Wall clock time and date at job start Sat Apr 11 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32158 * 119.99551 * 2 1 4 4 C 1.32127 * 119.99438 * 180.27389 * 3 2 1 5 5 C 1.38392 * 119.99947 * 359.73492 * 4 3 2 6 6 N 1.32121 * 119.99523 * 359.97438 * 5 4 3 7 7 C 1.32152 * 120.00360 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99983 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47144 * 89.99460 * 8 7 6 10 10 N 1.46500 * 109.47128 * 179.97438 * 9 8 7 11 11 C 1.34774 * 120.00119 * 180.02562 * 10 9 8 12 12 O 1.21282 * 120.00304 * 0.02562 * 11 10 9 13 13 C 1.50704 * 120.00135 * 180.02562 * 11 10 9 14 14 C 1.50699 * 109.47208 * 180.02562 * 13 11 10 15 15 C 1.38328 * 119.96230 * 269.97915 * 14 13 11 16 16 C 1.38281 * 120.13505 * 180.02562 * 15 14 13 17 17 C 1.38120 * 120.06679 * 359.68445 * 16 15 14 18 18 C 1.38852 * 119.93490 * 0.58817 * 17 16 15 19 19 O 1.35752 * 120.07221 * 179.70368 * 18 17 16 20 20 C 1.34829 * 116.99954 * 354.17311 * 19 18 17 21 21 H 1.07998 * 119.99999 * 5.03596 * 20 19 18 22 22 C 1.38656 * 119.99670 * 185.03445 * 20 19 18 23 23 N 1.31550 * 120.00275 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99668 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47010 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46908 * 119.99967 * 24 22 20 27 27 H 1.48504 * 109.47373 * 240.00300 * 24 22 20 28 28 C 1.38073 * 119.96534 * 89.99715 * 14 13 11 29 29 H 1.08998 * 109.47377 * 270.24393 * 1 2 3 30 30 H 1.09001 * 109.47506 * 30.24611 * 1 2 3 31 31 H 1.09000 * 109.47206 * 150.24592 * 1 2 3 32 32 H 1.07999 * 119.99577 * 179.75566 * 4 3 2 33 33 H 1.08000 * 119.99898 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.46571 * 329.99696 * 8 7 6 35 35 H 1.08998 * 109.47190 * 210.00143 * 8 7 6 36 36 H 1.09008 * 109.46644 * 60.00215 * 9 8 7 37 37 H 1.08998 * 109.47635 * 300.00411 * 9 8 7 38 38 H 0.97001 * 119.99420 * 0.02562 * 10 9 8 39 39 H 1.09002 * 109.46571 * 59.99894 * 13 11 10 40 40 H 1.08992 * 109.46782 * 300.00158 * 13 11 10 41 41 H 1.08001 * 119.93314 * 0.02562 * 15 14 13 42 42 H 1.07993 * 119.96315 * 179.97438 * 16 15 14 43 43 H 1.08006 * 120.03715 * 180.31908 * 17 16 15 44 44 H 0.96999 * 119.99936 * 179.97438 * 23 22 20 45 45 H 1.07996 * 120.03547 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1446 0.0000 4 6 3.4889 1.1446 -0.0055 5 6 4.1809 -0.0540 -0.0057 6 7 3.5202 -1.1981 0.0002 7 6 2.1987 -1.1980 0.0056 8 6 1.4451 -2.5031 0.0117 9 6 1.1962 -2.9416 1.4562 10 7 0.4631 -4.2100 1.4620 11 6 0.1305 -4.7907 2.6319 12 8 0.4377 -4.2631 3.6798 13 6 -0.6231 -6.0958 2.6379 14 6 -0.8695 -6.5270 4.0607 15 6 0.0552 -7.3244 4.7109 16 6 -0.1675 -7.7226 6.0163 17 6 -1.3115 -7.3196 6.6770 18 6 -2.2443 -6.5240 6.0252 19 8 -3.3726 -6.1313 6.6701 20 6 -3.5861 -6.6454 7.8980 21 1 -2.8369 -7.2720 8.3590 22 6 -4.7678 -6.3697 8.5691 23 7 -5.6806 -5.6069 8.0075 24 14 -5.0640 -7.0825 10.2701 25 1 -3.8927 -7.9009 10.6747 26 1 -5.2551 -5.9774 11.2435 27 1 -6.2793 -7.9355 10.2447 28 6 -2.0181 -6.1262 4.7137 29 1 -0.3634 0.0044 1.0276 30 1 -0.3634 0.8878 -0.5176 31 1 -0.3633 -0.8922 -0.5100 32 1 4.0289 2.0799 -0.0095 33 1 5.2609 -0.0540 -0.0097 34 1 2.0321 -3.2639 -0.5030 35 1 0.4906 -2.3739 -0.4985 36 1 0.6092 -2.1808 1.9708 37 1 2.1507 -3.0708 1.9663 38 1 0.2171 -4.6318 0.6239 39 1 -0.0359 -6.8567 2.1237 40 1 -1.5773 -5.9666 2.1274 41 1 0.9529 -7.6365 4.1980 42 1 0.5560 -8.3454 6.5211 43 1 -1.4826 -7.6267 7.6983 44 1 -6.5073 -5.4143 8.4768 45 1 -2.7399 -5.5043 4.2053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294213781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:09 Heat of formation + Delta-G solvation = 3.056567 kcal Electronic energy + Delta-G solvation = -27428.497867 eV Core-core repulsion = 23411.718065 eV Total energy + Delta-G solvation = -4016.779802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.64361 -39.79853 -38.74448 -36.59023 -35.93848 -34.91567 -33.78108 -32.36352 -31.97511 -30.21196 -29.12416 -28.42550 -27.09684 -25.29117 -24.75000 -23.36011 -22.31600 -21.62958 -21.18916 -20.17157 -18.31333 -17.65101 -17.14689 -16.96741 -16.69113 -16.28151 -15.72545 -15.60721 -15.26050 -15.02440 -14.67613 -14.33953 -14.02460 -13.89228 -13.68774 -13.38651 -13.34421 -13.29339 -13.04788 -12.79954 -12.51579 -12.38661 -12.33930 -11.99955 -11.83934 -11.60135 -11.42161 -11.34366 -11.23413 -10.79787 -10.71995 -10.56156 -10.39020 -9.78294 -9.48322 -9.44927 -9.27703 -9.16169 -8.78836 -8.00524 -7.15613 -6.39105 -3.97837 0.31443 0.71142 2.14601 2.45323 2.79084 3.03999 3.16454 3.17288 3.22965 3.27232 3.63182 3.72799 4.01001 4.01395 4.26150 4.53292 4.56737 4.62736 4.72572 4.86134 4.91252 4.94266 5.09369 5.15080 5.16595 5.24621 5.25991 5.30567 5.51756 5.53536 5.62122 5.70236 5.73472 5.81140 5.97967 5.99440 6.23792 6.30953 6.39912 6.71948 6.87291 6.97942 7.13537 7.32639 7.36957 7.42156 7.44698 7.50278 7.89214 8.06377 8.32510 9.06944 9.78381 10.79358 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016782 B = 0.001850 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.028205 B =15127.659873 C =15991.631571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.089 3.911 3 N -0.439 5.439 4 C 0.051 3.949 5 C 0.044 3.956 6 N -0.430 5.430 7 C 0.084 3.916 8 C -0.082 4.082 9 C 0.129 3.871 10 N -0.739 5.739 11 C 0.514 3.486 12 O -0.517 6.517 13 C -0.093 4.093 14 C -0.034 4.034 15 C -0.196 4.196 16 C -0.075 4.075 17 C -0.230 4.230 18 C 0.154 3.846 19 O -0.180 6.180 20 C -0.389 4.389 21 H 0.092 0.908 22 C 0.037 3.963 23 N -0.865 5.865 24 Si 0.940 3.060 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.174 4.174 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.400 0.600 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.268 0.732 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.481 7.226 -20.550 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.052 4.052 3 N -0.154 5.154 4 C -0.109 4.109 5 C -0.115 4.115 6 N -0.145 5.145 7 C -0.057 4.057 8 C -0.120 4.120 9 C 0.004 3.996 10 N -0.394 5.394 11 C 0.300 3.700 12 O -0.390 6.390 13 C -0.133 4.133 14 C -0.034 4.034 15 C -0.215 4.215 16 C -0.094 4.094 17 C -0.250 4.250 18 C 0.101 3.899 19 O -0.084 6.084 20 C -0.466 4.466 21 H 0.109 0.891 22 C -0.166 4.166 23 N -0.500 5.500 24 Si 0.765 3.235 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.194 4.194 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.188 0.812 33 H 0.188 0.812 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.234 0.766 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.078 0.922 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 15.295 7.870 -19.748 26.189 hybrid contribution 0.072 -0.368 0.503 0.627 sum 15.367 7.502 -19.245 25.745 Atomic orbital electron populations 1.20850 0.87509 1.04135 1.04182 1.22167 0.98599 0.88917 0.95476 1.68334 1.09025 1.29097 1.08935 1.23806 0.90780 1.00001 0.96289 1.23772 1.01990 0.88661 0.97125 1.68259 1.08103 1.30062 1.08062 1.21772 0.90639 0.95908 0.97403 1.20751 1.00239 0.93081 0.97951 1.21125 0.97393 0.86160 0.94885 1.45970 1.60016 1.24388 1.09008 1.20791 0.79328 0.86662 0.83200 1.90774 1.52656 1.64237 1.31370 1.20586 1.01308 0.94452 0.96920 1.18660 0.94293 0.97346 0.93150 1.20356 0.99814 1.05298 0.96050 1.20679 0.96206 0.98227 0.94247 1.21176 0.96553 1.05713 1.01530 1.19282 0.87523 0.91813 0.91296 1.83975 1.34417 1.60041 1.29977 1.21365 1.03657 1.30996 0.90574 0.89084 1.25274 0.94588 0.96855 0.99899 1.70048 1.07468 1.34653 1.37839 0.85655 0.78758 0.78651 0.80399 1.19131 1.20210 1.20194 1.19945 0.99355 1.06638 0.93415 0.89343 0.89954 0.89738 0.81231 0.81204 0.88820 0.88614 0.91332 0.91181 0.76641 0.88329 0.88163 0.87938 0.87496 0.85633 0.92182 0.86819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 9.78 36.00 0.35 -0.36 16 2 C 0.09 0.79 6.78 -82.42 -0.56 0.23 16 3 N -0.44 -4.20 10.42 -9.29 -0.10 -4.30 16 4 C 0.05 0.37 11.23 -17.37 -0.19 0.18 16 5 C 0.04 0.32 11.23 -17.37 -0.20 0.13 16 6 N -0.43 -4.10 10.42 -9.29 -0.10 -4.20 16 7 C 0.08 0.74 6.04 -82.42 -0.50 0.24 16 8 C -0.08 -0.54 5.24 -27.88 -0.15 -0.69 16 9 C 0.13 1.24 5.66 -4.04 -0.02 1.22 16 10 N -0.74 -7.00 5.56 -60.29 -0.33 -7.34 16 11 C 0.51 7.27 7.82 -10.98 -0.09 7.18 16 12 O -0.52 -10.16 16.03 5.56 0.09 -10.07 16 13 C -0.09 -1.20 5.83 -29.03 -0.17 -1.37 16 14 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 15 C -0.20 -3.60 9.70 -39.53 -0.38 -3.98 16 16 C -0.08 -1.47 10.04 -39.61 -0.40 -1.87 16 17 C -0.23 -5.28 9.17 -39.40 -0.36 -5.65 16 18 C 0.15 3.90 6.65 -39.11 -0.26 3.64 16 19 O -0.18 -5.32 9.76 0.05 0.00 -5.32 16 20 C -0.39 -11.20 9.49 30.89 0.29 -10.91 16 21 H 0.09 2.44 5.21 -52.49 -0.27 2.16 16 22 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 23 N -0.86 -25.86 13.67 55.48 0.76 -25.10 16 24 Si 0.94 21.02 29.55 -169.99 -5.02 15.99 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 28 C -0.17 -3.85 9.65 -39.39 -0.38 -4.23 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.38 5.95 -51.93 -0.31 0.07 16 32 H 0.17 0.66 8.06 -52.49 -0.42 0.23 16 33 H 0.17 0.68 8.06 -52.49 -0.42 0.25 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.42 5.94 -51.93 -0.31 0.11 16 36 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.40 2.27 8.47 -40.82 -0.35 1.92 16 39 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 40 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 41 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 42 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.13 2.87 5.64 -52.48 -0.30 2.57 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.11 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 387.58 15.07 5.84 5.84 Total: -1.00 -38.12 387.58 -8.16 -46.28 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.74 Total: 4.56 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -3.56 Total: -16.36 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.23 Total: -40.93 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.09 Total: -15.39 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.12 -8.16 -46.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294213781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.339 kcal (2) G-P(sol) polarization free energy of solvation -38.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds