 C 1.37982 * 119.13437 * 180.02562 * 23 22 20 25 25 N 1.31910 * 120.97738 * 359.71952 * 24 23 22 26 26 C 1.32174 * 121.96841 * 0.56741 * 25 24 23 27 27 O 1.35690 * 119.62327 * 179.70619 * 26 25 24 28 28 C 1.38891 * 120.75532 * 359.43662 * 26 25 24 29 29 H 0.97003 * 119.99713 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00315 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47348 * 59.99664 * 10 9 7 32 32 H 1.09000 * 109.47589 * 299.99370 * 10 9 7 33 33 H 1.09003 * 109.46843 * 59.99773 * 11 10 9 34 34 H 1.08996 * 109.47311 * 300.00220 * 11 10 9 35 35 H 1.09001 * 109.47374 * 24.00367 * 13 12 11 36 36 H 1.09005 * 109.46896 * 144.00419 * 13 12 11 37 37 H 1.07998 * 120.00129 * 359.97438 * 15 14 13 38 38 H 1.07999 * 120.00220 * 180.24938 * 16 15 14 39 39 H 1.08002 * 120.00471 * 179.76852 * 17 16 15 40 40 H 1.07997 * 119.99799 * 179.97438 * 18 17 16 41 41 H 1.08003 * 119.99596 * 0.02562 * 19 14 13 42 42 H 1.08002 * 120.43607 * 359.97438 * 23 22 20 43 43 H 1.08000 * 119.51308 * 179.97438 * 24 23 22 44 44 H 0.96693 * 114.00125 * 269.73062 * 27 26 25 45 45 H 1.07996 * 120.53139 * 180.29821 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1120 -2.4709 0.0011 11 6 5.6163 -2.1914 0.0011 12 7 6.3489 -3.4601 0.0005 13 6 6.5508 -4.1899 1.2546 14 6 7.9038 -3.8473 1.8230 15 6 8.9873 -4.6679 1.5708 16 6 10.2294 -4.3511 2.0881 17 6 10.3860 -3.2190 2.8658 18 6 9.3012 -2.4015 3.1228 19 6 8.0602 -2.7156 2.6011 20 6 6.8370 -3.9558 -1.1539 21 8 7.3432 -5.0603 -1.1747 22 6 6.7562 -3.1543 -2.3972 23 6 5.7204 -2.2334 -2.5925 24 6 5.6800 -1.5064 -3.7646 25 7 6.6029 -1.6645 -4.6937 26 6 7.5956 -2.5260 -4.5547 27 8 8.5158 -2.6543 -5.5436 28 6 7.7107 -3.2975 -3.4055 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3621 0.0007 31 1 3.8490 -3.0423 -0.8891 32 1 3.8485 -3.0426 0.8908 33 1 5.8796 -1.6198 0.8911 34 1 5.8797 -1.6198 -0.8888 35 1 5.7755 -3.9088 1.9674 36 1 6.4976 -5.2618 1.0638 37 1 8.8641 -5.5546 0.9667 38 1 11.0768 -4.9899 1.8877 39 1 11.3556 -2.9734 3.2732 40 1 9.4234 -1.5174 3.7308 41 1 7.2126 -2.0771 2.8020 42 1 4.9622 -2.0942 -1.8361 43 1 4.8833 -0.7944 -3.9218 44 1 8.2917 -3.3230 -6.2050 45 1 8.5259 -3.9969 -3.2937 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754838133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:47 Heat of formation + Delta-G solvation = 18.572628 kcal Electronic energy + Delta-G solvation = -29395.955925 eV Core-core repulsion = 25379.848950 eV Total energy + Delta-G solvation = -4016.106975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.24816 -40.85113 -39.78799 -38.28093 -37.81664 -36.16403 -34.31814 -33.55060 -32.52443 -31.79213 -31.41235 -29.87438 -27.83322 -25.82853 -24.95174 -24.53415 -23.52997 -23.14795 -22.55682 -21.14357 -19.99163 -19.35289 -18.51864 -17.98128 -17.76467 -17.62863 -16.84378 -16.75221 -16.53147 -16.29353 -15.91467 -15.81298 -15.48983 -15.45429 -15.09920 -14.76111 -14.49793 -14.31718 -14.25647 -13.98119 -13.58014 -13.35745 -13.21917 -13.11632 -12.94837 -12.86576 -12.69216 -12.30634 -12.15220 -12.02028 -11.86394 -11.78000 -11.52999 -11.08425 -10.94262 -10.52464 -10.06213 -9.92755 -9.82795 -9.71652 -9.32067 -7.98281 -5.34913 -0.46550 -0.16447 0.31766 0.49415 1.44826 1.48713 1.51505 1.55684 1.74266 2.41139 2.53517 2.65737 2.90749 3.03344 3.33953 3.59424 3.71008 3.75772 3.81839 3.83283 3.88785 3.95023 4.07207 4.14979 4.20852 4.28029 4.32389 4.46045 4.53747 4.56670 4.63555 4.69296 4.75232 4.81965 4.86510 5.06449 5.08881 5.15539 5.26950 5.36994 5.55539 5.60771 5.65344 5.79029 6.08346 6.09731 6.23114 6.50942 6.76500 6.82253 7.10406 7.81012 8.02022 9.22702 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007305 B = 0.004392 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3831.871422 B = 6374.183392 C = 9061.835779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.057 4.057 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.303 1.303 6 H -0.243 1.243 7 C -0.235 4.235 8 H 0.055 0.945 9 N -0.749 5.749 10 C 0.138 3.862 11 C 0.072 3.928 12 N -0.583 5.583 13 C 0.152 3.848 14 C -0.116 4.116 15 C -0.111 4.111 16 C -0.133 4.133 17 C -0.120 4.120 18 C -0.130 4.130 19 C -0.112 4.112 20 C 0.563 3.437 21 O -0.550 6.550 22 C -0.078 4.078 23 C -0.177 4.177 24 C 0.123 3.877 25 N -0.506 5.506 26 C 0.306 3.694 27 O -0.485 6.485 28 C -0.133 4.133 29 H 0.258 0.742 30 H 0.371 0.629 31 H 0.031 0.969 32 H 0.037 0.963 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.136 0.864 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.132 0.868 42 H 0.179 0.821 43 H 0.185 0.815 44 H 0.423 0.577 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.420 -6.329 0.154 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.249 4.249 3 Si 0.776 3.224 4 H -0.198 1.198 5 H -0.230 1.230 6 H -0.167 1.167 7 C -0.365 4.365 8 H 0.074 0.926 9 N -0.396 5.396 10 C 0.011 3.989 11 C -0.051 4.051 12 N -0.313 5.313 13 C 0.031 3.969 14 C -0.118 4.118 15 C -0.130 4.130 16 C -0.151 4.151 17 C -0.138 4.138 18 C -0.148 4.148 19 C -0.131 4.131 20 C 0.351 3.649 21 O -0.428 6.428 22 C -0.089 4.089 23 C -0.196 4.196 24 C -0.033 4.033 25 N -0.226 5.226 26 C 0.127 3.873 27 O -0.295 6.295 28 C -0.155 4.155 29 H 0.066 0.934 30 H 0.205 0.795 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.119 0.881 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.154 0.846 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.195 0.805 43 H 0.202 0.798 44 H 0.284 0.716 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 22.789 -6.158 -0.319 23.609 hybrid contribution -0.434 0.078 0.394 0.591 sum 22.355 -6.081 0.074 23.167 Atomic orbital electron populations 1.69887 1.07414 1.26768 1.59244 1.25480 0.95939 1.01271 1.02174 0.85509 0.78973 0.79433 0.78508 1.19848 1.23045 1.16660 1.18902 0.82315 0.93386 1.41940 0.92648 1.42435 1.02485 1.03512 1.91213 1.21102 0.89925 0.88419 0.99478 1.22638 0.90589 0.85369 1.06479 1.47690 1.53422 1.23467 1.06722 1.20529 0.94529 0.97573 0.84267 1.20203 0.95748 0.96537 0.99272 1.21262 0.93079 0.99676 0.98965 1.21418 0.97380 0.98112 0.98154 1.21504 0.99798 0.94569 0.97971 1.21453 0.92653 1.00440 1.00212 1.21300 0.98539 0.96226 0.97019 1.18312 0.77773 0.85413 0.83376 1.90734 1.45921 1.20263 1.85900 1.20224 0.96650 0.97056 0.94975 1.23550 0.99965 0.95725 1.00402 1.22926 0.95222 0.97502 0.87611 1.67118 1.02923 1.18820 1.33741 1.19091 0.87753 0.91339 0.89147 1.84739 1.41660 1.64406 1.38742 1.22196 1.00181 0.99850 0.93264 0.93351 0.79519 0.95111 0.94455 0.88122 0.86806 0.87396 0.89467 0.86498 0.84577 0.83911 0.84107 0.85038 0.80467 0.79784 0.71584 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.04 13.97 21.65 0.30 -59.74 16 2 C -0.06 -3.10 5.50 84.86 0.47 -2.64 16 3 Si 0.95 41.17 27.74 68.60 1.90 43.07 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.24 -9.04 6.52 99.48 0.65 -8.40 16 7 C -0.23 -12.18 10.47 84.04 0.88 -11.30 16 8 H 0.06 3.23 8.06 -2.91 -0.02 3.20 16 9 N -0.75 -29.71 5.39 -343.45 -1.85 -31.56 16 10 C 0.14 4.35 5.48 86.38 0.47 4.82 16 11 C 0.07 1.73 4.96 86.38 0.43 2.16 16 12 N -0.58 -14.19 2.48 -829.20 -2.06 -16.25 16 13 C 0.15 3.37 5.54 85.63 0.47 3.84 16 14 C -0.12 -2.53 5.41 -19.87 -0.11 -2.64 16 15 C -0.11 -2.46 9.68 22.27 0.22 -2.24 16 16 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 17 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 18 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 19 C -0.11 -2.19 9.72 22.27 0.22 -1.98 16 20 C 0.56 15.51 7.45 86.88 0.65 16.15 16 21 O -0.55 -17.28 16.23 -3.77 -0.06 -17.34 16 22 C -0.08 -2.02 5.61 -19.90 -0.11 -2.14 16 23 C -0.18 -4.48 7.60 22.63 0.17 -4.31 16 24 C 0.12 3.08 11.17 84.62 0.94 4.03 16 25 N -0.51 -13.40 10.36 -309.13 -3.20 -16.60 16 26 C 0.31 7.35 7.74 84.80 0.66 8.01 16 27 O -0.49 -9.49 13.56 -90.09 -1.22 -10.71 16 28 C -0.13 -3.19 9.63 22.75 0.22 -2.98 16 29 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.37 13.59 5.53 -92.71 -0.51 13.07 16 31 H 0.03 1.03 7.11 -2.39 -0.02 1.02 16 32 H 0.04 1.22 8.03 -2.39 -0.02 1.20 16 33 H 0.10 2.14 8.04 -2.39 -0.02 2.12 16 34 H 0.11 2.68 4.00 -2.40 -0.01 2.67 16 35 H 0.11 2.10 7.90 -2.39 -0.02 2.08 16 36 H 0.09 2.03 7.43 -2.38 -0.02 2.02 16 37 H 0.12 2.74 7.86 -2.91 -0.02 2.72 16 38 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.13 2.26 7.96 -2.91 -0.02 2.24 16 42 H 0.18 4.72 2.72 -2.91 -0.01 4.71 16 43 H 0.19 3.99 8.06 -2.91 -0.02 3.96 16 44 H 0.42 3.84 9.06 -74.06 -0.67 3.17 16 45 H 0.16 3.43 7.98 -2.91 -0.02 3.41 16 Total: -1.00 -71.23 378.76 -0.13 -71.37 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: -0.19 Total: 35.03 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 6.25 Total: 2.74 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -6.81 Total: -124.16 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -1.28 Total: -28.06 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.90 Total: 43.07 kcal Total: -71.23 -0.13 -71.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754838133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.938 kcal (2) G-P(sol) polarization free energy of solvation -71.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds