Wall clock time and date at job start Sat Apr 11 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86795 * 119.99766 * 2 1 4 4 H 1.48506 * 109.47231 * 269.99907 * 3 2 1 5 5 H 1.48496 * 109.47350 * 29.99826 * 3 2 1 6 6 H 1.48503 * 109.47160 * 149.99958 * 3 2 1 7 7 C 1.38652 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00315 * 179.97438 * 7 2 1 9 9 O 1.34840 * 119.99729 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99746 * 185.06047 * 9 7 2 11 11 C 1.38901 * 120.06776 * 354.48601 * 10 9 7 12 12 C 1.38082 * 119.93078 * 179.97438 * 11 10 9 13 13 C 1.38325 * 120.06584 * 359.74947 * 12 11 10 14 14 C 1.38284 * 120.13935 * 0.50988 * 13 12 11 15 15 C 1.50695 * 119.96776 * 179.76626 * 14 13 12 16 16 N 1.46494 * 109.47202 * 269.72370 * 15 14 13 17 17 C 1.34781 * 120.00112 * 179.97438 * 16 15 14 18 18 O 1.21566 * 119.99981 * 359.97438 * 17 16 15 19 19 C 1.47715 * 119.99971 * 180.02562 * 17 16 15 20 20 C 1.41639 * 126.49806 * 180.02562 * 19 17 16 21 21 C 1.34699 * 105.33965 * 179.72029 * 20 19 17 22 22 N 1.35513 * 107.70785 * 0.28320 * 21 20 19 23 23 N 1.28420 * 109.71885 * 359.93702 * 22 21 20 24 24 C 1.46992 * 123.89837 * 179.97438 * 22 21 20 25 25 C 1.53151 * 108.88715 * 342.33329 * 24 22 21 26 26 C 1.53148 * 109.60257 * 51.12446 * 25 24 22 27 27 C 1.50798 * 127.53882 * 180.29962 * 21 20 19 28 28 C 1.38120 * 120.06814 * 359.48811 * 14 13 12 29 29 H 0.96994 * 119.99901 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.03967 * 0.02562 * 11 10 9 31 31 H 1.07995 * 119.96940 * 180.02562 * 12 11 10 32 32 H 1.07995 * 119.93447 * 180.27228 * 13 12 11 33 33 H 1.08996 * 109.47398 * 149.72154 * 15 14 13 34 34 H 1.09008 * 109.47068 * 29.72480 * 15 14 13 35 35 H 0.96997 * 120.00025 * 0.02562 * 16 15 14 36 36 H 1.08002 * 127.32970 * 359.97438 * 20 19 17 37 37 H 1.08999 * 109.56569 * 222.51581 * 24 22 21 38 38 H 1.08996 * 109.67246 * 102.21129 * 24 22 21 39 39 H 1.09002 * 109.44834 * 291.08452 * 25 24 22 40 40 H 1.08998 * 109.44892 * 171.16493 * 25 24 22 41 41 H 1.08998 * 109.54440 * 170.53861 * 26 25 24 42 42 H 1.08999 * 109.53739 * 50.27943 * 26 25 24 43 43 H 1.09003 * 109.71589 * 284.13548 * 27 21 20 44 44 H 1.08990 * 109.71584 * 44.78108 * 27 21 20 45 45 H 1.08000 * 120.03548 * 180.23354 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3347 -2.3685 0.0016 10 6 2.0701 -3.5045 0.1088 11 6 3.4575 -3.4393 0.0957 12 6 4.2027 -4.5966 0.2055 13 6 3.5689 -5.8194 0.3335 14 6 2.1878 -5.8882 0.3414 15 6 1.5014 -7.2230 0.4758 16 7 1.2720 -7.7903 -0.8552 17 6 0.6676 -8.9883 -0.9822 18 8 0.3133 -9.5983 0.0079 19 6 0.4368 -9.5606 -2.3243 20 6 -0.1821 -10.8007 -2.6163 21 6 -0.1759 -10.8943 -3.9600 22 7 0.4182 -9.7785 -4.4482 23 7 0.7704 -9.0151 -3.4775 24 6 0.6132 -9.5136 -5.8808 25 6 0.4635 -10.8277 -6.6529 26 6 -0.8446 -11.5145 -6.2496 27 6 -0.7206 -12.0181 -4.8052 28 6 1.4368 -4.7341 0.2320 29 1 -0.4850 0.8400 -0.0004 30 1 3.9530 -2.4844 0.0007 31 1 5.2815 -4.5465 0.1958 32 1 4.1539 -6.7227 0.4236 33 1 0.5462 -7.0908 0.9839 34 1 2.1308 -7.8985 1.0552 35 1 1.5557 -7.3041 -1.6452 36 1 -0.5787 -11.5167 -1.9117 37 1 1.6108 -9.1059 -6.0442 38 1 -0.1342 -8.7997 -6.2270 39 1 1.3036 -11.4825 -6.4213 40 1 0.4497 -10.6205 -7.7229 41 1 -1.0340 -12.3573 -6.9143 42 1 -1.6667 -10.8021 -6.3187 43 1 -0.0404 -12.8691 -4.7682 44 1 -1.7018 -12.3146 -4.4347 45 1 0.3582 -4.7881 0.2421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771722616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:59 Heat of formation + Delta-G solvation = 31.177726 kcal Electronic energy + Delta-G solvation = -27823.610211 eV Core-core repulsion = 23808.049834 eV Total energy + Delta-G solvation = -4015.560377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.96616 -39.50677 -38.86360 -37.01581 -36.71048 -34.43118 -33.36905 -32.31031 -31.22734 -30.22354 -29.08528 -28.96290 -26.30890 -25.28573 -24.57589 -23.22931 -22.31320 -21.66230 -20.76113 -20.49940 -19.33369 -17.84120 -17.26615 -17.04178 -16.76116 -16.31161 -15.70389 -15.32361 -15.02322 -14.88649 -14.61620 -14.52554 -14.41764 -14.22820 -13.97695 -13.71945 -13.57463 -13.41437 -13.01162 -12.69096 -12.39096 -12.36495 -12.06057 -11.71006 -11.64680 -11.61442 -11.52159 -11.35539 -10.92503 -10.88371 -10.78162 -10.66723 -10.46176 -10.07850 -9.37767 -9.25991 -9.10079 -8.87229 -8.84510 -8.20281 -7.29043 -6.46513 -4.05975 1.52681 1.93784 1.97911 2.19415 2.31396 3.11007 3.12575 3.17419 3.44348 3.50091 3.86260 3.94688 4.08591 4.15766 4.27822 4.51938 4.60223 4.70917 4.83200 4.94055 4.98543 5.09420 5.10144 5.15640 5.21851 5.29858 5.33216 5.42407 5.51447 5.58891 5.59385 5.75526 5.79367 5.89038 5.97293 6.11597 6.26867 6.30072 6.54253 6.58189 6.60310 6.85966 7.02783 7.23293 7.30779 7.38870 7.58105 7.75214 7.88046 7.97764 8.33050 8.98809 9.68188 10.71364 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014388 B = 0.002091 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.538486 B =13387.060247 C =14335.507973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.077 4.077 13 C -0.193 4.193 14 C -0.072 4.072 15 C 0.167 3.833 16 N -0.707 5.707 17 C 0.603 3.397 18 O -0.539 6.539 19 C -0.014 4.014 20 C -0.176 4.176 21 C 0.009 3.991 22 N -0.281 5.281 23 N -0.256 5.256 24 C 0.120 3.880 25 C -0.136 4.136 26 C -0.128 4.128 27 C -0.051 4.051 28 C -0.170 4.170 29 H 0.270 0.730 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.409 0.591 36 H 0.162 0.838 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 -22.232 -13.597 26.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.080 6.080 10 C 0.097 3.903 11 C -0.245 4.245 12 C -0.095 4.095 13 C -0.213 4.213 14 C -0.073 4.073 15 C 0.045 3.955 16 N -0.358 5.358 17 C 0.387 3.613 18 O -0.415 6.415 19 C -0.174 4.174 20 C -0.204 4.204 21 C -0.114 4.114 22 N -0.071 5.071 23 N -0.091 5.091 24 C 0.000 4.000 25 C -0.174 4.174 26 C -0.166 4.166 27 C -0.090 4.090 28 C -0.190 4.190 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.245 0.755 36 H 0.179 0.821 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.252 -21.438 -13.469 25.349 hybrid contribution 0.368 0.590 -0.084 0.700 sum 1.620 -20.848 -13.553 24.919 Atomic orbital electron populations 1.70041 1.05959 1.27705 1.45934 1.25296 0.95848 0.98848 0.96535 0.85710 0.78929 0.80076 0.78698 1.19889 1.20236 1.19182 1.21322 0.91785 0.80792 1.52972 0.89056 1.83988 1.34236 1.11391 1.78404 1.19320 0.90261 0.88062 0.92696 1.21236 0.93829 0.99068 1.10324 1.20740 0.98546 0.92262 0.97959 1.20488 0.93342 0.97156 1.10293 1.19256 0.93507 0.92807 1.01720 1.20201 1.00258 0.91421 0.83629 1.45985 1.59803 1.19791 1.10218 1.16882 0.77632 0.80851 0.85922 1.90776 1.52066 1.61019 1.37641 1.21954 1.06992 0.96489 0.91968 1.21293 1.06623 0.98691 0.93756 1.21268 1.03789 0.92422 0.93941 1.45713 1.41309 1.13373 1.06672 1.73454 1.19850 1.20691 0.95105 1.22155 1.04693 0.99342 0.73819 1.21939 0.99398 0.95381 1.00697 1.21705 0.97436 1.01287 0.96133 1.20344 1.01829 0.93940 0.92849 1.20095 0.99480 0.89841 1.09555 0.91989 0.85479 0.87292 0.87465 0.90598 0.90702 0.75531 0.82082 0.88039 0.88777 0.90382 0.88670 0.90051 0.90967 0.89512 0.89038 0.86352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.28 13.67 55.48 0.76 -24.52 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.39 -10.91 9.49 30.89 0.29 -10.62 16 8 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 9 O -0.18 -5.03 9.76 0.02 0.00 -5.02 16 10 C 0.15 3.60 6.65 -39.11 -0.26 3.34 16 11 C -0.23 -4.83 9.17 -39.39 -0.36 -5.19 16 12 C -0.08 -1.39 10.04 -39.61 -0.40 -1.79 16 13 C -0.19 -3.32 9.70 -39.53 -0.38 -3.70 16 14 C -0.07 -1.29 5.25 -104.65 -0.55 -1.84 16 15 C 0.17 2.66 5.80 -5.20 -0.03 2.63 16 16 N -0.71 -10.99 5.55 -62.48 -0.35 -11.34 16 17 C 0.60 9.84 7.83 -12.39 -0.10 9.74 16 18 O -0.54 -10.05 16.93 5.31 0.09 -9.96 16 19 C -0.01 -0.20 7.13 -82.68 -0.59 -0.79 16 20 C -0.18 -2.16 10.75 -39.54 -0.43 -2.59 16 21 C 0.01 0.09 6.57 -82.17 -0.54 -0.45 16 22 N -0.28 -2.97 3.74 -56.71 -0.21 -3.18 16 23 N -0.26 -3.50 11.72 33.46 0.39 -3.11 16 24 C 0.12 0.76 7.17 -3.70 -0.03 0.74 16 25 C -0.14 -0.50 5.91 -26.58 -0.16 -0.66 16 26 C -0.13 -0.49 5.98 -26.41 -0.16 -0.65 16 27 C -0.05 -0.28 6.28 -27.59 -0.17 -0.46 16 28 C -0.17 -3.58 9.65 -39.39 -0.38 -3.96 16 29 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 31 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 34 H 0.07 1.13 8.08 -51.92 -0.42 0.71 16 35 H 0.41 6.19 8.19 -40.82 -0.33 5.86 16 36 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.31 8.11 -51.93 -0.42 -0.11 16 40 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.07 0.32 8.12 -51.93 -0.42 -0.11 16 43 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -34.30 381.90 -8.87 -43.16 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.95 Total: 8.05 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -4.33 Total: -15.26 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.59 Total: -42.15 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.09 Total: -14.99 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.30 -8.87 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771722616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.340 kcal (2) G-P(sol) polarization free energy of solvation -34.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds