Wall clock time and date at job start Sat Apr 11 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86795 * 119.99766 * 2 1 4 4 H 1.48506 * 109.47231 * 269.99907 * 3 2 1 5 5 H 1.48496 * 109.47350 * 29.99826 * 3 2 1 6 6 H 1.48503 * 109.47160 * 149.99958 * 3 2 1 7 7 C 1.38652 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00315 * 179.97438 * 7 2 1 9 9 O 1.34840 * 119.99729 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99746 * 185.06047 * 9 7 2 11 11 C 1.38901 * 120.06776 * 354.48601 * 10 9 7 12 12 C 1.38082 * 119.93078 * 179.97438 * 11 10 9 13 13 C 1.38325 * 120.06584 * 359.74947 * 12 11 10 14 14 C 1.38284 * 120.13935 * 0.50988 * 13 12 11 15 15 C 1.50695 * 119.96776 * 179.76626 * 14 13 12 16 16 N 1.46494 * 109.47202 * 269.72370 * 15 14 13 17 17 C 1.34781 * 120.00112 * 179.97438 * 16 15 14 18 18 O 1.21566 * 119.99981 * 359.97438 * 17 16 15 19 19 C 1.47715 * 119.99971 * 180.02562 * 17 16 15 20 20 C 1.41639 * 126.49806 * 180.02562 * 19 17 16 21 21 C 1.34699 * 105.33965 * 179.72029 * 20 19 17 22 22 N 1.35513 * 107.70785 * 0.28320 * 21 20 19 23 23 N 1.28420 * 109.71885 * 359.93702 * 22 21 20 24 24 C 1.46992 * 123.89837 * 179.97438 * 22 21 20 25 25 C 1.53151 * 108.88715 * 342.33329 * 24 22 21 26 26 C 1.53148 * 109.60257 * 51.12446 * 25 24 22 27 27 C 1.50798 * 127.53882 * 180.29962 * 21 20 19 28 28 C 1.38120 * 120.06814 * 359.48811 * 14 13 12 29 29 H 0.96994 * 119.99901 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.03967 * 0.02562 * 11 10 9 31 31 H 1.07995 * 119.96940 * 180.02562 * 12 11 10 32 32 H 1.07995 * 119.93447 * 180.27228 * 13 12 11 33 33 H 1.08996 * 109.47398 * 149.72154 * 15 14 13 34 34 H 1.09008 * 109.47068 * 29.72480 * 15 14 13 35 35 H 0.96997 * 120.00025 * 0.02562 * 16 15 14 36 36 H 1.08002 * 127.32970 * 359.97438 * 20 19 17 37 37 H 1.08999 * 109.56569 * 222.51581 * 24 22 21 38 38 H 1.08996 * 109.67246 * 102.21129 * 24 22 21 39 39 H 1.09002 * 109.44834 * 291.08452 * 25 24 22 40 40 H 1.08998 * 109.44892 * 171.16493 * 25 24 22 41 41 H 1.08998 * 109.54440 * 170.53861 * 26 25 24 42 42 H 1.08999 * 109.53739 * 50.27943 * 26 25 24 43 43 H 1.09003 * 109.71589 * 284.13548 * 27 21 20 44 44 H 1.08990 * 109.71584 * 44.78108 * 27 21 20 45 45 H 1.08000 * 120.03548 * 180.23354 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3347 -2.3685 0.0016 10 6 2.0701 -3.5045 0.1088 11 6 3.4575 -3.4393 0.0957 12 6 4.2027 -4.5966 0.2055 13 6 3.5689 -5.8194 0.3335 14 6 2.1878 -5.8882 0.3414 15 6 1.5014 -7.2230 0.4758 16 7 1.2720 -7.7903 -0.8552 17 6 0.6676 -8.9883 -0.9822 18 8 0.3133 -9.5983 0.0079 19 6 0.4368 -9.5606 -2.3243 20 6 -0.1821 -10.8007 -2.6163 21 6 -0.1759 -10.8943 -3.9600 22 7 0.4182 -9.7785 -4.4482 23 7 0.7704 -9.0151 -3.4775 24 6 0.6132 -9.5136 -5.8808 25 6 0.4635 -10.8277 -6.6529 26 6 -0.8446 -11.5145 -6.2496 27 6 -0.7206 -12.0181 -4.8052 28 6 1.4368 -4.7341 0.2320 29 1 -0.4850 0.8400 -0.0004 30 1 3.9530 -2.4844 0.0007 31 1 5.2815 -4.5465 0.1958 32 1 4.1539 -6.7227 0.4236 33 1 0.5462 -7.0908 0.9839 34 1 2.1308 -7.8985 1.0552 35 1 1.5557 -7.3041 -1.6452 36 1 -0.5787 -11.5167 -1.9117 37 1 1.6108 -9.1059 -6.0442 38 1 -0.1342 -8.7997 -6.2270 39 1 1.3036 -11.4825 -6.4213 40 1 0.4497 -10.6205 -7.7229 41 1 -1.0340 -12.3573 -6.9143 42 1 -1.6667 -10.8021 -6.3187 43 1 -0.0404 -12.8691 -4.7682 44 1 -1.7018 -12.3146 -4.4347 45 1 0.3582 -4.7881 0.2421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771722616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:57 Heat of formation + Delta-G solvation = 8.469014 kcal Electronic energy + Delta-G solvation = -27824.594935 eV Core-core repulsion = 23808.049834 eV Total energy + Delta-G solvation = -4016.545100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -43.82515 -41.01739 -40.38731 -38.47774 -37.49135 -35.84062 -34.29914 -34.06485 -32.51372 -31.29755 -30.70240 -29.64799 -27.75635 -27.07649 -25.32427 -24.18786 -23.28425 -23.00413 -22.40352 -21.50192 -20.22434 -19.54537 -18.88727 -17.99606 -17.77069 -17.25112 -16.97847 -16.79560 -16.57726 -16.10487 -15.93891 -15.54090 -15.44868 -15.21128 -15.02625 -14.88606 -14.78048 -14.55792 -14.34789 -13.96732 -13.72590 -13.69338 -13.38115 -13.04436 -12.86526 -12.56158 -12.41314 -12.29867 -12.22482 -12.12242 -11.96631 -11.87715 -11.63394 -11.42157 -11.21884 -10.82056 -10.33756 -9.99536 -9.93981 -9.79095 -9.05593 -8.47877 -6.16745 0.35203 0.47050 0.68368 1.10769 1.34825 1.43743 1.47378 1.52648 2.16571 2.19277 2.31613 2.83790 3.13716 3.24953 3.37161 3.56676 3.70625 3.77981 3.81264 3.88999 4.06749 4.26562 4.28639 4.30651 4.38745 4.40564 4.50200 4.50462 4.63129 4.69183 4.71133 4.74265 4.86388 4.99085 5.01356 5.03770 5.10323 5.13694 5.22590 5.24805 5.30717 5.34310 5.59853 5.68115 5.69243 5.85074 6.00380 6.14027 6.36979 6.87196 6.96560 7.08537 7.76745 8.75366 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014388 B = 0.002091 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.538486 B =13387.060247 C =14335.507973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.232 6.232 10 C 0.113 3.887 11 C -0.232 4.232 12 C -0.069 4.069 13 C -0.169 4.169 14 C -0.060 4.060 15 C 0.172 3.828 16 N -0.703 5.703 17 C 0.603 3.397 18 O -0.569 6.569 19 C -0.044 4.044 20 C -0.200 4.200 21 C 0.023 3.977 22 N -0.277 5.277 23 N -0.278 5.278 24 C 0.105 3.895 25 C -0.129 4.129 26 C -0.126 4.126 27 C -0.052 4.052 28 C -0.182 4.182 29 H 0.272 0.728 30 H 0.123 0.877 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.411 0.589 36 H 0.166 0.834 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.776 -24.520 -15.431 29.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.175 1.175 7 C -0.489 4.489 8 H 0.122 0.878 9 O -0.139 6.139 10 C 0.062 3.938 11 C -0.252 4.252 12 C -0.087 4.087 13 C -0.187 4.187 14 C -0.061 4.061 15 C 0.050 3.950 16 N -0.354 5.354 17 C 0.389 3.611 18 O -0.447 6.447 19 C -0.203 4.203 20 C -0.228 4.228 21 C -0.101 4.101 22 N -0.067 5.067 23 N -0.115 5.115 24 C -0.013 4.013 25 C -0.167 4.167 26 C -0.163 4.163 27 C -0.090 4.090 28 C -0.202 4.202 29 H 0.081 0.919 30 H 0.141 0.859 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.247 0.753 36 H 0.183 0.817 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.098 0.902 40 H 0.140 0.860 41 H 0.125 0.875 42 H 0.085 0.915 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.658 -23.770 -15.319 28.514 hybrid contribution -0.283 0.946 0.414 1.070 sum 3.374 -22.824 -14.905 27.468 Atomic orbital electron populations 1.70196 1.08105 1.28804 1.48893 1.26625 0.96849 1.02848 0.95873 0.84570 0.77825 0.74446 0.79271 1.18739 1.19764 1.17485 1.21848 0.92595 0.81319 1.53142 0.87827 1.83956 1.35947 1.12578 1.81399 1.19834 0.91706 0.87774 0.94452 1.21381 0.92890 1.00462 1.10420 1.21170 1.00498 0.91028 0.95960 1.21006 0.92961 0.98422 1.06355 1.19425 0.94094 0.92420 1.00131 1.20152 1.00159 0.90602 0.84107 1.45907 1.59757 1.19697 1.10025 1.17132 0.76891 0.80579 0.86494 1.90744 1.53347 1.61800 1.38816 1.21824 1.09121 0.97816 0.91517 1.21512 1.07606 0.98376 0.95261 1.21881 1.01804 0.92817 0.93614 1.46206 1.39949 1.12979 1.07567 1.73374 1.20803 1.21755 0.95519 1.22633 1.05333 1.01546 0.71807 1.21980 0.99372 0.93660 1.01651 1.21738 0.97257 1.02093 0.95227 1.20582 1.02465 0.92729 0.93258 1.20219 0.99376 0.90305 1.10330 0.91868 0.85916 0.83125 0.83453 0.91355 0.88838 0.75290 0.81682 0.87516 0.88017 0.90235 0.85976 0.87499 0.91468 0.87818 0.87981 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.15 13.67 21.61 0.30 -56.86 16 2 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 3 Si 1.02 42.87 29.55 68.60 2.03 44.90 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 6 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.41 -24.05 9.49 67.92 0.64 -23.40 16 8 H 0.10 5.48 5.20 -2.91 -0.02 5.46 16 9 O -0.23 -14.07 9.76 -22.86 -0.22 -14.29 16 10 C 0.11 5.62 6.65 22.58 0.15 5.77 16 11 C -0.23 -9.90 9.17 22.39 0.21 -9.69 16 12 C -0.07 -2.27 10.04 22.25 0.22 -2.05 16 13 C -0.17 -5.19 9.70 22.30 0.22 -4.98 16 14 C -0.06 -2.08 5.25 -19.88 -0.10 -2.19 16 15 C 0.17 5.34 5.80 85.63 0.50 5.84 16 16 N -0.70 -21.76 5.55 -469.84 -2.61 -24.36 16 17 C 0.60 19.97 7.83 86.75 0.68 20.65 16 18 O -0.57 -21.57 16.93 -3.93 -0.07 -21.63 16 19 C -0.04 -1.31 7.13 42.48 0.30 -1.00 16 20 C -0.20 -4.89 10.75 22.30 0.24 -4.65 16 21 C 0.02 0.43 6.57 41.21 0.27 0.70 16 22 N -0.28 -5.55 3.74 -333.34 -1.25 -6.80 16 23 N -0.28 -7.57 11.72 -48.06 -0.56 -8.14 16 24 C 0.10 1.13 7.17 86.34 0.62 1.75 16 25 C -0.13 -0.52 5.91 30.69 0.18 -0.34 16 26 C -0.13 -0.54 5.98 30.80 0.18 -0.35 16 27 C -0.05 -0.44 6.28 30.04 0.19 -0.25 16 28 C -0.18 -7.96 9.65 22.39 0.22 -7.75 16 29 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 31 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 32 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 33 H 0.07 2.24 8.08 -2.39 -0.02 2.23 16 34 H 0.09 2.60 8.08 -2.38 -0.02 2.58 16 35 H 0.41 12.41 8.19 -92.71 -0.76 11.65 16 36 H 0.17 3.70 8.06 -2.91 -0.02 3.68 16 37 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 0.35 8.11 -2.39 -0.02 0.33 16 40 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.07 0.39 8.12 -2.39 -0.02 0.37 16 43 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -80.98 381.90 3.07 -77.91 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.27 Total: 32.14 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: 5.18 Total: -22.88 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -4.12 Total: -96.15 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -0.29 Total: -35.92 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -80.98 3.07 -77.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771722616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.381 kcal (2) G-P(sol) polarization free energy of solvation -80.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds